Strain Fitness in Rahnella sp. WP5 around EX31_RS05290

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05285 and EX31_RS05290 are separated by 84 nucleotidesEX31_RS05290 and EX31_RS05295 are separated by 132 nucleotides EX31_RS05285: EX31_RS05285 - MFS transporter, at 194,405 to 195,904 _RS05285 EX31_RS05290: EX31_RS05290 - TetR/AcrR family transcriptional regulator, at 195,989 to 196,690 _RS05290 EX31_RS05295: EX31_RS05295 - MFS transporter, at 196,823 to 198,037 _RS05295 Position (kb) 195 196 197Strain fitness (log2 ratio) -2 -1 0 1 2at 195.012 kb on + strand, within EX31_RS05285at 195.012 kb on + strand, within EX31_RS05285at 195.012 kb on + strand, within EX31_RS05285at 195.012 kb on + strand, within EX31_RS05285at 195.012 kb on + strand, within EX31_RS05285at 195.012 kb on + strand, within EX31_RS05285at 195.013 kb on - strand, within EX31_RS05285at 195.059 kb on - strand, within EX31_RS05285at 195.059 kb on - strand, within EX31_RS05285at 195.059 kb on - strand, within EX31_RS05285at 195.144 kb on + strand, within EX31_RS05285at 195.144 kb on + strand, within EX31_RS05285at 195.145 kb on - strand, within EX31_RS05285at 195.148 kb on + strand, within EX31_RS05285at 195.148 kb on + strand, within EX31_RS05285at 195.149 kb on - strand, within EX31_RS05285at 195.149 kb on - strand, within EX31_RS05285at 195.213 kb on + strand, within EX31_RS05285at 195.213 kb on + strand, within EX31_RS05285at 195.213 kb on + strand, within EX31_RS05285at 195.214 kb on - strand, within EX31_RS05285at 195.214 kb on - strand, within EX31_RS05285at 195.375 kb on + strand, within EX31_RS05285at 195.375 kb on + strand, within EX31_RS05285at 195.375 kb on + strand, within EX31_RS05285at 195.397 kb on + strand, within EX31_RS05285at 195.397 kb on + strand, within EX31_RS05285at 195.397 kb on + strand, within EX31_RS05285at 195.397 kb on + strand, within EX31_RS05285at 195.397 kb on + strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.398 kb on - strand, within EX31_RS05285at 195.452 kb on + strand, within EX31_RS05285at 195.453 kb on - strand, within EX31_RS05285at 195.453 kb on - strand, within EX31_RS05285at 195.453 kb on - strand, within EX31_RS05285at 195.453 kb on - strand, within EX31_RS05285at 195.474 kb on + strand, within EX31_RS05285at 195.474 kb on + strand, within EX31_RS05285at 195.475 kb on - strand, within EX31_RS05285at 195.500 kb on - strand, within EX31_RS05285at 195.520 kb on + strand, within EX31_RS05285at 195.521 kb on - strand, within EX31_RS05285at 195.608 kb on + strand, within EX31_RS05285at 195.609 kb on - strand, within EX31_RS05285at 195.679 kb on + strand, within EX31_RS05285at 195.680 kb on - strand, within EX31_RS05285at 195.717 kb on + strand, within EX31_RS05285at 195.717 kb on + strand, within EX31_RS05285at 195.718 kb on - strand, within EX31_RS05285at 195.718 kb on - strand, within EX31_RS05285at 195.718 kb on - strand, within EX31_RS05285at 