Strain Fitness in Rahnella sp. WP5 around EX31_RS10935

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
114,903	-				-1.1
114,918	+				+2.0
114,980	-				+0.2
114,980	-				-0.9
114,980	-				-0.7
114,985	-				-0.1
115,090	-		EX31_RS10930	0.51	+0.2
115,090	-		EX31_RS10930	0.51	-0.1
115,105	-		EX31_RS10930	0.59	+0.3
115,125	-		EX31_RS10930	0.69	-0.4
115,210	+				+1.9
115,216	+				-0.4
115,221	+				-1.3
115,221	+				+0.5
115,221	+				-0.2
115,222	-				-0.8
115,225	-				-0.8
115,225	-				+0.5
115,281	+				+1.1
115,348	+				-0.7
115,350	+				-0.0
115,351	-				-1.7
115,351	-				-0.4
115,380	+				+0.7
115,381	-				-0.1
115,384	+				+0.2
115,384	+				+0.8
115,384	+				+0.9
115,384	+				-0.7
115,384	+				+0.4
115,384	+				+0.4
115,384	+				+1.4
115,384	+				+1.3
115,384	+				-0.4
115,384	+				-1.2
115,384	+				-0.9
115,385	-				-0.9
115,385	-				-0.5
115,385	-				-0.5
115,385	-				-2.3
115,385	-				-0.6
115,396	+				+0.6
115,397	-				-2.4
115,397	-				+0.7
115,397	-				-2.2
115,435	-				+0.7
115,460	-				+1.0
115,581	-				+1.3
115,604	-				+1.8
115,615	-				+0.6
115,615	-				+0.9
115,615	-				+1.2
115,615	-				+0.8
115,615	-				+1.3
115,615	-				+0.7
115,615	-				+1.1
115,615	-				+2.0
115,649	-		EX31_RS10935	0.17	+2.4
115,649	-		EX31_RS10935	0.17	+1.8
115,649	-		EX31_RS10935	0.17	+1.5
115,674	-		EX31_RS10935	0.29	+1.2
115,674	-		EX31_RS10935	0.29	+1.3
115,674	-		EX31_RS10935	0.29	+1.2
115,674	-		EX31_RS10935	0.29	+1.5
115,674	-		EX31_RS10935	0.29	+0.9
115,731	-		EX31_RS10935	0.56	+0.7
115,731	-		EX31_RS10935	0.56	+1.0
115,731	-		EX31_RS10935	0.56	+1.8
115,731	-		EX31_RS10935	0.56	+1.5
115,731	-		EX31_RS10935	0.56	+1.3
115,731	-		EX31_RS10935	0.56	+0.9
115,781	-		EX31_RS10935	0.80	+1.4
115,781	-		EX31_RS10935	0.80	+0.5
115,799	-		EX31_RS10935	0.89	+1.4
115,799	-		EX31_RS10935	0.89	+1.2
115,799	-		EX31_RS10935	0.89	+1.7
115,823	-				+1.1
115,823	-				+1.5
115,823	-				+0.8
115,823	-				+0.6
115,823	-				+0.6
115,823	-				+0.7
115,823	-				+1.6
115,830	-				+0.4
115,867	-				+0.6
115,867	-				+0.9
115,867	-				+0.6
115,867	-				+1.0
115,867	-				+0.0
115,887	-				+1.1
115,887	-				+0.3
115,891	-				+0.1
115,891	-				+0.2
115,891	-				+0.4
115,891	-				+1.4
115,962	-				+0.5
115,980	-				+0.6
115,980	-				+1.1
115,980	-				+0.8
115,980	-				+1.4
115,984	-				+0.8
115,984	-				+1.4
115,984	-				+1.3
115,984	-				+1.2
115,992	-				+0.6
116,005	-				+1.4
116,005	-				+1.9
116,008	+				-2.2
116,008	+				+0.6
116,008	+				-0.5
116,009	-				-0.3
116,009	-				-1.1
116,009	-				+0.1
116,009	-				-0.7
