Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08785 and EX31_RS08790 are separated by 41 nucleotides EX31_RS08790 and EX31_RS08795 are separated by 227 nucleotides
EX31_RS08785: EX31_RS08785 - ribonuclease R, at 266,480 to 268,978
_RS08785
EX31_RS08790: EX31_RS08790 - nitric oxide-sensing transcriptional repressor NsrR, at 269,020 to 269,445
_RS08790
EX31_RS08795: EX31_RS08795 - adenylosuccinate synthase, at 269,673 to 270,971
_RS08795
Position (kb) 269
270 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 268.062 kb on + strand, within EX31_RS08785 at 268.062 kb on + strand, within EX31_RS08785 at 268.062 kb on + strand, within EX31_RS08785 at 268.062 kb on + strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.063 kb on - strand, within EX31_RS08785 at 268.066 kb on - strand, within EX31_RS08785 at 268.066 kb on - strand, within EX31_RS08785 at 268.066 kb on - strand, within EX31_RS08785 at 268.125 kb on + strand, within EX31_RS08785 at 268.125 kb on + strand, within EX31_RS08785 at 268.126 kb on - strand, within EX31_RS08785 at 268.126 kb on - strand, within EX31_RS08785 at 268.126 kb on - strand, within EX31_RS08785 at 268.126 kb on - strand, within EX31_RS08785 at 268.188 kb on - strand, within EX31_RS08785 at 268.327 kb on + strand, within EX31_RS08785 at 268.404 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.405 kb on + strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.406 kb on - strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.407 kb on + strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.408 kb on - strand, within EX31_RS08785 at 268.451 kb on - strand, within EX31_RS08785 at 268.509 kb on + strand, within EX31_RS08785 at 268.576 kb on + strand, within EX31_RS08785 at 268.576 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.650 kb on + strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.651 kb on - strand, within EX31_RS08785 at 268.775 kb on + strand at 268.775 kb on + strand at 268.775 kb on + strand at 268.776 kb on - strand at 268.927 kb on + strand at 268.927 kb on + strand at 268.928 kb on - strand at 268.928 kb on - strand at 268.979 kb on - strand at 269.036 kb on - strand at 269.036 kb on - strand at 269.041 kb on - strand at 269.043 kb on - strand at 269.068 kb on - strand, within EX31_RS08790 at 269.081 kb on + strand, within EX31_RS08790 at 269.082 kb on - strand, within EX31_RS08790 at 269.082 kb on - strand, within EX31_RS08790 at 269.082 kb on - strand, within EX31_RS08790 at 269.110 kb on + strand, within EX31_RS08790 at 269.110 kb on + strand, within EX31_RS08790 at 269.111 kb on - strand, within EX31_RS08790 at 269.111 kb on - strand, within EX31_RS08790 at 269.111 kb on - strand, within EX31_RS08790 at 269.134 kb on + strand, within EX31_RS08790 at 269.135 kb on - strand, within EX31_RS08790 at 269.250 kb on + strand, within EX31_RS08790 at 269.253 kb on + strand, within EX31_RS08790 at 269.253 kb on + strand, within EX31_RS08790 at 269.254 kb on - strand, within EX31_RS08790 at 269.254 kb on - strand, within EX31_RS08790 at 269.254 kb on - strand, within EX31_RS08790 at 269.308 kb on - strand, within EX31_RS08790 at 269.342 kb on + strand, within EX31_RS08790 at 269.342 kb on + strand, within EX31_RS08790 at 269.343 kb on - strand, within EX31_RS08790 at 269.397 kb on + strand, within EX31_RS08790 at 269.397 kb on + strand, within EX31_RS08790 at 269.397 kb on + strand, within EX31_RS08790 at 269.399 kb on + strand, within EX31_RS08790 at 269.399 kb on + strand, within EX31_RS08790 at 269.399 kb on + strand, within EX31_RS08790 at 269.399 kb on + strand, within EX31_RS08790 at 269.399 kb on + strand, within EX31_RS08790 at 269.400 kb on - strand, within EX31_RS08790 at 269.400 kb on - strand, within EX31_RS08790 at 269.400 kb on - strand, within EX31_RS08790 at 269.420 kb on + strand at 269.420 kb on + strand at 269.421 kb on - strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.449 kb on + strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.450 kb on - strand at 269.460 kb on - strand at 269.460 kb on - strand at 269.463 kb on + strand at 269.463 kb on + strand at 269.463 kb on + strand at 269.463 kb on + strand at 269.463 kb on + strand at 269.463 kb on + strand at 269.464 kb on - strand at 269.464 kb on - strand at 269.515 kb on + strand at 269.516 kb on - strand at 269.516 kb on - strand at 269.516 kb on - strand at 269.516 kb on - strand at 269.516 kb on - strand at 269.518 kb on + strand at 269.519 kb on - strand at 269.534 kb on + strand at 269.558 kb on + strand at 269.558 kb on + strand at 269.558 kb on + strand at 269.559 kb on - strand at 269.566 kb on + strand at 269.566 kb on + strand at 269.566 kb on + strand at 269.567 kb on - strand at 269.567 kb on - strand at 269.567 kb on - strand at 269.567 kb on - strand at 269.567 kb on - strand at 269.567 kb on - strand at 269.570 kb on + strand at 269.570 kb on + strand at 269.570 kb on + strand at 269.570 kb on + strand at 269.582 kb on + strand at 269.591 kb on + strand at 269.591 kb on + strand at 269.592 kb on - strand at 269.675 kb on - strand at 269.675 kb on - strand at 269.675 kb on - strand at 269.675 kb on - strand at 269.675 kb on - strand at 269.675 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 268,062 + EX31_RS08785 0.63 -0.3 268,062 + EX31_RS08785 0.63 -0.3 268,062 + EX31_RS08785 0.63 -2.2 268,062 + EX31_RS08785 0.63 -0.3 268,063 - EX31_RS08785 0.63 +0.3 268,063 - EX31_RS08785 0.63 +0.1 268,063 - EX31_RS08785 0.63 -1.4 268,063 - EX31_RS08785 0.63 +0.8 268,063 - EX31_RS08785 0.63 -0.0 268,063 - EX31_RS08785 0.63 +0.5 268,063 - EX31_RS08785 0.63 -0.2 268,066 - EX31_RS08785 0.63 -0.5 268,066 - EX31_RS08785 0.63 +0.0 268,066 - EX31_RS08785 0.63 -0.3 268,125 + EX31_RS08785 0.66 -0.4 268,125 + EX31_RS08785 0.66 +0.2 268,126 - EX31_RS08785 0.66 +0.5 268,126 - EX31_RS08785 0.66 +0.8 268,126 - EX31_RS08785 0.66 +0.2 268,126 - EX31_RS08785 0.66 +0.2 268,188 - EX31_RS08785 0.68 +0.5 268,327 + EX31_RS08785 0.74 -0.4 268,404 + EX31_RS08785 0.77 -1.2 268,405 + EX31_RS08785 0.77 -0.2 268,405 + EX31_RS08785 