Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS00745 and EX31_RS00755 are separated by 639 nucleotides EX31_RS00755 and EX31_RS00760 are separated by 66 nucleotides EX31_RS00760 and EX31_RS00765 are separated by 4 nucleotides
EX31_RS00745: EX31_RS00745 - malto-oligosyltrehalose trehalohydrolase, at 161,819 to 163,606
_RS00745
EX31_RS00755: EX31_RS00755 - ABC transporter substrate-binding protein, at 164,246 to 165,352
_RS00755
EX31_RS00760: EX31_RS00760 - glutathione S-transferase, at 165,419 to 166,021
_RS00760
EX31_RS00765: EX31_RS00765 - alpha/beta hydrolase, at 166,026 to 166,787
_RS00765
Position (kb) 164
165
166 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 163.314 kb on + strand, within EX31_RS00745 at 163.409 kb on - strand, within EX31_RS00745 at 163.409 kb on - strand, within EX31_RS00745 at 163.409 kb on - strand, within EX31_RS00745 at 163.410 kb on + strand, within EX31_RS00745 at 163.411 kb on - strand, within EX31_RS00745 at 163.411 kb on - strand, within EX31_RS00745 at 163.411 kb on - strand, within EX31_RS00745 at 163.612 kb on + strand at 163.625 kb on - strand at 163.659 kb on - strand at 163.702 kb on + strand at 163.702 kb on + strand at 163.703 kb on - strand at 163.703 kb on - strand at 163.703 kb on - strand at 163.858 kb on + strand at 163.861 kb on - strand at 163.872 kb on - strand at 163.904 kb on - strand at 163.908 kb on - strand at 163.924 kb on + strand at 163.925 kb on - strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.944 kb on + strand at 163.945 kb on - strand at 163.945 kb on - strand at 163.945 kb on - strand at 163.948 kb on + strand at 163.948 kb on + strand at 163.975 kb on - strand at 163.975 kb on - strand at 163.976 kb on + strand at 163.976 kb on + strand at 163.976 kb on + strand at 163.976 kb on + strand at 163.977 kb on - strand at 163.977 kb on - strand at 163.977 kb on - strand at 163.977 kb on - strand at 164.009 kb on + strand at 164.009 kb on + strand at 164.010 kb on - strand at 164.010 kb on - strand at 164.085 kb on - strand at 164.085 kb on - strand at 164.106 kb on + strand at 164.107 kb on - strand at 164.107 kb on - strand at 164.107 kb on - strand at 164.138 kb on + strand at 164.158 kb on + strand at 164.167 kb on + strand at 164.168 kb on - strand at 164.168 kb on - strand at 164.234 kb on + strand at 164.254 kb on - strand at 164.254 kb on - strand at 164.272 kb on + strand at 164.290 kb on - strand at 164.341 kb on + strand at 164.353 kb on - strand at 164.399 kb on + strand, within EX31_RS00755 at 164.399 kb on + strand, within EX31_RS00755 at 164.400 kb on - strand, within EX31_RS00755 at 164.401 kb on + strand, within EX31_RS00755 at 164.401 kb on + strand, within EX31_RS00755 at 164.402 kb on - strand, within EX31_RS00755 at 164.434 kb on + strand, within EX31_RS00755 at 164.434 kb on + strand, within