Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24820 and EX31_RS25695 are separated by 364 nucleotides EX31_RS25695 and EX31_RS24825 are separated by 516 nucleotides
EX31_RS24820: EX31_RS24820 - amidohydrolase, at 736,025 to 737,203
_RS24820
EX31_RS25695: EX31_RS25695 - DUF1883 domain-containing protein, at 737,568 to 737,825
_RS25695
EX31_RS24825: EX31_RS24825 - WG repeat-containing protein, at 738,342 to 741,104
_RS24825
Position (kb) 737
738 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 736.571 kb on + strand, within EX31_RS24820 at 736.572 kb on - strand, within EX31_RS24820 at 736.579 kb on + strand, within EX31_RS24820 at 736.579 kb on + strand, within EX31_RS24820 at 736.615 kb on + strand, within EX31_RS24820 at 736.696 kb on + strand, within EX31_RS24820 at 736.697 kb on - strand, within EX31_RS24820 at 736.697 kb on - strand, within EX31_RS24820 at 736.771 kb on + strand, within EX31_RS24820 at 736.772 kb on - strand, within EX31_RS24820 at 736.801 kb on + strand, within EX31_RS24820 at 736.802 kb on - strand, within EX31_RS24820 at 736.870 kb on + strand, within EX31_RS24820 at 736.921 kb on - strand, within EX31_RS24820 at 736.960 kb on + strand, within EX31_RS24820 at 736.961 kb on - strand, within EX31_RS24820 at 736.961 kb on - strand, within EX31_RS24820 at 737.050 kb on - strand, within EX31_RS24820 at 737.054 kb on + strand, within EX31_RS24820 at 737.054 kb on + strand, within EX31_RS24820 at 737.055 kb on - strand, within EX31_RS24820 at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.194 kb on + strand at 737.195 kb on - strand at 737.195 kb on - strand at 737.204 kb on + strand at 737.206 kb on + strand at 737.206 kb on + strand at 737.207 kb on - strand at 737.244 kb on - strand at 737.263 kb on + strand at 737.306 kb on + strand at 737.366 kb on + strand at 737.367 kb on - strand at 737.491 kb on + strand at 737.556 kb on + strand at 737.557 kb on - strand at 737.557 kb on - strand at 737.579 kb on + strand at 737.579 kb on + strand at 737.579 kb on + strand at 737.579 kb on + strand at 737.580 kb on - strand at 737.580 kb on - strand at 737.580 kb on - strand at 737.581 kb on + strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.582 kb on - strand at 737.586 kb on + strand at 737.586 kb on + strand at 737.586 kb on + strand at 737.587 kb on - strand at 737.642 kb on + strand, within EX31_RS25695 at 737.643 kb on - strand, within EX31_RS25695 at 737.644 kb on + strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.645 kb on - strand, within EX31_RS25695 at 737.659 kb on + strand, within EX31_RS25695 at 737.659 kb on + strand, within EX31_RS25695 at 737.660 kb on - strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.772 kb on + strand, within EX31_RS25695 at 737.773 kb on - strand, within EX31_RS25695 at 737.773 kb on - strand, within EX31_RS25695 at 737.838 kb on + strand at 737.839 kb on - strand at 737.844 kb on - strand at 737.844 kb on - strand at 737.844 kb on - strand at 737.857 kb on + strand at 737.857 kb on + strand at 737.857 kb on + strand at 737.857 kb on + strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.858 kb on - strand at 737.864 kb on + strand at 737.934 kb on + strand at 737.936 kb on + strand at 737.962 kb on - strand at 737.983 kb on + strand at 737.983 kb on + strand at 737.983 kb on + strand at 737.984 kb on - strand at 737.987 kb on - strand at 738.001 kb on + strand at 738.002 kb on - strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.026 kb on + strand at 738.027 kb on - strand at 738.027 kb on - strand at 738.041 kb on + strand at 738.041 kb on + strand at 738.042 kb on - strand at 738.042 kb on - strand at 738.049 kb on - strand at 738.051 kb on + strand at 738.093 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.144 kb on + strand at 738.145 kb on - strand at 738.145 kb on - strand at 738.145 kb on - strand at 738.148 kb on + strand at 738.149 kb on - strand at 738.149 kb on - strand at 738.149 kb on - strand at 738.166 kb on + strand at 738.169 kb on + strand at 738.169 kb on + strand at 738.174 kb on + strand at 738.175 kb on - strand at 738.205 kb on + strand at 738.205 kb on + strand at 738.207 kb on + strand at 738.242 kb on + strand at 738.328 kb on + strand at 738.329 kb on - strand at 738.330 kb