Strain Fitness in Rahnella sp. WP5 around EX31_RS14015

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14010 and EX31_RS14015 overlap by 1 nucleotidesEX31_RS14015 and EX31_RS14020 overlap by 1 nucleotides EX31_RS14010: EX31_RS14010 - bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA, at 65,303 to 67,285 _RS14010 EX31_RS14015: EX31_RS14015 - undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase, at 67,285 to 68,265 _RS14015 EX31_RS14020: EX31_RS14020 - UDP-4-amino-4-deoxy-L-arabinose aminotransferase, at 68,265 to 69,407 _RS14020 Position (kb) 67 68 69Strain fitness (log2 ratio) -1 0 1 2at 66.330 kb on - strand, within EX31_RS14010at 66.330 kb on - strand, within EX31_RS14010at 66.330 kb on - strand, within EX31_RS14010at 66.392 kb on - strand, within EX31_RS14010at 66.392 kb on - strand, within EX31_RS14010at 66.392 kb on - strand, within EX31_RS14010at 66.426 kb on - strand, within EX31_RS14010at 66.426 kb on - strand, within EX31_RS14010at 66.426 kb on - strand, within EX31_RS14010at 66.426 kb on - strand, within EX31_RS14010at 66.430 kb on - strand, within EX31_RS14010at 66.430 kb on - strand, within EX31_RS14010at 66.430 kb on - strand, within EX31_RS14010at 66.430 kb on - strand, within EX31_RS14010at 66.430 kb on - strand, within EX31_RS14010at 66.430 kb on - strand, within EX31_RS14010at 66.571 kb on + strand, within EX31_RS14010at 66.572 kb on - strand, within EX31_RS14010at 66.572 kb on - strand, within EX31_RS14010at 66.572 kb on - strand, within EX31_RS14010at 66.572 kb on - strand, within EX31_RS14010at 66.572 kb on - strand, within EX31_RS14010at 66.635 kb on - strand, within EX31_RS14010at 66.696 kb on + strand, within EX31_RS14010at 66.771 kb on - strand, within EX31_RS14010at 66.887 kb on - strand, within EX31_RS14010at 67.008 kb on - strand, within EX31_RS14010at 67.028 kb on - strand, within EX31_RS14010at 67.031 kb on - strand, within EX31_RS14010at 67.031 kb on - strand, within EX31_RS14010at 67.031 kb on - strand, within EX31_RS14010at 67.031 kb on - strand, within EX31_RS14010at 67.036 kb on - strand, within EX31_RS14010at 67.065 kb on - strand, within EX31_RS14010at 67.065 kb on - strand, within EX31_RS14010at 67.100 kb on - strandat 67.117 kb on - strandat 67.256 kb on - strandat 67.287 kb on - strandat 67.344 kb on - strandat 67.371 kb on - strandat 67.371 kb on - strandat 67.385 kb on + strand, within EX31_RS14015at 67.385 kb on + strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.386 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.432 kb on - strand, within EX31_RS14015at 67.436 kb on - strand, within EX31_RS14015at 67.436 kb on - strand, within EX31_RS14015at 67.601 kb on + strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.602 kb on - strand, within EX31_RS14015at 67.632 kb on - strand, within EX31_RS14015at 67.632 kb on - strand, within EX31_RS14015at 67.679 kb on - strand, within