EX31_RS00755 at 164.443 kb on + strand, within EX31_RS00755 at 164.488 kb on + strand, within EX31_RS00755 at 164.488 kb on + strand, within EX31_RS00755 at 164.488 kb on + strand, within EX31_RS00755 at 164.489 kb on - strand, within EX31_RS00755 at 164.489 kb on - strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.492 kb on + strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.493 kb on - strand, within EX31_RS00755 at 164.495 kb on - strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.497 kb on + strand, within EX31_RS00755 at 164.498 kb on - strand, within EX31_RS00755 at 164.498 kb on - strand, within EX31_RS00755 at 164.615 kb on + strand, within EX31_RS00755 at 164.630 kb on + strand, within EX31_RS00755 at 164.659 kb on + strand, within EX31_RS00755 at 164.681 kb on + strand, within EX31_RS00755 at 164.681 kb on + strand, within EX31_RS00755 at 164.681 kb on + strand, within EX31_RS00755 at 164.682 kb on - strand, within EX31_RS00755 at 164.682 kb on - strand, within EX31_RS00755 at 164.725 kb on + strand, within EX31_RS00755 at 164.733 kb on + strand, within EX31_RS00755 at 164.736 kb on + strand, within EX31_RS00755 at 164.845 kb on + strand, within EX31_RS00755 at 164.884 kb on + strand, within EX31_RS00755 at 164.884 kb on + strand, within EX31_RS00755 at 164.888 kb on + strand, within EX31_RS00755 at 164.888 kb on + strand, within EX31_RS00755 at 164.888 kb on + strand, within EX31_RS00755 at 164.889 kb on - strand, within EX31_RS00755 at 165.037 kb on + strand, within EX31_RS00755 at 165.037 kb on + strand, within EX31_RS00755 at 165.038 kb on - strand, within EX31_RS00755 at 165.171 kb on - strand, within EX31_RS00755 at 165.281 kb on + strand at 165.281 kb on + strand at 165.282 kb on - strand at 165.416 kb on + strand at 165.416 kb on + strand at 165.416 kb on + strand at 165.417 kb on - strand at 165.417 kb on - strand at 165.417 kb on - strand at 165.420 kb on + strand at 165.420 kb on + strand at 165.420 kb on + strand at 165.421 kb on - strand at 165.508 kb on + strand, within EX31_RS00760 at 165.509 kb on - strand, within EX31_RS00760 at 165.529 kb on + strand, within EX31_RS00760 at 165.573 kb on - strand, within EX31_RS00760 at 165.575 kb on - strand, within EX31_RS00760 at 165.746 kb on + strand, within EX31_RS00760 at 165.746 kb on + strand, within EX31_RS00760 at 165.747 kb on - strand, within EX31_RS00760 at 165.817 kb on - strand, within EX31_RS00760 at 165.845 kb on + strand, within EX31_RS00760 at 165.865 kb on + strand, within EX31_RS00760 at 165.974 kb on - strand at 166.022 kb on - strand at 166.022 kb on - strand at 166.022 kb on - strand at 166.022 kb on - strand at 166.028 kb on - strand at 166.117 kb on + strand, within EX31_RS00765 at 166.117 kb on + strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.118 kb on - strand, within