Strain Fitness in Rahnella sp. WP5 around EX31_RS12335

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
137,606	+				-1.0
137,607	-				-0.4
137,607	-				-1.9
137,607	-				+1.8
137,607	-				-0.5
137,610	+				+0.5
137,610	+				-0.3
137,611	-				+0.3
137,611	-				-0.0
137,611	-				+1.1
137,611	-				-0.7
137,614	-				+0.6
137,637	+				-1.1
137,638	-				-0.0
137,638	-				-0.7
137,638	-				-0.6
137,638	-				+0.0
137,741	+				-0.4
137,742	-				+0.0
137,742	-				-0.3
137,742	-				+0.2
137,799	+		EX31_RS12330	0.22	-0.6
137,800	-		EX31_RS12330	0.23	-0.1
137,800	-		EX31_RS12330	0.23	-2.6
137,800	-		EX31_RS12330	0.23	+0.2
137,866	-		EX31_RS12330	0.39	-0.0
137,866	-		EX31_RS12330	0.39	-0.8
137,889	-		EX31_RS12330	0.44	+0.5
137,890	+		EX31_RS12330	0.45	-0.7
137,890	+		EX31_RS12330	0.45	-0.3
137,890	+		EX31_RS12330	0.45	-0.6
137,890	+		EX31_RS12330	0.45	+0.1
137,890	+		EX31_RS12330	0.45	-0.2
137,890	+		EX31_RS12330	0.45	-0.4
137,890	+		EX31_RS12330	0.45	+0.1
137,891	-		EX31_RS12330	0.45	+0.2
137,891	-		EX31_RS12330	0.45	-0.1
137,891	-		EX31_RS12330	0.45	+0.1
137,922	+		EX31_RS12330	0.52	-0.7
137,931	+		EX31_RS12330	0.55	-0.6
138,066	+		EX31_RS12330	0.87	-1.1
138,066	+		EX31_RS12330	0.87	-1.9
138,067	-		EX31_RS12330	0.88	+0.5
138,111	+				-0.4
138,111	+				-0.2
138,117	+				-0.2
138,118	-				+0.2
138,118	-				-1.1
138,183	+				-0.5
138,240	+				-0.5
138,240	+				-1.3
138,240	+				-0.5
138,240	+				-0.6
138,241	-				+0.3
138,250	+				-0.8
138,276	+				-1.4
138,280	+				-0.8
138,281	-				-0.6
138,281	-				+0.3
138,317	-				-0.0
138,324	+				-1.5
138,325	-				+0.6
138,337	-				-1.2
138,346	+				-1.1
138,347	-				+0.3
138,347	-				+0.6
138,347	-				-0.5
138,347	-				-0.7
138,348	+				-0.6
138,348	+				-0.4
138,348	+				+0.8
138,349	-				+0.1
138,357	-				-0.4
138,396	+				+0.4
138,396	+				+1.0
138,397	-				+1.4
138,397	-				-0.4
138,456	-				-0.3
138,470	+				-0.5
138,471	-				-1.1
138,582	-		EX31_RS12335	0.19	-1.2
138,593	+		EX31_RS12335	0.22	+0.5
138,593	+		EX31_RS12335	0.22	+2.4
138,593	+		EX31_RS12335	0.22	+3.1
138,594	-		EX31_RS12335	0.22	+0.3
138,630	+		EX31_RS12335	0.32	+2.9
138,630	+		EX31_RS12335	0.32	+3.0
138,631	-		EX31_RS12335	0.32	-1.8
138,631	-		EX31_RS12335	0.32	-1.6
138,634	+		EX31_RS12335	0.33	+2.8
138,634	+		EX31_RS12335	0.33	+3.2
138,634	+		EX31_RS12335	0.33	+2.8
138,634	+		EX31_RS12335	0.33	+3.3
138,634	+		EX31_RS12335	0.33	+2.9
138,634	+		EX31_RS12335	0.33	+3.9
138,634	+		EX31_RS12335	0.33	+2.2
138,634	+		EX31_RS12335	0.33	+2.4
138,634	+		EX31_RS12335	0.33	+3.4
138,636	+		EX31_RS12335	0.34	+3.3
138,687	-		EX31_RS12335	0.48	-0.9
138,689	+		EX31_RS12335	0.49	+2.8