0.77 +2.8 268,405 + EX31_RS08785 0.77 -1.4 268,405 + EX31_RS08785 0.77 -0.5 268,405 + EX31_RS08785 0.77 -0.4 268,405 + EX31_RS08785 0.77 -1.6 268,405 + EX31_RS08785 0.77 -0.4 268,405 + EX31_RS08785 0.77 -0.6 268,405 + EX31_RS08785 0.77 +0.3 268,405 + EX31_RS08785 0.77 +0.6 268,405 + EX31_RS08785 0.77 -0.3 268,405 + EX31_RS08785 0.77 +0.2 268,405 + EX31_RS08785 0.77 +0.4 268,405 + EX31_RS08785 0.77 -1.1 268,405 + EX31_RS08785 0.77 -0.0 268,405 + EX31_RS08785 0.77 -0.4 268,405 + EX31_RS08785 0.77 -0.3 268,405 + EX31_RS08785 0.77 -0.5 268,405 + EX31_RS08785 0.77 +0.1 268,405 + EX31_RS08785 0.77 -1.8 268,405 + EX31_RS08785 0.77 -0.8 268,405 + EX31_RS08785 0.77 -0.1 268,405 + EX31_RS08785 0.77 +0.0 268,405 + EX31_RS08785 0.77 -0.4 268,405 + EX31_RS08785 0.77 +0.2 268,405 + EX31_RS08785 0.77 +0.7 268,405 + EX31_RS08785 0.77 -0.3 268,405 + EX31_RS08785 0.77 -0.2 268,405 + EX31_RS08785 0.77 -0.8 268,405 + EX31_RS08785 0.77 +0.4 268,405 + EX31_RS08785 0.77 +0.7 268,406 - EX31_RS08785 0.77 -0.6 268,406 - EX31_RS08785 0.77 -0.2 268,406 - EX31_RS08785 0.77 +0.5 268,406 - EX31_RS08785 0.77 -0.3 268,406 - EX31_RS08785 0.77 +0.7 268,406 - EX31_RS08785 0.77 +0.0 268,406 - EX31_RS08785 0.77 +0.3 268,406 - EX31_RS08785 0.77 +0.1 268,406 - EX31_RS08785 0.77 -0.7 268,406 - EX31_RS08785 0.77 +0.1 268,406 - EX31_RS08785 0.77 +0.2 268,406 - EX31_RS08785 0.77 +0.7 268,406 - EX31_RS08785 0.77 -0.3 268,406 - EX31_RS08785 0.77 +2.0 268,406 - EX31_RS08785 0.77 +0.2 268,406 - EX31_RS08785 0.77 +0.9 268,406 - EX31_RS08785 0.77 +1.2 268,406 - EX31_RS08785 0.77 -0.3 268,406 - EX31_RS08785 0.77 -0.2 268,406 - EX31_RS08785 0.77 +0.0 268,406 - EX31_RS08785 0.77 +1.2 268,406 - EX31_RS08785 0.77 +0.3 268,406 - EX31_RS08785 0.77 +0.8 268,406 - EX31_RS08785 0.77 -0.0 268,406 - EX31_RS08785 0.77 +0.2 268,406 - EX31_RS08785 0.77 +0.6 268,406 - EX31_RS08785 0.77 +0.9 268,406 - EX31_RS08785 0.77 +0.1 268,406 - EX31_RS08785 0.77 +0.8 268,406 - EX31_RS08785 0.77 +0.5 268,406 - EX31_RS08785 0.77 -1.4 268,406 - EX31_RS08785 0.77 +0.4 268,406 - EX31_RS08785 0.77 +0.4 268,406 - EX31_RS08785 0.77 +0.3 268,406 - EX31_RS08785 0.77 +0.0 268,406 - EX31_RS08785 0.77 +0.6 268,406 - EX31_RS08785 0.77 +0.8 268,406 - EX31_RS08785 0.77 +0.7 268,406 - EX31_RS08785 0.77 -0.1 268,406 - EX31_RS08785 0.77 +0.1 268,406 - EX31_RS08785 0.77 +0.3 268,406 - EX31_RS08785 0.77 +0.0 268,406 - EX31_RS08785 0.77 +0.2 268,406 - EX31_RS08785 0.77 +0.0 268,406 - EX31_RS08785 0.77 +0.5 268,406 - EX31_RS08785 0.77 +0.3 268,406 - EX31_RS08785 0.77 +0.1 268,406 - EX31_RS08785 0.77 +0.2 268,407 + EX31_RS08785 0.77 -1.7 268,407 + EX31_RS08785 0.77 +1.0 268,407 + EX31_RS08785 0.77 -0.3 268,407 + EX31_RS08785 0.77 +0.1 268,407 + EX31_RS08785 0.77 -0.8 268,407 + EX31_RS08785 0.77 -0.4 268,407 + EX31_RS08785 0.77 +1.0 268,408 - EX31_RS08785 0.77 +1.0 268,408 - EX31_RS08785 0.77 +0.2 268,408 - EX31_RS08785 0.77 +0.6 268,408 - EX31_RS08785 0.77 -0.4 268,408 - EX31_RS08785 0.77 +1.1 268,408 - EX31_RS08785 0.77 -0.0 268,408 - EX31_RS08785 0.77 +1.3 268,408 - EX31_RS08785 