EX31_RS00765 at 166.121 kb on + strand, within EX31_RS00765 at 166.121 kb on + strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.122 kb on - strand, within EX31_RS00765 at 166.256 kb on - strand, within EX31_RS00765 at 166.256 kb on - strand, within EX31_RS00765 at 166.266 kb on - strand, within EX31_RS00765 at 166.267 kb on + strand, within EX31_RS00765 at 166.267 kb on + strand, within EX31_RS00765 at 166.268 kb on - strand, within EX31_RS00765 at 166.288 kb on + strand, within EX31_RS00765 at 166.331 kb on - strand, within EX31_RS00765
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 163,314 + EX31_RS00745 0.84 -0.0 163,409 - EX31_RS00745 0.89 -0.5 163,409 - EX31_RS00745 0.89 +0.3 163,409 - EX31_RS00745 0.89 -0.1 163,410 + EX31_RS00745 0.89 -0.4 163,411 - EX31_RS00745 0.89 -0.7 163,411 - EX31_RS00745 0.89 -0.0 163,411 - EX31_RS00745 0.89 +0.1 163,612 + +0.2 163,625 - +0.3 163,659 - +0.6 163,702 + -0.7 163,702 + -1.1 163,703 - -1.0 163,703 - -0.2 163,703 - +0.2 163,858 + -0.2 163,861 - -0.5 163,872 - +0.3 163,904 - -0.6 163,908 - +0.3 163,924 + +1.8 163,925 - +0.7 163,944 + -0.4 163,944 + -1.4 163,944 + -1.1 163,944 + -1.5 163,944 + +0.2 163,945 - +0.5 163,945 - -1.0 163,945 - +0.6 163,948 + -1.0 163,948 + -0.5 163,975 - -0.4 163,975 - -1.0 163,976 + -0.0 163,976 + -0.9 163,976 + -0.0 163,976 + -0.4 163,977 - -0.4 163,977 - -0.3 163,977 - -0.3 163,977 - -0.6 164,009 + +0.5 164,009 + -3.2 164,010 - -0.6 164,010 - +0.8 164,085 - -0.6 164,085 - +1.3 164,106 + +0.8 164,107 - +2.5 164,107 - -0.7 164,107 - -0.2 164,138 + +1.6 164,158 + +1.1 164,167 + +0.2 164,168 - -0.9 164,168 - +0.5 164,234 + +1.0 164,254 - -0.4 164,254 - -0.4 164,272 + -0.2 164,290 - -0.9 164,341 + +0.3 164,353 - -1.1 164,399 + EX31_RS00755 0.14 +0.7 164,399 + EX31_RS00755 0.14 -0.5 164,400 - EX31_RS00755 0.14 -0.6 164,401 + EX31_RS00755 0.14 +0.0 164,401 + EX31_RS00755 0.14 +0.6 164,402 - EX31_RS00755 0.14 +0.5 164,434 + EX31_RS00755 0.17 +0.2 164,434 + EX31_RS00755 0.17 -0.6 164,443 + EX31_RS00755 0.18 -1.6 164,488 + EX31_RS00755 0.22 +0.5 164,488 + EX31_RS00755 0.22 +0.3 164,488 + EX31_RS00755 0.22 +0.8 164,489 - EX31_RS00755 0.22 -1.5 164,489 - EX31_RS00755 0.22 +1.0 164,492 + EX31_RS00755 0.22 +0.7 164,492 + EX31_RS00755 0.22 -0.8 164,492 + EX31_RS00755 0.22 -0.4 164,492 + EX31_RS00755 0.22 +0.3 164,492 + EX31_RS00755 0.22 -0.0 164,492 + EX31_RS00755 0.22 +0.2 164,492 + EX31_RS00755 0.22 +1.4 164,492 + EX31_RS00755 0.22 +0.3 164,492 + EX31_RS00755 0.22 -1.9 164,492 + EX31_RS00755 0.22 -0.9 164,493 - EX31_RS00755 0.22 -1.5 164,493 - EX31_RS00755 0.22 -1.8 164,493 - EX31_RS00755 0.22 -0.2 164,493 - EX31_RS00755 0.22 +0.9 164,493 - EX31_RS00755 0.22 -0.0 164,493 - EX31_RS00755 0.22 +0.5 164,493 - EX31_RS00755 0.22 -0.1 164,493 - EX31_RS00755 0.22 +0.6 164,493 - EX31_RS00755 0.22 +1.0 164,495 - EX31_RS00755 