EX31_RS14015at 67.679 kb on - strand, within EX31_RS14015at 67.679 kb on - strand, within EX31_RS14015at 67.710 kb on + strand, within EX31_RS14015at 67.711 kb on - strand, within EX31_RS14015at 67.717 kb on - strand, within EX31_RS14015at 67.717 kb on - strand, within EX31_RS14015at 67.723 kb on - strand, within EX31_RS14015at 67.723 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.747 kb on - strand, within EX31_RS14015at 67.782 kb on + strand, within EX31_RS14015at 67.782 kb on + strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.783 kb on - strand, within EX31_RS14015at 67.791 kb on - strand, within EX31_RS14015at 67.830 kb on + strand, within EX31_RS14015at 67.830 kb on + strand, within EX31_RS14015at 67.831 kb on - strand, within EX31_RS14015at 67.831 kb on - strand, within EX31_RS14015at 67.831 kb on - strand, within EX31_RS14015at 67.855 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.886 kb on - strand, within EX31_RS14015at 67.974 kb on + strand, within EX31_RS14015at 67.975 kb on - strand, within EX31_RS14015at 67.975 kb on - strand, within EX31_RS14015at 67.975 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 67.994 kb on - strand, within EX31_RS14015at 68.002 kb on - strand, within EX31_RS14015at 68.034 kb on - strand, within EX31_RS14015at 68.058 kb on + strand, within EX31_RS14015at 68.058 kb on + strand, within EX31_RS14015at 68.059 kb on - strand, within EX31_RS14015at 68.059 kb on - strand, within EX31_RS14015at 68.144 kb on + strand, within EX31_RS14015at 68.145 kb on - strand, within EX31_RS14015at 68.156 kb on - strand, within EX31_RS14015at 68.216 kb on + strandat 68.217 kb on - strandat 68.242 kb on - strandat 68.256 kb on - strandat 68.256 kb on - strandat 68.328 kb on - strandat 68.353 kb on - strandat 68.353 kb on - strandat 68.443 kb on - strand, within EX31_RS14020at 68.532 kb on + strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.533 kb on - strand, within EX31_RS14020at 68.566 kb on - strand, within EX31_RS14020at 68.596 kb on - strand, within EX31_RS14020at 68.608 kb on + strand, within EX31_RS14020at 68.658 kb on - strand, within EX31_RS14020at 68.701 kb on + strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.702 kb on - strand, within EX31_RS14020at 68.705 kb on + strand, within EX31_RS14020at 68.706 kb on - strand, within EX31_RS14020at 68.800 kb on - strand, within EX31_RS14020at 68.859 kb on - strand, within EX31_RS14020at 68.920 kb on + strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.976 kb on - strand, within EX31_RS14020at 68.986 kb on + strand, within EX31_RS14020at 68.986 kb on + strand, within EX31_RS14020at 68.987 kb on - strand, within EX31_RS14020at 68.987 kb on - strand, within EX31_RS14020at 69.263 kb on + strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020at 69.264 kb on - strand, within EX31_RS14020