195.718 kb on - strand, within EX31_RS05285at 195.718 kb on - strand, within EX31_RS05285at 195.718 kb on - strand, within EX31_RS05285at 195.894 kb on - strandat 195.894 kb on - strandat 195.989 kb on - strandat 196.102 kb on + strand, within EX31_RS05290at 196.201 kb on + strand, within EX31_RS05290at 196.202 kb on - strand, within EX31_RS05290at 196.220 kb on + strand, within EX31_RS05290at 196.220 kb on + strand, within EX31_RS05290at 196.220 kb on + strand, within EX31_RS05290at 196.220 kb on + strand, within EX31_RS05290at 196.220 kb on + strand, within EX31_RS05290at 196.339 kb on + strand, within EX31_RS05290at 196.339 kb on + strand, within EX31_RS05290at 196.339 kb on + strand, within EX31_RS05290at 196.339 kb on + strand, within EX31_RS05290at 196.339 kb on + strand, within EX31_RS05290at 196.339 kb on + strand, within EX31_RS05290at 196.340 kb on - strand, within EX31_RS05290at 196.340 kb on - strand, within EX31_RS05290at 196.342 kb on + strand, within EX31_RS05290at 196.343 kb on - strand, within EX31_RS05290at 196.426 kb on + strand, within EX31_RS05290at 196.454 kb on - strand, within EX31_RS05290at 196.639 kb on + strandat 196.686 kb on + strandat 196.686 kb on + strandat 196.687 kb on - strandat 196.688 kb on + strandat 196.688 kb on + strandat 196.689 kb on - strandat 196.689 kb on - strandat 196.689 kb on - strandat 196.732 kb on + strandat 196.732 kb on + strandat 196.733 kb on - strandat 196.733 kb on - strandat 196.777 kb on - strandat 196.777 kb on - strandat 196.912 kb on + strandat 196.912 kb on + strandat 196.912 kb on + strandat 196.912 kb on + strandat 196.912 kb on + strandat 196.912 kb on + strandat 196.913 kb on - strandat 196.913 kb on - strandat 196.913 kb on - strandat 196.917 kb on - strandat 196.917 kb on - strandat 196.917 kb on - strandat 196.917 kb on - strandat 196.931 kb on + strandat 196.932 kb on - strandat 196.932 kb on - strandat 196.932 kb on - strandat 196.996 kb on + strand, within EX31_RS05295at 196.997 kb on - strand, within EX31_RS05295at 197.013 kb on - strand, within EX31_RS05295at 197.024 kb on - strand, within EX31_RS05295at 197.047 kb on + strand, within EX31_RS05295at 197.083 kb on - strand, within EX31_RS05295at 197.179 kb on + strand, within EX31_RS05295at 197.231 kb on + strand, within EX31_RS05295at 197.231 kb on + strand, within EX31_RS05295at 197.231 kb on + strand, within EX31_RS05295at 197.232 kb on - strand, within EX31_RS05295at 197.326 kb on - strand, within EX31_RS05295at 197.475 kb on - strand, within EX31_RS05295at 197.475 kb on - strand, within EX31_RS05295at 197.475 kb on - strand, within EX31_RS05295at 197.529 kb on - strand, within EX31_RS05295at 197.529 kb on - strand, within EX31_RS05295at 197.573 kb on + strand, within EX31_RS05295at 197.617 kb on + strand, within EX31_RS05295at 197.618 kb on - strand, within EX31_RS05295at 197.630 kb on + strand, within EX31_RS05295at 197.631 kb on - strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.634 kb on + strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.635 kb on - strand, within EX31_RS05295at 197.637 kb on + strand, within EX31_RS05295at 197.637 kb on + strand, within EX31_RS05295at 197.638 kb on - strand, within EX31_RS05295at 197.638 kb on - strand, within EX31_RS05295at 197.638 kb on - strand, within EX31_RS05295

