Strain Fitness in Rahnella sp. WP5 around EX31_RS04335

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04330 and EX31_RS04335 overlap by 4 nucleotidesEX31_RS04335 and EX31_RS04340 overlap by 4 nucleotides EX31_RS04330: EX31_RS04330 - DNA-binding protein, at 394,407 to 396,275 _RS04330 EX31_RS04335: EX31_RS04335 - site-specific integrase, at 396,272 to 397,630 _RS04335 EX31_RS04340: EX31_RS04340 - tyrosine-type recombinase/integrase, at 397,627 to 398,832 _RS04340 Position (kb) 396 397 398Strain fitness (log2 ratio) -2 -1 0 1at 395.281 kb on + strand, within EX31_RS04330at 395.380 kb on + strand, within EX31_RS04330at 395.380 kb on + strand, within EX31_RS04330at 395.381 kb on - strand, within EX31_RS04330at 395.381 kb on - strand, within EX31_RS04330at 395.387 kb on + strand, within EX31_RS04330at 395.387 kb on + strand, within EX31_RS04330at 395.429 kb on + strand, within EX31_RS04330at 395.430 kb on - strand, within EX31_RS04330at 395.430 kb on - strand, within EX31_RS04330at 395.457 kb on - strand, within EX31_RS04330at 395.477 kb on + strand, within EX31_RS04330at 395.477 kb on + strand, within EX31_RS04330at 395.477 kb on + strand, within EX31_RS04330at 395.478 kb on - strand, within EX31_RS04330at 395.478 kb on - strand, within EX31_RS04330at 395.481 kb on - strand, within EX31_RS04330at 395.481 kb on - strand, within EX31_RS04330at 395.481 kb on - strand, within EX31_RS04330at 395.481 kb on - strand, within EX31_RS04330at 395.519 kb on - strand, within EX31_RS04330at 395.610 kb on + strand, within EX31_RS04330at 395.611 kb on - strand, within EX31_RS04330at 395.749 kb on + strand, within EX31_RS04330at 395.749 kb on + strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.750 kb on - strand, within EX31_RS04330at 395.862 kb on - strand, within EX31_RS04330at 395.862 kb on - strand, within EX31_RS04330at 395.862 kb on - strand, within EX31_RS04330at 395.863 kb on + strand, within EX31_RS04330at 395.863 kb on + strand, within EX31_RS04330at 395.863 kb on + strand, within EX31_RS04330at 395.864 kb on - strand, within EX31_RS04330at 395.864 kb on - strand, within EX31_RS04330at 395.864 kb on - strand, within EX31_RS04330at 395.864 kb on - strand, within EX31_RS04330at 395.873 kb on + strand, within EX31_RS04330at 395.896 kb on - strand, within EX31_RS04330at 395.896 kb on - strand, within EX31_RS04330at 395.935 kb on + strand, within EX31_RS04330at 395.942 kb on - strand, within EX31_RS04330at 395.942 kb on - strand, within EX31_RS04330at 396.025 kb on - strand, within EX31_RS04330at 396.045 kb on - strand, within EX31_RS04330at 396.078 kb on + strand, within EX31_RS04330at 396.079 kb on - strand, within EX31_RS04330at 396.118 kb on - strandat 396.191 kb on + strandat 396.418 kb on + strand, within EX31_RS04335at 396.568 kb on + strand, within EX31_RS04335at 396.569 kb on - strand, within EX31_RS04335at 396.569 kb on - strand, within EX31_RS04335at 396.570 kb on + strand, within EX31_RS04335at 396.601 kb on + strand, within EX31_RS04335at 396.601 kb on + strand, within EX31_RS04335at 396.602 kb on - strand, within EX31_RS04335at 396.604 kb on - strand, within EX31_RS04335at 396.608 kb on + strand, within EX31_RS04335at 396.609 kb on - strand, within EX31_RS04335at 396.656 kb on - strand, within EX31_RS04335at 396.656 kb on - strand, within EX31_RS04335at 396.691 kb on - strand, within EX31_RS04335at 396.734 kb on + strand, within EX31_RS04335at 396.895 kb on - strand, within EX31_RS04335at 396.953 kb on - strand, within EX31_RS04335at 396.966 kb on + strand, within EX31_RS04335at 397.135 kb on + strand, within EX31_RS04335at 397.135 kb on + strand, within EX31_RS04335at 397.136 kb on - strand, within EX31_RS04335at 397.419 kb on - strand, within EX31_RS04335at 397.597 kb on - strandat 397.597 kb on - strandat 397.632 kb on + strandat 397.688 kb on - strandat 397.843 kb on - strand, within EX31_RS04340at 397.886 kb on - strand, within EX31_RS04340at 398.002 kb on + strand, within EX31_RS04340at 398.008 kb on - strand, within EX31_RS04340at 398.051 kb on - strand, within EX31_RS04340at 398.133 kb on + strand, within EX31_RS04340at 398.219 kb on - strand, within EX31_RS04340at 398.320 kb on - strand, within EX31_RS04340at 398.344 kb on - strand, within EX31_RS04340at 398.422 kb on + strand, within EX31_RS04340at 398.466 kb on + strand, within EX31_RS04340at 398.558 kb on + strand, within EX31_RS04340

