Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS10325 and EX31_RS10330 overlap by 17 nucleotides EX31_RS10330 and EX31_RS10335 overlap by 4 nucleotides EX31_RS10335 and EX31_RS10340 are separated by 655 nucleotides
EX31_RS10325: EX31_RS10325 - 2-dehydro-3-deoxy-6-phosphogalactonate aldolase, at 279,212 to 279,829
_RS10325
EX31_RS10330: EX31_RS10330 - 2-dehydro-3-deoxygalactonokinase, at 279,813 to 280,709
_RS10330
EX31_RS10335: EX31_RS10335 - D-galactonate utilization transcriptional regulator DgoR, at 280,706 to 281,404
_RS10335
EX31_RS10340: EX31_RS10340 - GNAT family N-acetyltransferase, at 282,060 to 282,497
_RS10340
Position (kb) 280
281
282 Strain fitness (log2 ratio) -2
-1
0
1
2 at 279.946 kb on - strand, within EX31_RS10330 at 279.950 kb on + strand, within EX31_RS10330 at 279.951 kb on - strand, within EX31_RS10330 at 279.951 kb on - strand, within EX31_RS10330 at 280.051 kb on - strand, within EX31_RS10330 at 280.051 kb on - strand, within EX31_RS10330 at 280.051 kb on - strand, within EX31_RS10330 at 280.098 kb on - strand, within EX31_RS10330 at 280.264 kb on - strand, within EX31_RS10330 at 280.271 kb on + strand, within EX31_RS10330 at 280.272 kb on - strand, within EX31_RS10330 at 280.272 kb on - strand, within EX31_RS10330 at 280.272 kb on - strand, within EX31_RS10330 at 280.295 kb on - strand, within EX31_RS10330 at 280.295 kb on - strand, within EX31_RS10330 at 280.316 kb on + strand, within EX31_RS10330 at 280.317 kb on - strand, within EX31_RS10330 at 280.317 kb on - strand, within EX31_RS10330 at 280.317 kb on - strand, within EX31_RS10330 at 280.318 kb on + strand, within EX31_RS10330 at 280.319 kb on - strand, within EX31_RS10330 at 280.329 kb on + strand, within EX31_RS10330 at 280.330 kb on - strand, within EX31_RS10330 at 280.394 kb on + strand, within EX31_RS10330 at 280.435 kb on - strand, within EX31_RS10330 at 280.477 kb on + strand, within EX31_RS10330 at 280.477 kb on + strand, within EX31_RS10330 at 280.554 kb on + strand, within EX31_RS10330 at 280.635 kb on - strand at 280.651 kb on + strand at 280.696 kb on + strand at 280.696 kb on + strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.697 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.712 kb on - strand at 280.714 kb on + strand at 280.801 kb on - strand, within EX31_RS10335 at 280.801 kb on - strand, within EX31_RS10335 at 280.801 kb on - strand, within EX31_RS10335 at 280.801 kb on - strand, within EX31_RS10335 at 280.853 kb on - strand, within EX31_RS10335 at 280.854 kb on + strand, within EX31_RS10335 at 280.854 kb on + strand, within EX31_RS10335 at 280.854 kb on + strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.855 kb on - strand, within EX31_RS10335 at 280.881 kb on - strand, within EX31_RS10335 at 281.002 kb on + strand, within EX31_RS10335 at 281.003 kb on - strand, within EX31_RS10335 at 281.003 kb on - strand, within EX31_RS10335 at 281.003 kb on - strand, within EX31_RS10335 at 281.003 kb on - strand, within EX31_RS10335 at 281.089 kb on + strand, within EX31_RS10335 at 281.090 kb on - strand, within EX31_RS10335 at 281.170 kb on - strand, within EX31_RS10335 at 281.187 kb on - strand, within EX31_RS10335 at 281.187 kb on - strand, within EX31_RS10335 at 281.217 kb on - strand, within EX31_RS10335 at 281.332 kb on - strand, within EX31_RS10335 at 281.332 kb on - strand, within EX31_RS10335 at 281.332 kb on - strand, within EX31_RS10335 at 281.332 kb on - strand, within EX31_RS10335 at 281.332 kb on - strand, within EX31_RS10335 at 281.358 kb on - strand at 281.404 kb on + strand at 281.404 kb on + strand at 281.404 kb on + strand at 281.405 kb on - strand at 281.405 kb on - strand at 281.405 kb on - strand at 281.405 kb on - strand at 281.423 kb on + strand at 281.449 kb on - strand at 281.449 kb on - strand at 281.455 kb on - strand at 281.463 kb on + strand at 281.463 kb on + strand at 