on + strand at 738.331 kb on - strand at 738.455 kb on + strand at 738.456 kb on - strand at 738.456 kb on - strand at 738.549 kb on + strand at 738.569 kb on + strand at 738.569 kb on + strand at 738.569 kb on + strand at 738.569 kb on + strand at 738.569 kb on + strand at 738.570 kb on - strand at 738.651 kb on + strand, within EX31_RS24825 at 738.651 kb on + strand, within EX31_RS24825 at 738.651 kb on + strand, within EX31_RS24825 at 738.651 kb on + strand, within EX31_RS24825 at 738.653 kb on + strand, within EX31_RS24825 at 738.653 kb on + strand, within EX31_RS24825 at 738.654 kb on - strand, within EX31_RS24825 at 738.686 kb on + strand, within EX31_RS24825 at 738.687 kb on - strand, within EX31_RS24825 at 738.754 kb on + strand, within EX31_RS24825
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 736,571 + EX31_RS24820 0.46 +0.5 736,572 - EX31_RS24820 0.46 -0.3 736,579 + EX31_RS24820 0.47 -0.4 736,579 + EX31_RS24820 0.47 +0.2 736,615 + EX31_RS24820 0.50 -0.1 736,696 + EX31_RS24820 0.57 -1.3 736,697 - EX31_RS24820 0.57 +0.4 736,697 - EX31_RS24820 0.57 +0.1 736,771 + EX31_RS24820 0.63 -0.2 736,772 - EX31_RS24820 0.63 +0.2 736,801 + EX31_RS24820 0.66 -0.1 736,802 - EX31_RS24820 0.66 -0.1 736,870 + EX31_RS24820 0.72 +0.1 736,921 - EX31_RS24820 0.76 +0.2 736,960 + EX31_RS24820 0.79 -1.0 736,961 - EX31_RS24820 0.79 +0.3 736,961 - EX31_RS24820 0.79 +0.4 737,050 - EX31_RS24820 0.87 +0.0 737,054 + EX31_RS24820 0.87 -0.3 737,054 + EX31_RS24820 0.87 -0.5 737,055 - EX31_RS24820 0.87 -1.0 737,194 + +0.0 737,194 + +0.5 737,194 + +0.3 737,194 + -0.1 737,194 + +0.8 737,194 + -0.5 737,195 - -1.4 737,195 - -0.5 737,204 + -0.3 737,206 + -0.0 737,206 + -0.0 737,207 - -0.8 737,244 - -2.4 737,263 + +0.1 737,306 + +0.4 737,366 + -1.3 737,367 - +0.7 737,491 + -2.2 737,556 + -0.5 737,557 - -0.8 737,557 - -2.1 737,579 + -3.0 737,579 + -1.9 737,579 + -1.8 737,579 + -1.0 737,580 - +0.4 737,580 - -1.1 737,580 - -0.8 737,581 + -1.0 737,582 - -0.1 737,582 - -0.0 737,582 - -1.4 737,582 - +0.9 737,582 - +0.3 737,582 - -0.7 737,586 + -1.8 737,586 + +0.2 737,586 + -2.3 737,587 - +0.5 737,642 + EX31_RS25695 0.29 -0.9 737,643 - EX31_RS25695 0.29 -0.3 737,644 + EX31_RS25695 0.29 -1.2 737,645 - EX31_RS25695 0.30 -0.5 737,645 - EX31_RS25695 0.30 -0.5 737,645 - EX31_RS25695 0.30 -0.3 737,645 - EX31_RS25695 0.30 +0.4 737,645 - EX31_RS25695 0.30 +0.5 737,659 + EX31_RS25695 0.35 +0.7 737,659 + EX31_RS25695 0.35 -0.7 737,660 - EX31_RS25695 0.36 -0.6 737,772 + EX31_RS25695 0.79 -1.2 737,772 + EX31_RS25695 0.79 -0.3 737,772 + EX31_RS25695 0.79 -2.2 737,772 + EX31_RS25695 0.79 -0.7 737,772 + EX31_RS25695 0.79 -0.7 737,772 + EX31_RS25695 0.79 -0.8 737,772 + EX31_RS25695 0.79 -0.3 737,772 + EX31_RS25695 0.79 -0.6 737,773 - EX31_RS25695 0.79 +0.7 737,773 - EX31_RS25695 0.79 -0.3 737,838 + -0.6 737,839 - -0.4 737,844 - +0.3 737,844 - +0.0 737,844 - +0.3 737,857 + +1.2 737,857 + +0.9 737,857 + -0.8 737,857 + -0.5 737,858 - +0.4 737,858 - +1.0 737,858 - -0.2 737,858 - +0.5 737,858 - +1.1 737,864 + +0.5 737,934 + +0.3 737,936 + -0.2 737,962 - -0.7 737,983 + -0.6 737,983 + -0.8 737,983 + +0.5 737,984 - -0.2 737,987 - -0.3 738,001 + -0.8 738,002 - +1.3 738,026 + +0.4 738,026 + +0.1 738,026 + -0.1 738,026 + -0.7 738,026 + +0.0 738,026 + +0.7 738,027 - -1.2 738,027 - +0.8 738,041 + -0.4 738,041 + +0.6 738,042 - -0.5 738,042 - -0.2 738,049 - -0.2 738,051 + +0.3 738,093 + -0.6 738,144 + +0.7 738,144 + +0.1 738,144 + +0.7 738,144 + -0.3 738,144 + -1.5 738,145 - -0.1 738,145 - -1.1 738,145 - -0.6 738,148 + -1.0 738,149 - -0.7 738,149 - -0.5 738,149 - -1.4 738,166 + +0.2 738,169 + +0.9 738,169 + +0.8 738,174 + -0.3 738,175 - -0.8 738,205 + +0.4 738,205 + -0.5 738,207 + +0.2 738,242 + -0.2 738,328 + +0.1 738,329 - +0.5 738,330 + -0.7 738,331 - +0.2 738,455 + +0.4 738,456 - +1.9 738,456 - -1.2 738,549 + -1.2 738,569 + +0.2 738,569 + -0.3 738,569 + -0.8 738,569 + -0.2 738,569 + -0.9 738,570 - -0.2 738,651 + EX31_RS24825 0.11 -0.7 738,651 + EX31_RS24825 0.11 -1.1 738,651 + EX31_RS24825 0.11 -0.2 738,651 + EX31_RS24825 0.11 -0.7 738,653 + EX31_RS24825 0.11 +0.6 738,653 + EX31_RS24825 0.11 +0.6 738,654 - EX31_RS24825 0.11 +0.3 738,686 + EX31_RS24825 0.12 +0.6 738,687 - EX31_RS24825 0.12 +0.3 738,754 + EX31_RS24825 0.15 -0.1
Or see this region's nucleotide sequence