116,009	-				-0.9
116,009	-				-0.2
116,009	-				+0.7
116,013	-				-0.3
116,109	-				-1.3
116,191	-				-2.0
116,261	+		EX31_RS10940	0.15	+0.8
116,261	+		EX31_RS10940	0.15	+1.0
116,261	+		EX31_RS10940	0.15	+0.1
116,261	+		EX31_RS10940	0.15	-0.1
116,262	-		EX31_RS10940	0.15	-0.3
116,262	-		EX31_RS10940	0.15	-1.5
116,262	-		EX31_RS10940	0.15	+1.9
116,262	-		EX31_RS10940	0.15	-0.7
116,262	-		EX31_RS10940	0.15	+0.1
116,263	+		EX31_RS10940	0.15	-0.1
116,263	+		EX31_RS10940	0.15	-0.3
116,263	+		EX31_RS10940	0.15	+1.0
116,263	+		EX31_RS10940	0.15	-0.3
116,263	+		EX31_RS10940	0.15	+0.5
116,263	+		EX31_RS10940	0.15	-1.4
116,263	+		EX31_RS10940	0.15	+0.4
116,263	+		EX31_RS10940	0.15	+0.1
116,263	+		EX31_RS10940	0.15	-0.1
116,263	+		EX31_RS10940	0.15	+0.2
116,263	+		EX31_RS10940	0.15	-0.3
116,263	+		EX31_RS10940	0.15	-0.7
116,264	-		EX31_RS10940	0.15	-0.4
116,264	-		EX31_RS10940	0.15	+1.4
116,264	-		EX31_RS10940	0.15	-0.5
116,264	-		EX31_RS10940	0.15	-1.4
116,264	-		EX31_RS10940	0.15	-0.3
116,348	+		EX31_RS10940	0.25	-0.8
116,348	+		EX31_RS10940	0.25	+0.0
116,348	+		EX31_RS10940	0.25	-0.1
116,349	-		EX31_RS10940	0.25	-0.1
116,349	-		EX31_RS10940	0.25	+1.4
116,357	+		EX31_RS10940	0.26	-0.0
116,357	+		EX31_RS10940	0.26	-0.4
116,357	+		EX31_RS10940	0.26	+0.6
116,357	+		EX31_RS10940	0.26	-0.2
116,357	+		EX31_RS10940	0.26	+0.6
116,357	+		EX31_RS10940	0.26	-0.6
116,357	+		EX31_RS10940	0.26	+1.1
116,358	-		EX31_RS10940	0.26	-1.5
116,358	-		EX31_RS10940	0.26	+0.4
116,358	-		EX31_RS10940	0.26	+0.3
116,424	-		EX31_RS10940	0.33	+0.5
116,424	-		EX31_RS10940	0.33	+0.2
116,481	-		EX31_RS10940	0.39	+0.5
116,513	+		EX31_RS10940	0.42	-1.3
116,513	+		EX31_RS10940	0.42	-0.6
116,514	-		EX31_RS10940	0.43	-0.0
116,514	-		EX31_RS10940	0.43	-0.1
116,542	-		EX31_RS10940	0.46	-1.1
116,563	+		EX31_RS10940	0.48	+0.0
116,564	-		EX31_RS10940	0.48	+0.1
116,572	-		EX31_RS10940	0.49	-1.7
116,668	+		EX31_RS10940	0.59	-0.1
116,668	+		EX31_RS10940	0.59	+1.3
116,668	+		EX31_RS10940	0.59	+0.6
116,668	+		EX31_RS10940	0.59	-0.4
116,668	+		EX31_RS10940	0.59	-1.0
116,669	-		EX31_RS10940	0.59	-1.0
116,752	-		EX31_RS10940	0.68	+0.4
116,758	+		EX31_RS10940	0.69	+0.6
116,758	+		EX31_RS10940	0.69	-0.7
116,759	-		EX31_RS10940	0.69	+0.3
116,759	-		EX31_RS10940	0.69	-0.1
116,759	-		EX31_RS10940	0.69	+0.6
116,816	+		EX31_RS10940	0.75	+0.7
116,816	+		EX31_RS10940	0.75	+0.1
116,819	+		EX31_RS10940	0.76	-0.5
116,819	+		EX31_RS10940	0.76	-2.0
116,819	+		EX31_RS10940	0.76	+0.4
116,820	-		EX31_RS10940	0.76	-0.3
116,820	-		EX31_RS10940	0.76	-2.0