0.77 -0.9 268,408 - EX31_RS08785 0.77 +0.9 268,408 - EX31_RS08785 0.77 +0.4 268,451 - EX31_RS08785 0.79 +0.1 268,509 + EX31_RS08785 0.81 +0.5 268,576 + EX31_RS08785 0.84 +0.5 268,576 + EX31_RS08785 0.84 -0.1 268,650 + EX31_RS08785 0.87 -0.0 268,650 + EX31_RS08785 0.87 -0.3 268,650 + EX31_RS08785 0.87 -0.2 268,650 + EX31_RS08785 0.87 -0.5 268,650 + EX31_RS08785 0.87 -0.7 268,650 + EX31_RS08785 0.87 +0.2 268,650 + EX31_RS08785 0.87 +0.8 268,650 + EX31_RS08785 0.87 -0.2 268,651 - EX31_RS08785 0.87 -1.6 268,651 - EX31_RS08785 0.87 +0.3 268,651 - EX31_RS08785 0.87 +0.4 268,651 - EX31_RS08785 0.87 +0.5 268,651 - EX31_RS08785 0.87 -0.0 268,651 - EX31_RS08785 0.87 +0.5 268,651 - EX31_RS08785 0.87 -0.9 268,775 + -0.1 268,775 + -0.2 268,775 + -1.3 268,776 - +1.1 268,927 + -0.0 268,927 + -1.4 268,928 - +0.3 268,928 - -0.4 268,979 - +2.0 269,036 - -0.6 269,036 - +0.2 269,041 - -0.8 269,043 - +0.4 269,068 - EX31_RS08790 0.11 -0.3 269,081 + EX31_RS08790 0.14 +0.5 269,082 - EX31_RS08790 0.15 -2.4 269,082 - EX31_RS08790 0.15 -0.4 269,082 - EX31_RS08790 0.15 +0.5 269,110 + EX31_RS08790 0.21 -0.0 269,110 + EX31_RS08790 0.21 -0.5 269,111 - EX31_RS08790 0.21 -1.3 269,111 - EX31_RS08790 0.21 +0.3 269,111 - EX31_RS08790 0.21 +1.8 269,134 + EX31_RS08790 0.27 -0.2 269,135 - EX31_RS08790 0.27 +1.4 269,250 + EX31_RS08790 0.54 -0.8 269,253 + EX31_RS08790 0.55 -0.9 269,253 + EX31_RS08790 0.55 -1.8 269,254 - EX31_RS08790 0.55 +0.1 269,254 - EX31_RS08790 0.55 +0.6 269,254 - EX31_RS08790 0.55 -0.2 269,308 - EX31_RS08790 0.68 +0.7 269,342 + EX31_RS08790 0.76 +0.0 269,342 + EX31_RS08790 0.76 +0.3 269,343 - EX31_RS08790 0.76 -0.6 269,397 + EX31_RS08790 0.88 -0.3 269,397 + EX31_RS08790 0.88 -1.1 269,397 + EX31_RS08790 0.88 -0.8 269,399 + EX31_RS08790 0.89 +0.5 269,399 + EX31_RS08790 0.89 -1.0 269,399 + EX31_RS08790 0.89 -0.6 269,399 + EX31_RS08790 0.89 +0.6 269,399 + EX31_RS08790 0.89 -0.1 269,400 - EX31_RS08790 0.89 +0.7 269,400 - EX31_RS08790 0.89 -1.1 269,400 - EX31_RS08790 0.89 +0.7 269,420 + +0.4 269,420 + -0.1 269,421 - +0.8 269,449 + -0.1 269,449 + +0.5 269,449 + -1.0 269,449 + -1.0 269,449 + -0.3 269,449 + +0.5 269,449 + -0.5 269,449 + +0.3 269,449 + -0.1 269,449 + +0.4 269,450 - -0.9 269,450 - +0.2 269,450 - +1.0 269,450 - +0.4 269,450 - -0.5 269,450 - -0.2 269,450 - +0.1 269,450 - +0.0 269,460 - +0.2 269,460 - -0.4 269,463 + -0.2 269,463 + +0.3 269,463 + +0.8 269,463 + +0.4 269,463 + -0.2 269,463 + -0.0 269,464 - +0.1 269,464 - -0.1 269,515 + +0.5 269,516 - -1.3 269,516 - -0.7 269,516 - -0.1 269,516 - -0.1 269,516 - +0.0 269,518 + -0.9 269,519 - -0.6 269,534 + +0.3 269,558 + -0.5 269,558 + -0.6 269,558 + -0.5 269,559 - -0.3 269,566 + +0.3 269,566 + -2.0 269,566 + +0.1 269,567 - -0.0 269,567 - +0.5 269,567 - -0.8 269,567 - -0.2 269,567 - -0.0 269,567 - -0.3 269,570 + -0.0 269,570 + -0.4 269,570 + +0.8 269,570 + +1.3 269,582 + -0.9 269,591 + +1.9 269,591 + -0.4 269,592 - -0.2 269,675 - +0.9 269,675 - +0.6 269,675 - +0.5 269,675 - +0.0 269,675 - +0.9 269,675 - +0.1
Or see this region's nucleotide sequence