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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395,281 + EX31_RS04330 0.47 +0.4
395,380 + EX31_RS04330 0.52 -0.6
395,380 + EX31_RS04330 0.52 +1.4
395,381 - EX31_RS04330 0.52 +0.7
395,381 - EX31_RS04330 0.52 -1.6
395,387 + EX31_RS04330 0.52 -0.3
395,387 + EX31_RS04330 0.52 -1.1
395,429 + EX31_RS04330 0.55 -0.9
395,430 - EX31_RS04330 0.55 +1.3
395,430 - EX31_RS04330 0.55 -0.4
395,457 - EX31_RS04330 0.56 -0.6
395,477 + EX31_RS04330 0.57 -2.1
395,477 + EX31_RS04330 0.57 -0.1
395,477 + EX31_RS04330 0.57 -0.0
395,478 - EX31_RS04330 0.57 +0.2
395,478 - EX31_RS04330 0.57 +0.5
395,481 - EX31_RS04330 0.57 +0.5
395,481 - EX31_RS04330 0.57 +0.1
395,481 - EX31_RS04330 0.57 -0.4
395,481 - EX31_RS04330 0.57 +0.7
395,519 - EX31_RS04330 0.59 -0.6
395,610 + EX31_RS04330 0.64 -0.6
395,611 - EX31_RS04330 0.64 +0.1
395,749 + EX31_RS04330 0.72 -2.4
395,749 + EX31_RS04330 0.72 +0.0
395,750 - EX31_RS04330 0.72 +0.2
395,750 - EX31_RS04330 0.72 -0.3
395,750 - EX31_RS04330 0.72 +0.2
395,750 - EX31_RS04330 0.72 -1.3
395,750 - EX31_RS04330 0.72 -0.3
395,750 - EX31_RS04330 0.72 -0.4
395,750 - EX31_RS04330 0.72 -0.1
395,750 - EX31_RS04330 0.72 -0.3
395,862 - EX31_RS04330 0.78 +0.2
395,862 - EX31_RS04330 0.78 -0.2
395,862 - EX31_RS04330 0.78 +0.9
395,863 + EX31_RS04330 0.78 +0.4
395,863 + EX31_RS04330 0.78 -0.0
395,863 + EX31_RS04330 0.78 -0.2
395,864 - EX31_RS04330 0.78 -0.5
395,864 - EX31_RS04330 0.78 -0.7
395,864 - EX31_RS04330 0.78 +0.3
395,864 - EX31_RS04330 0.78 -0.5
395,873 + EX31_RS04330 0.78 -0.3
395,896 - EX31_RS04330 0.80 -0.2
395,896 - EX31_RS04330 0.80 +0.6
395,935 + EX31_RS04330 0.82 -0.2
395,942 - EX31_RS04330 0.82 -1.0
395,942 - EX31_RS04330 0.82 +0.6
396,025 - EX31_RS04330 0.87 -0.6
396,045 - EX31_RS04330 0.88 -0.7
396,078 + EX31_RS04330 0.89 +0.6
396,079 - EX31_RS04330 0.89 +0.3
396,118 - -0.2
396,191 + -1.8
396,418 + EX31_RS04335 0.11 -0.8
396,568 + EX31_RS04335 0.22 +0.5
396,569 - EX31_RS04335 0.22 +0.1
396,569 - EX31_RS04335 0.22 -0.5
396,570 + EX31_RS04335 0.22 -1.1
396,601 + EX31_RS04335 0.24 -1.1
396,601 + EX31_RS04335 0.24 -0.1
396,602 - EX31_RS04335 0.24 -1.4
396,604 - EX31_RS04335 0.24 -1.8
396,608 + EX31_RS04335 0.25 -0.2
396,609 - EX31_RS04335 0.25 -1.3
396,656 - EX31_RS04335 0.28 +0.4
396,656 - EX31_RS04335 0.28 -0.2
396,691 - EX31_RS04335 0.31 -0.8
396,734 + EX31_RS04335 0.34 -0.4
396,895 - EX31_RS04335 0.46 -1.0
396,953 - EX31_RS04335 0.50 -2.0
396,966 + EX31_RS04335 0.51 -0.7
397,135 + EX31_RS04335 0.64 -1.5
397,135 + EX31_RS04335 0.64 -0.2
397,136 - EX31_RS04335 0.64 +0.0
397,419 - EX31_RS04335 0.84 -0.4
397,597 - -0.7
397,597 - -0.1
397,632 + -0.2
397,688 - +0.8
397,843 - EX31_RS04340 0.18 -0.1
397,886 - EX31_RS04340 0.21 +0.1
398,002 + EX31_RS04340 0.31 -0.7
398,008 - EX31_RS04340 0.32 +0.5
398,051 - EX31_RS04340 0.35 -2.2
398,133 + EX31_RS04340 0.42 -0.8
398,219 - EX31_RS04340 0.49 -0.8
398,320 - EX31_RS04340 0.57 +0.0
398,344 - EX31_RS04340 0.59 -0.4
398,422 + EX31_RS04340 0.66 -0.2
398,466 + EX31_RS04340 0.70 -1.9
398,558 + EX31_RS04340 0.77 -1.0

Or see this region's nucleotide sequence