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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195,012 + EX31_RS05285 0.40 -0.1
195,012 + EX31_RS05285 0.40 -0.8
195,012 + EX31_RS05285 0.40 -0.2
195,012 + EX31_RS05285 0.40 -1.1
195,012 + EX31_RS05285 0.40 -1.5
195,012 + EX31_RS05285 0.40 -0.3
195,013 - EX31_RS05285 0.41 +1.3
195,059 - EX31_RS05285 0.44 +0.4
195,059 - EX31_RS05285 0.44 +0.4
195,059 - EX31_RS05285 0.44 -0.8
195,144 + EX31_RS05285 0.49 -0.2
195,144 + EX31_RS05285 0.49 -0.5
195,145 - EX31_RS05285 0.49 -0.6
195,148 + EX31_RS05285 0.50 -1.2
195,148 + EX31_RS05285 0.50 +0.2
195,149 - EX31_RS05285 0.50 -0.4
195,149 - EX31_RS05285 0.50 -0.5
195,213 + EX31_RS05285 0.54 -0.4
195,213 + EX31_RS05285 0.54 -0.3
195,213 + EX31_RS05285 0.54 -0.4
195,214 - EX31_RS05285 0.54 +0.3
195,214 - EX31_RS05285 0.54 +1.0
195,375 + EX31_RS05285 0.65 -0.5
195,375 + EX31_RS05285 0.65 -0.2
195,375 + EX31_RS05285 0.65 -0.8
195,397 + EX31_RS05285 0.66 -0.3
195,397 + EX31_RS05285 0.66 -0.0
195,397 + EX31_RS05285 0.66 -1.5
195,397 + EX31_RS05285 0.66 -1.1
195,397 + EX31_RS05285 0.66 +0.6
195,398 - EX31_RS05285 0.66 -0.1
195,398 - EX31_RS05285 0.66 +0.2
195,398 - EX31_RS05285 0.66 -0.0
195,398 - EX31_RS05285 0.66 -0.5
195,398 - EX31_RS05285 0.66 -0.7
195,398 - EX31_RS05285 0.66 -0.2
195,398 - EX31_RS05285 0.66 +0.3
195,398 - EX31_RS05285 0.66 -1.7
195,452 + EX31_RS05285 0.70 +0.1
195,453 - EX31_RS05285 0.70 +0.5
195,453 - EX31_RS05285 0.70 -0.9
195,453 - EX31_RS05285 0.70 +0.5
195,453 - EX31_RS05285 0.70 -0.2
195,474 + EX31_RS05285 0.71 +0.0
195,474 + EX31_RS05285 0.71 -0.5
195,475 - EX31_RS05285 0.71 +0.2
195,500 - EX31_RS05285 0.73 +0.6
195,520 + EX31_RS05285 0.74 -0.4
195,521 - EX31_RS05285 0.74 +0.2
195,608 + EX31_RS05285 0.80 -0.1
195,609 - EX31_RS05285 0.80 +0.1
195,679 + EX31_RS05285 0.85 -0.1
195,680 - EX31_RS05285 0.85 +0.3
195,717 + EX31_RS05285 0.87 +0.6
195,717 + EX31_RS05285 0.87 +0.2
195,718 - EX31_RS05285 0.88 -1.1
195,718 - EX31_RS05285 0.88 +0.9
195,718 - EX31_RS05285 0.88 +0.7
195,718 - EX31_RS05285 0.88 -0.9
195,718 - EX31_RS05285 0.88 +0.7
195,718 - EX31_RS05285 0.88 -1.2
195,894 - +0.2
195,894 - +0.2
195,989 - +0.1
196,102 + EX31_RS05290 0.16 +2.3
196,201 + EX31_RS05290 0.30 +2.0
196,202 - EX31_RS05290 0.30 -2.3
196,220 + EX31_RS05290 0.33 +1.5
196,220 + EX31_RS05290 0.33 +2.1
196,220 + EX31_RS05290 0.33 +1.2
196,220 + EX31_RS05290 0.33 +1.1
196,220 + EX31_RS05290 0.33 +1.8
196,339 + EX31_RS05290 0.50 +2.2
196,339 + EX31_RS05290 0.50 +2.3