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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66,330 - EX31_RS14010 0.52 +0.6
66,330 - EX31_RS14010 0.52 +0.3
66,330 - EX31_RS14010 0.52 +0.5
66,392 - EX31_RS14010 0.55 -0.7
66,392 - EX31_RS14010 0.55 +0.2
66,392 - EX31_RS14010 0.55 +0.5
66,426 - EX31_RS14010 0.57 +0.7
66,426 - EX31_RS14010 0.57 +0.3
66,426 - EX31_RS14010 0.57 +0.8
66,426 - EX31_RS14010 0.57 +1.8
66,430 - EX31_RS14010 0.57 +1.4
66,430 - EX31_RS14010 0.57 +0.6
66,430 - EX31_RS14010 0.57 +0.8
66,430 - EX31_RS14010 0.57 +0.9
66,430 - EX31_RS14010 0.57 +0.2
66,430 - EX31_RS14010 0.57 -1.1
66,571 + EX31_RS14010 0.64 -0.1
66,572 - EX31_RS14010 0.64 +0.1
66,572 - EX31_RS14010 0.64 +0.4
66,572 - EX31_RS14010 0.64 +0.6
66,572 - EX31_RS14010 0.64 -0.0
66,572 - EX31_RS14010 0.64 +0.0
66,635 - EX31_RS14010 0.67 +0.6
66,696 + EX31_RS14010 0.70 -0.5
66,771 - EX31_RS14010 0.74 +1.5
66,887 - EX31_RS14010 0.80 +0.2
67,008 - EX31_RS14010 0.86 +0.3
67,028 - EX31_RS14010 0.87 +0.5
67,031 - EX31_RS14010 0.87 +0.1
67,031 - EX31_RS14010 0.87 -1.0
67,031 - EX31_RS14010 0.87 +0.0
67,031 - EX31_RS14010 0.87 +0.4
67,036 - EX31_RS14010 0.87 +1.6
67,065 - EX31_RS14010 0.89 +1.1
67,065 - EX31_RS14010 0.89 +0.3
67,100 - +0.6
67,117 - -0.2
67,256 - -1.1
67,287 - -1.4
67,344 - -0.1
67,371 - +1.1
67,371 - +1.1
67,385 + EX31_RS14015 0.10 -0.7
67,385 + EX31_RS14015 0.10 +1.3
67,386 - EX31_RS14015 0.10 +0.8
67,386 - EX31_RS14015 0.10 +0.5
67,386 - EX31_RS14015 0.10 +0.1
67,386 - EX31_RS14015 0.10 -0.4
67,386 - EX31_RS14015 0.10 -0.7
67,386 - EX31_RS14015 0.10 +0.2
67,386 - EX31_RS14015 0.10 +0.9
67,432 - EX31_RS14015 0.15 +0.8
67,432 - EX31_RS14015 0.15 +0.1
67,432 - EX31_RS14015 0.15 +0.6
67,432 - EX31_RS14015 0.15 -0.0
67,432 - EX31_RS14015 0.15 +0.6
67,432 - EX31_RS14015 0.15 +0.1
67,432 - EX31_RS14015 0.15 +0.3
67,432 - EX31_RS14015 0.15 +0.6
67,432 - EX31_RS14015 0.15 -0.3
67,432 - EX31_RS14015 0.15 +1.4
67,436 - EX31_RS14015 0.15 -1.5
67,436 - EX31_RS14015 0.15 +0.1
67,601 + EX31_RS14015 0.32 -0.5
67,602 - EX31_RS14015 0.32 -0.6
67,602 - EX31_RS14015 0.32 +0.5
67,602 - EX31_RS14015 0.32 +0.6
67,602 - EX31_RS14015 0.32 +0.2
67,602 - EX31_RS14015 0.32 -0.2
67,602 - EX31_RS14015 0.32 +0.5
67,602 - EX31_RS14015 0.32 +0.1
67,602 - EX31_RS14015 0.32 +0.1
67,602 - EX31_RS14015 0.32 +0.3
67,602 - EX31_RS14015 0.32 +1.4
67,602 - EX31_RS14015 0.32 +0.7
67,632 - EX31_RS14015 0.35 -0.7
67,632 - EX31_RS14015 0.35 +0.3
67,679 - EX31_RS14015 0.40 -0.1
67,679 - EX31_RS14015 0.40 +0.8
67,679 - EX31_RS14015 0.40 +0.5
67,710 + EX31_RS14015 0.43 +0.9
67,711 - EX31_RS14015 0.43 +0.4
67,717 - EX31_RS14015 0.44 +0.2
67,717 - EX31_RS14015 0.44 -0.7
67,723 - EX31_RS14015 0.45 -0.0
67,723 - EX31_RS14015 0.45 -0.2
67,747 - EX31_RS14015 0.47 -0.7
67,747 - EX31_RS14015 0.47 -0.4
67,747 - EX31_RS14015 0.47 +0.7
67,747 - EX31_RS14015 0.47 +0.1
67,782 + EX31_RS14015 0.51 +0.5
67,782 + EX31_RS14015 0.51 -0.9