138,689	+		EX31_RS12335	0.49	+2.0
138,699	+		EX31_RS12335	0.52	+2.7
138,817	+		EX31_RS12335	0.85	+2.2
138,818	-		EX31_RS12335	0.86	-1.2
138,818	-		EX31_RS12335	0.86	+0.1
138,852	+				+0.3
138,853	-				-1.0
138,853	-				-0.5
138,861	+				+1.7
138,861	+				-1.3
138,861	+				+0.7
138,861	+				-0.7
138,861	+				-0.1
138,866	-				-0.4
138,892	+				-1.1
138,893	-				-0.6
138,893	-				+0.4
138,893	-				-0.4
138,924	+				+2.5
138,924	+				+2.6
138,924	+				+2.2
138,924	+				+3.0
138,924	+				+2.8
138,924	+				+2.0
138,924	+				+2.4
138,924	+				+3.0
138,924	+				+1.6
138,924	+				+2.5
138,925	-				+0.8
138,925	-				-2.3
138,928	-				-1.1
138,928	-				+0.0
138,949	-				-1.2
139,027	+		EX31_RS12340	0.31	+2.7
139,027	+		EX31_RS12340	0.31	+2.8
139,027	+		EX31_RS12340	0.31	+3.0
139,027	+		EX31_RS12340	0.31	+3.1
139,028	-		EX31_RS12340	0.31	-0.7
139,072	+		EX31_RS12340	0.43	+2.6
139,072	+		EX31_RS12340	0.43	+2.7
139,124	+		EX31_RS12340	0.57	+3.5
139,125	-		EX31_RS12340	0.58	-0.6
139,130	+		EX31_RS12340	0.59	+3.1
139,131	-		EX31_RS12340	0.59	+0.0
139,132	+		EX31_RS12340	0.60	+3.0
139,132	+		EX31_RS12340	0.60	+3.2
139,133	-		EX31_RS12340	0.60	-1.1
139,133	-		EX31_RS12340	0.60	-1.6
139,133	-		EX31_RS12340	0.60	+0.8
139,138	+		EX31_RS12340	0.61	+2.7
139,138	+		EX31_RS12340	0.61	+3.3
139,180	+		EX31_RS12340	0.73	+3.0
139,181	-		EX31_RS12340	0.73	-0.9
139,194	+		EX31_RS12340	0.77	+3.2
139,194	+		EX31_RS12340	0.77	+3.3
139,195	-		EX31_RS12340	0.77	-1.2
139,200	+		EX31_RS12340	0.78	+3.2
139,213	+		EX31_RS12340	0.82	+3.3
139,253	+				+3.5
139,253	+				+3.0
139,253	+				+3.0
139,253	+				+2.6
139,255	+				-0.8
139,255	+				-0.1
139,255	+				-0.2
139,265	+				+0.2
139,266	-				-0.4
139,266	-				-0.5
139,266	-				-0.2
139,292	+				-0.4
139,403	+		EX31_RS12345	0.41	-0.2
139,403	+		EX31_RS12345	0.41	-0.6
139,403	+		EX31_RS12345	0.41	+0.4
139,412	+		EX31_RS12345	0.44	-0.7
139,412	+		EX31_RS12345	0.44	+0.1
139,413	-		EX31_RS12345	0.45	-1.2
139,433	+		EX31_RS12345	0.51	+0.4
139,433	+		EX31_RS12345	0.51	+0.8
139,436	+		EX31_RS12345	0.52	-0.3
139,504	+		EX31_RS12345	0.75	-0.6
139,590	-				-0.5
139,590	-				-0.4
139,592	-				+0.7
139,604	+				+1.3
139,605	-				-0.5
139,606	+				-1.1
139,606	+				-0.2
139,606	+				-0.4
139,607	-				-1.8
139,607	-				-0.6
139,607	-				-1.9
139,611	-				-0.7
139,627	+				-0.8
139,669	+				-0.1
139,669	+				-0.4
139,688	+				-1.1
139,688	+				-0.1
139,688	+				-0.3
139,688	+				+0.3
139,688	+				-0.2
139,688	+				+0.1
139,689	-		EX31_RS12350	0.10	-0.6
139,689	-		EX31_RS12350	0.10	+0.1
139,689	-		EX31_RS12350	0.10	+0.4
139,744	+		EX31_RS12350	0.17	+0.5
139,745	-		EX31_RS12350	0.17	-0.2