Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS09315 and EX31_RS09320 overlap by 4 nucleotides EX31_RS09320 and EX31_RS09325 are separated by 385 nucleotides
EX31_RS09315: EX31_RS09315 - nitrate reductase subunit beta, at 62,502 to 64,037
_RS09315
EX31_RS09320: EX31_RS09320 - nitrate reductase subunit alpha, at 64,034 to 67,798
_RS09320
EX31_RS09325: EX31_RS09325 - transporter, at 68,184 to 69,203
_RS09325
Position (kb) 64
65
66
67
68 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 63.146 kb on + strand, within EX31_RS09315 at 63.146 kb on + strand, within EX31_RS09315 at 63.163 kb on + strand, within EX31_RS09315 at 63.164 kb on - strand, within EX31_RS09315 at 63.217 kb on + strand, within EX31_RS09315 at 63.217 kb on + strand, within EX31_RS09315 at 63.218 kb on - strand, within EX31_RS09315 at 63.218 kb on - strand, within EX31_RS09315 at 63.218 kb on - strand, within EX31_RS09315 at 63.356 kb on - strand, within EX31_RS09315 at 63.436 kb on + strand, within EX31_RS09315 at 63.736 kb on + strand, within EX31_RS09315 at 63.740 kb on - strand, within EX31_RS09315 at 63.740 kb on - strand, within EX31_RS09315 at 63.959 kb on + strand at 64.071 kb on + strand at 64.072 kb on - strand at 64.158 kb on + strand at 64.161 kb on + strand at 64.162 kb on - strand at 64.244 kb on - strand at 64.305 kb on + strand at 64.305 kb on + strand at 64.305 kb on + strand at 64.306 kb on - strand at 64.460 kb on + strand, within EX31_RS09320 at 64.460 kb on + strand, within EX31_RS09320 at 64.461 kb on - strand, within EX31_RS09320 at 64.461 kb on - strand, within EX31_RS09320 at 64.488 kb on + strand, within EX31_RS09320 at 64.488 kb on + strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.489 kb on - strand, within EX31_RS09320 at 64.501 kb on + strand, within EX31_RS09320 at 64.726 kb on - strand, within EX31_RS09320 at 64.996 kb on - strand, within EX31_RS09320 at 65.103 kb on + strand, within EX31_RS09320 at 65.103 kb on + strand, within EX31_RS09320 at 65.103 kb on + strand, within EX31_RS09320 at 65.103 kb on + strand, within EX31_RS09320 at 65.104 kb on - strand, within EX31_RS09320 at 65.104 kb on - strand, within EX31_RS09320 at 65.306 kb on - strand, within EX31_RS09320 at 65.314 kb on - strand, within EX31_RS09320 at 65.449 kb on - strand, within EX31_RS09320 at 65.561 kb on + strand, within EX31_RS09320 at 65.578 kb on + strand, within EX31_RS09320 at 65.601 kb on + strand, within EX31_RS09320 at 65.613 kb on + strand, within EX31_RS09320 at 65.614 kb on - strand, within EX31_RS09320 at 65.856 kb on + strand, within EX31_RS09320 at 65.956 kb on - strand, within EX31_RS09320 at 65.956 kb on - strand, within EX31_RS09320 at 65.956 kb on - strand, within EX31_RS09320 at 66.060 kb on + strand, within EX31_RS09320 at 66.060 kb on + strand, within EX31_RS09320 at 66.060 kb on + strand, within EX31_RS09320 at 66.060 kb on + strand, within EX31_RS09320 at 66.061 kb on - strand, within EX31_RS09320 at 66.061 kb on - strand, within EX31_RS09320 at 66.061 kb on - strand, within EX31_RS09320 at 66.130 kb on - strand, within EX31_RS09320 at 66.285 kb on + strand, within EX31_RS09320 at 66.349 kb on - strand, within EX31_RS09320 at 66.733 kb on + strand, within EX31_RS09320 at 