67,783 - EX31_RS14015 0.51 +2.7
67,783 - EX31_RS14015 0.51 +0.6
67,783 - EX31_RS14015 0.51 +0.3
67,783 - EX31_RS14015 0.51 +0.4
67,791 - EX31_RS14015 0.52 +0.9
67,830 + EX31_RS14015 0.56 +0.0
67,830 + EX31_RS14015 0.56 +0.0
67,831 - EX31_RS14015 0.56 +0.9
67,831 - EX31_RS14015 0.56 +0.4
67,831 - EX31_RS14015 0.56 +0.4
67,855 - EX31_RS14015 0.58 +0.2
67,886 - EX31_RS14015 0.61 -0.2
67,886 - EX31_RS14015 0.61 -0.0
67,886 - EX31_RS14015 0.61 -0.0
67,886 - EX31_RS14015 0.61 -0.0
67,886 - EX31_RS14015 0.61 -0.2
67,974 + EX31_RS14015 0.70 -0.5
67,975 - EX31_RS14015 0.70 +0.1
67,975 - EX31_RS14015 0.70 -1.0
67,975 - EX31_RS14015 0.70 +0.4
67,994 - EX31_RS14015 0.72 +0.2
67,994 - EX31_RS14015 0.72 -0.3
67,994 - EX31_RS14015 0.72 +0.2
67,994 - EX31_RS14015 0.72 -0.1
67,994 - EX31_RS14015 0.72 +0.0
67,994 - EX31_RS14015 0.72 +1.0
67,994 - EX31_RS14015 0.72 -0.5
68,002 - EX31_RS14015 0.73 -0.3
68,034 - EX31_RS14015 0.76 +0.3
68,058 + EX31_RS14015 0.79 +0.2
68,058 + EX31_RS14015 0.79 +1.3
68,059 - EX31_RS14015 0.79 -0.3
68,059 - EX31_RS14015 0.79 +0.1
68,144 + EX31_RS14015 0.88 -0.1
68,145 - EX31_RS14015 0.88 +0.8
68,156 - EX31_RS14015 0.89 +0.1
68,216 + -0.2
68,217 - +0.2
68,242 - -0.4
68,256 - -0.4
68,256 - -0.1
68,328 - +0.8
68,353 - -0.6
68,353 - +1.5
68,443 - EX31_RS14020 0.16 -0.5
68,532 + EX31_RS14020 0.23 +0.0
68,533 - EX31_RS14020 0.23 -0.0
68,533 - EX31_RS14020 0.23 +0.6
68,533 - EX31_RS14020 0.23 -1.7
68,533 - EX31_RS14020 0.23 -0.8
68,533 - EX31_RS14020 0.23 -1.6
68,533 - EX31_RS14020 0.23 +1.1
68,533 - EX31_RS14020 0.23 -0.3
68,533 - EX31_RS14020 0.23 -0.1
68,533 - EX31_RS14020 0.23 -0.0
68,533 - EX31_RS14020 0.23 +0.9
68,533 - EX31_RS14020 0.23 -0.1
68,533 - EX31_RS14020 0.23 +0.0
68,533 - EX31_RS14020 0.23 +0.9
68,533 - EX31_RS14020 0.23 +0.0
68,566 - EX31_RS14020 0.26 -0.3
68,596 - EX31_RS14020 0.29 +0.8
68,608 + EX31_RS14020 0.30 +0.7
68,658 - EX31_RS14020 0.34 +0.3
68,701 + EX31_RS14020 0.38 -0.7
68,702 - EX31_RS14020 0.38 +0.8
68,702 - EX31_RS14020 0.38 -0.9
68,702 - EX31_RS14020 0.38 +0.5
68,702 - EX31_RS14020 0.38 +0.2
68,705 + EX31_RS14020 0.38 -0.1
68,706 - EX31_RS14020 0.39 +0.3
68,800 - EX31_RS14020 0.47 +0.2
68,859 - EX31_RS14020 0.52 +0.4
68,920 + EX31_RS14020 0.57 -0.9
68,976 - EX31_RS14020 0.62 +0.4
68,976 - EX31_RS14020 0.62 +0.8
68,976 - EX31_RS14020 0.62 +2.1
68,986 + EX31_RS14020 0.63 -0.6
68,986 + EX31_RS14020 0.63 +1.9
68,987 - EX31_RS14020 0.63 -0.0
68,987 - EX31_RS14020 0.63 +1.1
69,263 + EX31_RS14020 0.87 +0.8
69,264 - EX31_RS14020 0.87 +0.2
69,264 - EX31_RS14020 0.87 +0.5
69,264 - EX31_RS14020 0.87 -0.8
69,264 - EX31_RS14020 0.87 -1.5
69,264 - EX31_RS14020 0.87 -0.2
69,264 - EX31_RS14020 0.87 +0.5
69,264 - EX31_RS14020 0.87 +0.3
69,264 - EX31_RS14020 0.87 +0.4
69,264 - EX31_RS14020 0.87 -0.7
69,264 - EX31_RS14020 0.87 +1.2
69,264 - EX31_RS14020 0.87 +0.4
69,264 - EX31_RS14020 0.87 -0.2

Or see this region's nucleotide sequence