196,339 + EX31_RS05290 0.50 +2.1
196,339 + EX31_RS05290 0.50 +2.3
196,339 + EX31_RS05290 0.50 +1.8
196,339 + EX31_RS05290 0.50 +1.7
196,340 - EX31_RS05290 0.50 -1.2
196,340 - EX31_RS05290 0.50 -0.4
196,342 + EX31_RS05290 0.50 +1.7
196,343 - EX31_RS05290 0.50 -1.7
196,426 + EX31_RS05290 0.62 +1.5
196,454 - EX31_RS05290 0.66 +0.3
196,639 + +0.7
196,686 + -0.3
196,686 + -0.6
196,687 - +0.4
196,688 + -0.7
196,688 + +0.4
196,689 - +0.0
196,689 - -0.5
196,689 - -0.3
196,732 + -0.3
196,732 + -0.1
196,733 - -0.4
196,733 - +0.4
196,777 - -0.4
196,777 - -1.2
196,912 + +0.3
196,912 + +0.5
196,912 + +0.5
196,912 + +0.3
196,912 + -0.2
196,912 + -0.4
196,913 - -0.2
196,913 - -0.1
196,913 - -0.4
196,917 - -0.3
196,917 - +0.3
196,917 - +1.9
196,917 - -0.5
196,931 + -0.4
196,932 - -0.3
196,932 - +0.1
196,932 - -0.6
196,996 + EX31_RS05295 0.14 -1.0
196,997 - EX31_RS05295 0.14 -0.2
197,013 - EX31_RS05295 0.16 -0.1
197,024 - EX31_RS05295 0.17 +0.3
197,047 + EX31_RS05295 0.18 +0.5
197,083 - EX31_RS05295 0.21 +0.3
197,179 + EX31_RS05295 0.29 +0.0
197,231 + EX31_RS05295 0.34 -0.3
197,231 + EX31_RS05295 0.34 +0.3
197,231 + EX31_RS05295 0.34 +0.6
197,232 - EX31_RS05295 0.34 -0.5
197,326 - EX31_RS05295 0.41 -0.5
197,475 - EX31_RS05295 0.54 -0.9
197,475 - EX31_RS05295 0.54 +0.5
197,475 - EX31_RS05295 0.54 +0.3
197,529 - EX31_RS05295 0.58 +0.4
197,529 - EX31_RS05295 0.58 -0.5
197,573 + EX31_RS05295 0.62 +0.1
197,617 + EX31_RS05295 0.65 +0.0
197,618 - EX31_RS05295 0.65 -0.5
197,630 + EX31_RS05295 0.66 +0.3
197,631 - EX31_RS05295 0.67 -0.2
197,634 + EX31_RS05295 0.67 -0.1
197,634 + EX31_RS05295 0.67 -0.9
197,634 + EX31_RS05295 0.67 +0.1
197,634 + EX31_RS05295 0.67 -0.5
197,634 + EX31_RS05295 0.67 -0.1
197,634 + EX31_RS05295 0.67 -0.2
197,634 + EX31_RS05295 0.67 +0.1
197,634 + EX31_RS05295 0.67 -0.1
197,634 + EX31_RS05295 0.67 +0.0
197,634 + EX31_RS05295 0.67 +0.7
197,634 + EX31_RS05295 0.67 +0.7
197,634 + EX31_RS05295 0.67 +0.2
197,634 + EX31_RS05295 0.67 -0.1
197,634 + EX31_RS05295 0.67 -0.0
197,634 + EX31_RS05295 0.67 -0.0
197,634 + EX31_RS05295 0.67 -1.1
197,634 + EX31_RS05295 0.67 -0.5
197,634 + EX31_RS05295 0.67 +0.1
197,635 - EX31_RS05295 0.67 +0.5
197,635 - EX31_RS05295 0.67 -0.3
197,635 - EX31_RS05295 0.67 +0.0
197,635 - EX31_RS05295 0.67 -0.3
197,635 - EX31_RS05295 0.67 +0.0
197,635 - EX31_RS05295 0.67 -1.5
197,635 - EX31_RS05295 0.67 -0.9
197,635 - EX31_RS05295 0.67 -0.3
197,635 - EX31_RS05295 0.67 +0.0
197,635 - EX31_RS05295 0.67 -0.4
197,635 - EX31_RS05295 0.67 -0.2
197,635 - EX31_RS05295 0.67 +0.4
197,635 - EX31_RS05295 0.67 -0.1
197,635 - EX31_RS05295 0.67 +0.5
197,635 - EX31_RS05295 0.67 -0.3
197,635 - EX31_RS05295 0.67 -0.3
197,635 - EX31_RS05295 0.67 +0.1
197,635 - EX31_RS05295 0.67 -1.0
197,637 + EX31_RS05295 0.67 -0.6
197,637 + EX31_RS05295 0.67 +0.8
197,638 - EX31_RS05295 0.67 -0.2
197,638 - EX31_RS05295 0.67 -0.4
197,638 - EX31_RS05295 0.67 -1.4

Or see this region's nucleotide sequence