66.733 kb on + strand, within EX31_RS09320 at 66.734 kb on - strand, within EX31_RS09320 at 66.734 kb on - strand, within EX31_RS09320 at 66.747 kb on + strand, within EX31_RS09320 at 66.810 kb on + strand, within EX31_RS09320 at 66.811 kb on - strand, within EX31_RS09320 at 66.822 kb on + strand, within EX31_RS09320 at 66.823 kb on - strand, within EX31_RS09320 at 67.051 kb on + strand, within EX31_RS09320 at 67.051 kb on + strand, within EX31_RS09320 at 67.051 kb on + strand, within EX31_RS09320 at 67.051 kb on + strand, within EX31_RS09320 at 67.052 kb on - strand, within EX31_RS09320 at 67.052 kb on - strand, within EX31_RS09320 at 67.052 kb on - strand, within EX31_RS09320 at 67.052 kb on - strand, within EX31_RS09320 at 67.052 kb on - strand, within EX31_RS09320 at 67.053 kb on + strand, within EX31_RS09320 at 67.053 kb on + strand, within EX31_RS09320 at 67.053 kb on + strand, within EX31_RS09320 at 67.053 kb on + strand, within EX31_RS09320 at 67.054 kb on - strand, within EX31_RS09320 at 67.054 kb on - strand, within EX31_RS09320 at 67.054 kb on - strand, within EX31_RS09320 at 67.054 kb on - strand, within EX31_RS09320 at 67.054 kb on - strand, within EX31_RS09320 at 67.137 kb on + strand, within EX31_RS09320 at 67.147 kb on - strand, within EX31_RS09320 at 67.182 kb on + strand, within EX31_RS09320 at 67.200 kb on + strand, within EX31_RS09320 at 67.201 kb on - strand, within EX31_RS09320 at 67.243 kb on + strand, within EX31_RS09320 at 67.271 kb on - strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.272 kb on + strand, within EX31_RS09320 at 67.488 kb on + strand at 67.489 kb on - strand at 67.611 kb on + strand at 67.624 kb on + strand at 67.624 kb on + strand at 67.625 kb on - strand at 67.625 kb on - strand at 67.625 kb on - strand at 67.625 kb on - strand at 67.758 kb on - strand at 67.758 kb on - strand at 67.758 kb on - strand at 67.758 kb on - strand at 67.771 kb on - strand at 67.823 kb on + strand at 67.824 kb on - strand at 67.824 kb on - strand at 67.841 kb on - strand at 67.841 kb on - strand at 67.859 kb on - strand at 67.859 kb on - strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.864 kb on + strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.865 kb on - strand at 67.910 kb on + strand at 67.950 kb on + strand at 67.951 kb on - strand at 67.964 kb on + strand at 67.996 kb on + strand at 68.098 kb on + strand at 68.126 kb on + strand at 68.126 kb on + strand at 68.126 kb on + strand at 68.126 kb on + strand at 68.241 kb on + strand at 68.605 kb on + strand, within EX31_RS09325
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 63,146 + EX31_RS09315 0.42 -0.9 63,146 + EX31_RS09315 0.42 -0.9 63,163 + EX31_RS09315 0.43 -1.2 63,164 - EX31_RS09315 0.43 +0.1 63,217 + EX31_RS09315 0.47 -0.6 63,217 + EX31_RS09315 0.47 +0.0 63,218 - EX31_RS09315 0.47 -0.1 63,218 - EX31_RS09315 0.47 +0.2 63,218 - EX31_RS09315 0.47 +0.3 63,356 - EX31_RS09315 0.56 -1.1 63,436 + EX31_RS09315 0.61 -0.9 63,736 + EX31_RS09315 0.80 -1.1 63,740 - EX31_RS09315 0.81 +0.0 63,740 - EX31_RS09315 0.81 -1.6 63,959 + -1.4 64,071 + -0.2 64,072 - -0.6 64,158 + -1.1 64,161 + +0.4 64,162 - -1.4 64,244 - -0.4 64,305 + -1.8 64,305 + -0.2 64,305 + +0.7 64,306 - -0.4 64,460 + EX31_RS09320 