Strain Fitness in Rahnella sp. WP5 around EX31_RS09195

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS09185 and EX31_RS09190 are separated by 1 nucleotidesEX31_RS09190 and EX31_RS09195 are separated by 30 nucleotidesEX31_RS09195 and EX31_RS09200 are separated by 303 nucleotides EX31_RS09185: EX31_RS09185 - ABC transporter permease, at 34,188 to 35,132 _RS09185 EX31_RS09190: EX31_RS09190 - ABC transporter permease, at 35,134 to 36,009 _RS09190 EX31_RS09195: EX31_RS09195 - gamma-glutamyltransferase family protein, at 36,040 to 37,647 _RS09195 EX31_RS09200: EX31_RS09200 - dihydrodipicolinate synthase family protein, at 37,951 to 38,866 _RS09200 Position (kb) 36 37 38Strain fitness (log2 ratio) -2 -1 0 1 2at 35.097 kb on + strandat 35.098 kb on - strandat 35.098 kb on - strandat 35.473 kb on - strand, within EX31_RS09190at 35.683 kb on + strand, within EX31_RS09190at 35.683 kb on + strand, within EX31_RS09190at 35.684 kb on - strand, within EX31_RS09190at 35.685 kb on + strand, within EX31_RS09190at 35.685 kb on + strand, within EX31_RS09190at 35.738 kb on - strand, within EX31_RS09190at 35.738 kb on - strand, within EX31_RS09190at 35.802 kb on + strand, within EX31_RS09190at 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.037 kb on + strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.038 kb on - strandat 36.053 kb on - strandat 36.328 kb on + strand, within EX31_RS09195at 36.364 kb on + strand, within EX31_RS09195at 36.364 kb on + strand, within EX31_RS09195at 36.365 kb on - strand, within EX31_RS09195at 36.365 kb on - strand, within EX31_RS09195at 36.636 kb on - strand, within EX31_RS09195at 36.636 kb on - strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.978 kb on + strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 36.979 kb on - strand, within EX31_RS09195at 37.070 kb on - strand, within EX31_RS09195at 37.070 kb on - strand, within EX31_RS09195at 37.100 kb on - strand, within EX31_RS09195at 37.100 kb on - strand, within EX31_RS09195at 37.153 kb on + strand, within EX31_RS09195at 37.154 kb on - strand, within EX31_RS09195at 37.284 kb on + strand, within EX31_RS09195at 37.397 kb on - strand, within EX31_RS09195at 37.397 kb on - strand, within EX31_RS09195at 37.645 kb on + strandat 37.646 kb on - strandat 37.755 kb on + strandat 37.921 kb on - strandat 37.921 kb on - strandat 37.936 kb on - strandat 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.112 kb on + strand, within EX31_RS09200at 38.113 kb on - strand, within EX31_RS09200at 38.238 kb on + strand, within EX31_RS09200at 38.280 kb on - strand, within EX31_RS09200at 38.282 kb on + strand, within EX31_RS09200at 38.282 kb on + strand, within EX31_RS09200at 38.283 kb on - strand, within EX31_RS09200at 38.309 kb on + strand, within EX31_RS09200at 38.310 kb on - strand, within EX31_RS09200at 38.310 kb on - strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.360 kb on + strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.361 kb on - strand, within EX31_RS09200at 38.453 kb on - strand, within EX31_RS09200at 38.627 kb on + strand, within EX31_RS09200

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
35,097 + -0.2
35,098 - -0.3
35,098 - -1.0
35,473 - EX31_RS09190 0.39 -1.7
35,683 + EX31_RS09190 0.63 -0.1
35,683 + EX31_RS09190 0.63 +0.6
35,684 - EX31_RS09190 0.63 +0.8
35,685 + EX31_RS09190 0.63 +0.4
35,685 + EX31_RS09190 0.63 +0.5
35,738 - EX31_RS09190 0.69 +0.5
35,738 - EX31_RS09190 0.69 -2.3
35,802 + EX31_RS09190 0.76 +0.3
36,037 + -0.2
36,037 + +0.5
36,037 + -1.4
36,037 + +0.8
36,037 + -0.1
36,037 + -0.5
36,037 + +0.2
36,037 + +1.1
36,037 + +1.2
36,038 - -1.3
36,038 - -0.2
36,038 - +0.0
36,038 - +0.3
36,038 - -2.1
36,053 - -1.0
36,328 + EX31_RS09195 0.18 +0.1
36,364 + EX31_RS09195 0.20 +0.1
36,364 + EX31_RS09195 0.20 +0.1
36,365 - EX31_RS09195 0.20 +1.1
36,365 - EX31_RS09195 0.20 +0.6
36,636 - EX31_RS09195 0.37 -0.2
36,636 - EX31_RS09195 0.37 -1.0
36,978 + EX31_RS09195 0.58 +0.3
36,978 + EX31_RS09195 0.58 +0.2
36,978 + EX31_RS09195 0.58 -2.4
36,979 - EX31_RS09195 0.58 -0.2
36,979 - EX31_RS09195 0.58 -1.1
36,979 - EX31_RS09195 0.58 -1.4
36,979 - EX31_RS09195 0.58 +0.0
37,070 - EX31_RS09195 0.64 +0.2
37,070 - EX31_RS09195 0.64 +2.0
37,100 - EX31_RS09195 0.66 -1.2
37,100 - EX31_RS09195 0.66 -1.8
37,153 + EX31_RS09195 0.69 +0.1
37,154 - EX31_RS09195 0.69 -2.0
37,284 + EX31_RS09195 0.77 +0.1
37,397 - EX31_RS09195 0.84 +0.4
37,397 - EX31_RS09195 0.84 -0.2
37,645 + -1.2
37,646 - -0.5
37,755 + +0.1
37,921 - +0.3
37,921 - +2.1
37,936 - -0.8
38,112 + EX31_RS09200 0.18 +0.4
38,112 + EX31_RS09200 0.18 -0.6
38,112 + EX31_RS09200 0.18 +2.3
38,112 + EX31_RS09200 0.18 -1.0
38,113 - EX31_RS09200 0.18 -0.8
38,238 + EX31_RS09200 0.31 -0.5
38,280 - EX31_RS09200 0.36 -1.6
38,282 + EX31_RS09200 0.36 +0.8
38,282 + EX31_RS09200 0.36 +1.1
38,283 - EX31_RS09200 0.36 -0.4
38,309 + EX31_RS09200 0.39 -0.2
38,310 - EX31_RS09200 0.39 -0.0
38,310 - EX31_RS09200 0.39 -0.1
38,360 + EX31_RS09200 0.45 -0.8
38,360 + EX31_RS09200 0.45 +1.7
38,360 + EX31_RS09200 0.45 +0.4
38,360 + EX31_RS09200 0.45 -0.6
38,360 + EX31_RS09200 0.45 -0.5
38,360 + EX31_RS09200 0.45 +0.1
38,360 + EX31_RS09200 0.45 +1.4
38,360 + EX31_RS09200 0.45 -0.9
38,360 + EX31_RS09200 0.45 +0.0
38,360 + EX31_RS09200 0.45 -0.9
38,361 - EX31_RS09200 0.45 -0.6
38,361 - EX31_RS09200 0.45 -1.6
38,361 - EX31_RS09200 0.45 -1.4
38,361 - EX31_RS09200 0.45 -0.5
38,453 - EX31_RS09200 0.55 +0.3
38,627 + EX31_RS09200 0.74 -0.0

Or see this region's nucleotide sequence