0.22 -1.4 164,497 + EX31_RS00755 0.23 +0.2 164,497 + EX31_RS00755 0.23 -1.9 164,497 + EX31_RS00755 0.23 +1.1 164,497 + EX31_RS00755 0.23 -2.4 164,497 + EX31_RS00755 0.23 -0.8 164,497 + EX31_RS00755 0.23 +0.7 164,497 + EX31_RS00755 0.23 -0.4 164,497 + EX31_RS00755 0.23 -0.5 164,497 + EX31_RS00755 0.23 -2.4 164,498 - EX31_RS00755 0.23 -0.0 164,498 - EX31_RS00755 0.23 -0.9 164,615 + EX31_RS00755 0.33 +0.5 164,630 + EX31_RS00755 0.35 +0.3 164,659 + EX31_RS00755 0.37 -0.2 164,681 + EX31_RS00755 0.39 -0.3 164,681 + EX31_RS00755 0.39 -0.1 164,681 + EX31_RS00755 0.39 -0.5 164,682 - EX31_RS00755 0.39 -2.7 164,682 - EX31_RS00755 0.39 -0.0 164,725 + EX31_RS00755 0.43 +0.2 164,733 + EX31_RS00755 0.44 -0.2 164,736 + EX31_RS00755 0.44 -0.5 164,845 + EX31_RS00755 0.54 -0.4 164,884 + EX31_RS00755 0.58 +0.1 164,884 + EX31_RS00755 0.58 -0.6 164,888 + EX31_RS00755 0.58 +1.0 164,888 + EX31_RS00755 0.58 +1.6 164,888 + EX31_RS00755 0.58 -0.1 164,889 - EX31_RS00755 0.58 -0.5 165,037 + EX31_RS00755 0.71 +0.2 165,037 + EX31_RS00755 0.71 -0.0 165,038 - EX31_RS00755 0.72 -0.3 165,171 - EX31_RS00755 0.84 -0.8 165,281 + -1.0 165,281 + -0.4 165,282 - +0.8 165,416 + -0.7 165,416 + +0.3 165,416 + +1.2 165,417 - +0.9 165,417 - -0.1 165,417 - +1.0 165,420 + -0.8 165,420 + +0.6 165,420 + +0.1 165,421 - +0.2 165,508 + EX31_RS00760 0.15 +1.2 165,509 - EX31_RS00760 0.15 -1.3 165,529 + EX31_RS00760 0.18 +0.1 165,573 - EX31_RS00760 0.26 -0.6 165,575 - EX31_RS00760 0.26 -2.8 165,746 + EX31_RS00760 0.54 -0.3 165,746 + EX31_RS00760 0.54 -0.1 165,747 - EX31_RS00760 0.54 +0.2 165,817 - EX31_RS00760 0.66 -0.1 165,845 + EX31_RS00760 0.71 +0.2 165,865 + EX31_RS00760 0.74 -0.4 165,974 - -0.6 166,022 - -1.7 166,022 - -0.7 166,022 - -1.4 166,022 - +0.3 166,028 - +0.9 166,117 + EX31_RS00765 0.12 -1.5 166,117 + EX31_RS00765 0.12 -0.5 166,118 - EX31_RS00765 0.12 -0.1 166,118 - EX31_RS00765 0.12 -1.0 166,118 - EX31_RS00765 0.12 +0.3 166,118 - EX31_RS00765 0.12 +0.7 166,118 - EX31_RS00765 0.12 +0.1 166,118 - EX31_RS00765 0.12 +0.1 166,118 - EX31_RS00765 0.12 -0.1 166,118 - EX31_RS00765 0.12 +0.2 166,118 - EX31_RS00765 0.12 +0.3 166,118 - EX31_RS00765 0.12 +0.1 166,118 - EX31_RS00765 0.12 -2.3 166,121 + EX31_RS00765 0.12 -0.8 166,121 + EX31_RS00765 0.12 +0.4 166,122 - EX31_RS00765 0.13 +1.0 166,122 - EX31_RS00765 0.13 +0.5 166,122 - EX31_RS00765 0.13 +0.4 166,122 - EX31_RS00765 0.13 +1.6 166,122 - EX31_RS00765 0.13 +0.3 166,122 - EX31_RS00765 0.13 +0.4 166,122 - EX31_RS00765 0.13 +0.1 166,122 - EX31_RS00765 0.13 -0.2 166,122 - EX31_RS00765 0.13 -0.2 166,256 - EX31_RS00765 0.30 +1.0 166,256 - EX31_RS00765 0.30 +0.3 166,266 - EX31_RS00765 0.31 -0.4 166,267 + EX31_RS00765 0.32 +0.1 166,267 + EX31_RS00765 0.32 -1.0 166,268 - EX31_RS00765 0.32 +0.1 166,288 + EX31_RS00765 0.34 -0.9 166,331 - EX31_RS00765 0.40 -1.0
Or see this region's nucleotide sequence