0.11 -0.7 64,460 + EX31_RS09320 0.11 +0.8 64,461 - EX31_RS09320 0.11 +0.1 64,461 - EX31_RS09320 0.11 -1.6 64,488 + EX31_RS09320 0.12 -0.2 64,488 + EX31_RS09320 0.12 +1.0 64,489 - EX31_RS09320 0.12 +0.6 64,489 - EX31_RS09320 0.12 -1.6 64,489 - EX31_RS09320 0.12 -0.4 64,489 - EX31_RS09320 0.12 +0.2 64,501 + EX31_RS09320 0.12 +0.2 64,726 - EX31_RS09320 0.18 -0.4 64,996 - EX31_RS09320 0.26 +0.4 65,103 + EX31_RS09320 0.28 -1.0 65,103 + EX31_RS09320 0.28 -0.6 65,103 + EX31_RS09320 0.28 +0.2 65,103 + EX31_RS09320 0.28 -0.8 65,104 - EX31_RS09320 0.28 +1.4 65,104 - EX31_RS09320 0.28 -0.9 65,306 - EX31_RS09320 0.34 +0.1 65,314 - EX31_RS09320 0.34 -0.5 65,449 - EX31_RS09320 0.38 +0.1 65,561 + EX31_RS09320 0.41 -1.2 65,578 + EX31_RS09320 0.41 -0.5 65,601 + EX31_RS09320 0.42 -0.0 65,613 + EX31_RS09320 0.42 -0.3 65,614 - EX31_RS09320 0.42 +1.6 65,856 + EX31_RS09320 0.48 +0.9 65,956 - EX31_RS09320 0.51 -0.2 65,956 - EX31_RS09320 0.51 +0.0 65,956 - EX31_RS09320 0.51 -0.2 66,060 + EX31_RS09320 0.54 -0.2 66,060 + EX31_RS09320 0.54 -1.4 66,060 + EX31_RS09320 0.54 -1.0 66,060 + EX31_RS09320 0.54 +0.8 66,061 - EX31_RS09320 0.54 -1.1 66,061 - EX31_RS09320 0.54 +0.8 66,061 - EX31_RS09320 0.54 +0.5 66,130 - EX31_RS09320 0.56 +0.4 66,285 + EX31_RS09320 0.60 +1.2 66,349 - EX31_RS09320 0.61 +0.4 66,733 + EX31_RS09320 0.72 +1.2 66,733 + EX31_RS09320 0.72 -0.7 66,734 - EX31_RS09320 0.72 -1.8 66,734 - EX31_RS09320 0.72 +0.8 66,747 + EX31_RS09320 0.72 -1.0 66,810 + EX31_RS09320 0.74 -1.6 66,811 - EX31_RS09320 0.74 -0.2 66,822 + EX31_RS09320 0.74 -1.8 66,823 - EX31_RS09320 0.74 -0.1 67,051 + EX31_RS09320 0.80 -0.6 67,051 + EX31_RS09320 0.80 -1.3 67,051 + EX31_RS09320 0.80 +0.3 67,051 + EX31_RS09320 0.80 -0.9 67,052 - EX31_RS09320 0.80 -0.4 67,052 - EX31_RS09320 0.80 +0.8 67,052 - EX31_RS09320 0.80 -0.5 67,052 - EX31_RS09320 0.80 -0.8 67,052 - EX31_RS09320 0.80 -0.3 67,053 + EX31_RS09320 0.80 -1.3 67,053 + EX31_RS09320 0.80 -0.8 67,053 + EX31_RS09320 0.80 -0.6 67,053 + EX31_RS09320 0.80 -0.2 67,054 - EX31_RS09320 0.80 -0.3 67,054 - EX31_RS09320 0.80 -1.2 67,054 - EX31_RS09320 0.80 -2.3 67,054 - EX31_RS09320 0.80 +0.1 67,054 - EX31_RS09320 0.80 +1.3 67,137 + EX31_RS09320 0.82 +0.4 67,147 - EX31_RS09320 0.83 -0.1 67,182 + EX31_RS09320 0.84 -0.2 67,200 + EX31_RS09320 0.84 -2.3 67,201 - EX31_RS09320 0.84 +0.1 67,243 + EX31_RS09320 0.85 +0.8 67,271 - EX31_RS09320 0.86 +0.2 67,272 + EX31_RS09320 0.86 -1.0 67,272 + EX31_RS09320 0.86 -0.5 67,272 + EX31_RS09320 0.86 -0.5 67,272 + EX31_RS09320 0.86 +0.4 67,488 + -0.5 67,489 - +0.3 67,611 + -0.7 67,624 + -0.2 67,624 + +0.2 67,625 - -0.6 67,625 - -0.7 67,625 - -0.7 67,625 - +0.5 67,758 - -0.5 67,758 - +0.7 67,758 - +0.2 67,758 - -1.0 67,771 - -1.0 67,823 + +0.1 67,824 - -2.0 67,824 - -0.0 67,841 - -0.6 67,841 - -0.2 67,859 - -1.3 67,859 - -0.6 67,864 + +0.2 67,864 + +0.0 67,864 + +1.6 67,864 + +0.6 67,864 + -0.0 67,864 + -0.4 67,865 - -0.4 67,865 - -0.1 67,865 - -1.4 67,865 - -0.3 67,865 - +1.2 67,865 - +0.8 67,865 - -1.2 67,865 - +0.7 67,865 - +0.0 67,910 + -0.0 67,950 + -0.8 67,951 - +0.3 67,964 + -0.5 67,996 + -0.5 68,098 + +1.3 68,126 + +0.4 68,126 + -2.7 68,126 + -3.1 68,126 + +0.8 68,241 + +0.6 68,605 + EX31_RS09325 0.41 -0.7
Or see this region's nucleotide sequence