281.463 kb on + strand at 281.464 kb on - strand at 281.497 kb on - strand at 281.748 kb on + strand at 281.748 kb on + strand at 281.916 kb on + strand at 281.917 kb on - strand at 281.920 kb on + strand at 281.939 kb on + strand at 281.939 kb on + strand at 281.942 kb on + strand at 281.942 kb on + strand at 281.943 kb on - strand at 281.943 kb on - strand at 282.095 kb on - strand at 282.161 kb on + strand, within EX31_RS10340 at 282.162 kb on - strand, within EX31_RS10340 at 282.170 kb on + strand, within EX31_RS10340 at 282.226 kb on + strand, within EX31_RS10340 at 282.227 kb on - strand, within EX31_RS10340
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 279,946 - EX31_RS10330 0.15 -0.3 279,950 + EX31_RS10330 0.15 -0.5 279,951 - EX31_RS10330 0.15 -0.3 279,951 - EX31_RS10330 0.15 +0.3 280,051 - EX31_RS10330 0.27 -1.4 280,051 - EX31_RS10330 0.27 +0.1 280,051 - EX31_RS10330 0.27 -0.2 280,098 - EX31_RS10330 0.32 +0.2 280,264 - EX31_RS10330 0.50 -0.3 280,271 + EX31_RS10330 0.51 +0.4 280,272 - EX31_RS10330 0.51 -0.1 280,272 - EX31_RS10330 0.51 -0.3 280,272 - EX31_RS10330 0.51 +0.0 280,295 - EX31_RS10330 0.54 +0.3 280,295 - EX31_RS10330 0.54 -0.4 280,316 + EX31_RS10330 0.56 -0.6 280,317 - EX31_RS10330 0.56 +0.4 280,317 - EX31_RS10330 0.56 +0.1 280,317 - EX31_RS10330 0.56 +0.1 280,318 + EX31_RS10330 0.56 +0.1 280,319 - EX31_RS10330 0.56 -1.2 280,329 + EX31_RS10330 0.58 -0.4 280,330 - EX31_RS10330 0.58 +0.6 280,394 + EX31_RS10330 0.65 +0.5 280,435 - EX31_RS10330 0.69 +0.4 280,477 + EX31_RS10330 0.74 -1.4 280,477 + EX31_RS10330 0.74 -0.6 280,554 + EX31_RS10330 0.83 +0.1 280,635 - -1.5 280,651 + +0.3 280,696 + +0.3 280,696 + +1.1 280,697 - -0.7 280,697 - +0.4 280,697 - +0.1 280,697 - +0.4 280,697 - +0.5 280,712 - -0.3 280,712 - -1.7 280,712 - -0.6 280,712 - -0.2 280,712 - -1.1 280,714 + +0.3 280,801 - EX31_RS10335 0.14 +1.8 280,801 - EX31_RS10335 0.14 +1.2 280,801 - EX31_RS10335 0.14 +0.6 280,801 - EX31_RS10335 0.14 +0.9 280,853 - EX31_RS10335 0.21 +1.7 280,854 + EX31_RS10335 0.21 -0.7 280,854 + EX31_RS10335 0.21 +0.0 280,854 + EX31_RS10335 0.21 -1.9 280,855 - EX31_RS10335 0.21 +0.9 280,855 - EX31_RS10335 0.21 +1.0 280,855 - EX31_RS10335 0.21 +0.9 280,855 - EX31_RS10335 0.21 +0.5 280,855 - EX31_RS10335 0.21 +1.4 280,855 - EX31_RS10335 0.21 +0.7 280,855 - EX31_RS10335 0.21 +0.5 280,855 - EX31_RS10335 0.21 -0.6 280,855 - EX31_RS10335 0.21 +0.8 280,855 - EX31_RS10335 0.21 +1.8 280,855 - EX31_RS10335 0.21 +1.3 280,855 - EX31_RS10335 0.21 +1.2 280,855 - EX31_RS10335 0.21 +1.2 280,855 - EX31_RS10335 0.21 +1.0 280,855 - EX31_RS10335 0.21 +0.3 280,855 - EX31_RS10335 0.21 +1.3 280,855 - EX31_RS10335 0.21 +1.3 280,855 - EX31_RS10335 0.21 +1.1 280,881 - EX31_RS10335 0.25 +0.1 281,002 + EX31_RS10335 0.42 -1.7 281,003 - EX31_RS10335 0.42 -0.3 281,003 - EX31_RS10335 0.42 +1.8 281,003 - EX31_RS10335 0.42 +1.9 281,003 - EX31_RS10335 0.42 +1.1 281,089 + EX31_RS10335 0.55 +0.1 281,090 - EX31_RS10335 0.55 +0.8 281,170 - EX31_RS10335 0.66 +1.1 281,187 - EX31_RS10335 0.69 +1.5 281,187 - EX31_RS10335 0.69 +1.9 281,217 - EX31_RS10335 0.73 +1.6 281,332 - EX31_RS10335 0.90 +0.4 281,332 - EX31_RS10335 0.90 +1.4 281,332 - EX31_RS10335 0.90 +1.2 281,332 - EX31_RS10335 0.90 +2.0 281,332 - EX31_RS10335 0.90 +1.2 281,358 - +0.5 281,404 + +0.5 281,404 + -0.8 281,404 + +0.9 281,405 - +0.5 281,405 - -0.5 281,405 - -0.5 281,405 - +0.7 281,423 + -1.4 281,449 - -1.5 281,449 - +0.1 281,455 - +0.7 281,463 + +0.3 281,463 + -0.6 281,463 + -0.6 281,464 - +0.6 281,497 - -0.1 281,748 + -1.1 281,748 + -1.0 281,916 + -0.7 281,917 - -1.8 281,920 + -0.7 281,939 + +0.2 281,939 + -1.1 281,942 + +1.2 281,942 + -0.7 281,943 - +0.7 281,943 - +0.6 282,095 - -1.7 282,161 + EX31_RS10340 0.23 -1.0 282,162 - EX31_RS10340 0.23 +2.1 282,170 + EX31_RS10340 0.25 -0.5 282,226 + EX31_RS10340 0.38 -0.5 282,227 - EX31_RS10340 0.38 -2.0
Or see this region's nucleotide sequence