Strain Fitness in Rahnella sp. WP5 around EX31_RS25025

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00320 and EX31_RS00325 are separated by 66 nucleotidesEX31_RS00325 and EX31_RS25025 are separated by 198 nucleotidesEX31_RS25025 and EX31_RS00330 are separated by 212 nucleotidesEX31_RS00330 and EX31_RS00335 are separated by 97 nucleotides EX31_RS00320: EX31_RS00320 - HAD-IA family hydrolase, at 67,583 to 68,272 _RS00320 EX31_RS00325: EX31_RS00325 - hypothetical protein, at 68,339 to 68,983 _RS00325 EX31_RS25025: EX31_RS25025 - DUF1272 domain-containing protein, at 69,182 to 69,421 _RS25025 EX31_RS00330: EX31_RS00330 - drug:proton antiporter, at 69,634 to 70,005 _RS00330 EX31_RS00335: EX31_RS00335 - YafY family transcriptional regulator, at 70,103 to 70,792 _RS00335 Position (kb) 69 70Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 68.242 kb on + strandat 68.330 kb on + strandat 68.330 kb on + strandat 68.330 kb on + strandat 68.330 kb on + strandat 68.331 kb on - strandat 68.331 kb on - strandat 68.331 kb on - strandat 68.331 kb on - strandat 68.368 kb on - strandat 68.447 kb on - strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.502 kb on + strand, within EX31_RS00325at 68.503 kb on - strand, within EX31_RS00325at 68.503 kb on - strand, within EX31_RS00325at 68.503 kb on - strand, within EX31_RS00325at 68.503 kb on - strand, within EX31_RS00325at 68.503 kb on - strand, within EX31_RS00325at 68.570 kb on - strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.748 kb on + strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.749 kb on - strand, within EX31_RS00325at 68.778 kb on + strand, within EX31_RS00325at 68.779 kb on - strand, within EX31_RS00325at 68.781 kb on + strand, within EX31_RS00325at 68.781 kb on + strand, within EX31_RS00325at 68.782 kb on - strand, within EX31_RS00325at 68.782 kb on - strand, within EX31_RS00325at 68.782 kb on - strand, within EX31_RS00325at 68.782 kb on - strand, within EX31_RS00325at 68.804 kb on - strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.867 kb on + strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.868 kb on - strand, within EX31_RS00325at 68.897 kb on + strand, within EX31_RS00325at 68.898 kb on - strand, within EX31_RS00325at 68.997 kb on - strandat 68.997 kb on - strandat 69.029 kb on + strandat 69.063 kb on + strandat 69.064 kb on - strandat 69.064 kb on - strandat 69.091 kb on + strandat 69.091 kb on + strandat 69.091 kb on + strandat 69.091 kb on + strandat 69.092 kb on - strandat 69.092 kb on - strandat 69.092 kb on - strandat 69.093 kb on + strandat 69.094 kb on - strandat 69.094 kb on - strandat 69.094 kb on - strandat 69.094 kb on - strandat 69.094 kb on - strandat 69.106 kb on - strandat 69.106 kb on - strandat 69.184 kb on - strandat 69.184 kb on - strandat 69.184 kb on - strandat 69.206 kb on - strand, within EX31_RS25025at 69.210 kb on - strand, within EX31_RS25025at 69.210 kb on - strand, within EX31_RS25025at 69.219 kb on - strand, within EX31_RS25025at 69.296 kb on + strand, within EX31_RS25025at 69.421 kb on + strandat 69.421 kb on + strandat 69.421 kb on + strandat 69.421 kb on + strandat 69.442 kb on - strandat 69.489 kb on - strandat 69.489 kb on - strandat 69.494 kb on + strandat 69.495 kb on - strandat 69.654 kb on - strandat 69.697 kb on - strand, within EX31_RS00330at 69.699 kb on - strand, within EX31_RS00330at 69.731 kb on - strand, within EX31_RS00330at 69.731 kb on - strand, within EX31_RS00330at 69.822 kb on - strand, within EX31_RS00330at 69.847 kb on - strand, within EX31_RS00330at 69.847 kb on - strand, within EX31_RS00330at 69.945 kb on - strand, within EX31_RS00330at 69.977 kb on + strandat 69.985 kb on - strandat 69.985 kb on - strandat 69.985 kb on - strandat 70.051 kb on - strandat 70.057 kb on + strandat 70.062 kb on + strandat 70.063 kb on - strandat 70.063 kb on - strandat 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.196 kb on - strand, within EX31_RS00335at 70.253 kb on + strand, within EX31_RS00335at 70.272 kb on + strand, within EX31_RS00335at 70.273 kb on - strand, within EX31_RS00335at 70.345 kb on + strand, within EX31_RS00335at 70.358 kb on - strand, within EX31_RS00335

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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68,242 + -0.2
68,330 + +1.3
68,330 + -0.3
68,330 + +0.3
68,330 + -0.3
68,331 - -1.0
68,331 - -0.2
68,331 - +0.4
68,331 - -0.0
68,368 - -0.7
68,447 - EX31_RS00325 0.17 -0.2
68,502 + EX31_RS00325 0.25 +1.8
68,502 + EX31_RS00325 0.25 -0.6
68,502 + EX31_RS00325 0.25 -0.2
68,502 + EX31_RS00325 0.25 -0.3
68,502 + EX31_RS00325 0.25 -0.1
68,502 + EX31_RS00325 0.25 +1.0
68,502 + EX31_RS00325 0.25 +0.3
68,503 - EX31_RS00325 0.25 -0.1
68,503 - EX31_RS00325 0.25 +0.1
68,503 - EX31_RS00325 0.25 -1.9
68,503 - EX31_RS00325 0.25 -0.6
68,503 - EX31_RS00325 0.25 -0.5
68,570 - EX31_RS00325 0.36 -0.1
68,748 + EX31_RS00325 0.63 -0.1
68,748 + EX31_RS00325 0.63 +1.0
68,748 + EX31_RS00325 0.63 -0.2
68,748 + EX31_RS00325 0.63 -0.2
68,748 + EX31_RS00325 0.63 -0.7
68,748 + EX31_RS00325 0.63 +0.3
68,748 + EX31_RS00325 0.63 +0.4
68,749 - EX31_RS00325 0.64 +0.2
68,749 - EX31_RS00325 0.64 -0.4
68,749 - EX31_RS00325 0.64 +0.5
68,749 - EX31_RS00325 0.64 -0.4
68,749 - EX31_RS00325 0.64 -0.2
68,749 - EX31_RS00325 0.64 -0.2
68,749 - EX31_RS00325 0.64 +0.2
68,749 - EX31_RS00325 0.64 -1.1
68,749 - EX31_RS00325 0.64 +0.1
68,778 + EX31_RS00325 0.68 -0.9
68,779 - EX31_RS00325 0.68 +0.4
68,781 + EX31_RS00325 0.69 -2.5
68,781 + EX31_RS00325 0.69 -0.4
68,782 - EX31_RS00325 0.69 +0.5
68,782 - EX31_RS00325 0.69 +0.2
68,782 - EX31_RS00325 0.69 -0.1
68,782 - EX31_RS00325 0.69 +0.2
68,804 - EX31_RS00325 0.72 +0.4
68,867 + EX31_RS00325 0.82 +0.9
68,867 + EX31_RS00325 0.82 -0.2
68,867 + EX31_RS00325 0.82 -0.2
68,867 + EX31_RS00325 0.82 -2.8
68,867 + EX31_RS00325 0.82 +0.1
68,867 + EX31_RS00325 0.82 +0.9
68,867 + EX31_RS00325 0.82 +0.1
68,867 + EX31_RS00325 0.82 -1.2
68,867 + EX31_RS00325 0.82 -0.4
68,867 + EX31_RS00325 0.82 +1.4
68,868 - EX31_RS00325 0.82 +0.2
68,868 - EX31_RS00325 0.82 -0.4
68,868 - EX31_RS00325 0.82 +1.2
68,868 - EX31_RS00325 0.82 +0.2
68,868 - EX31_RS00325 0.82 -0.3
68,868 - EX31_RS00325 0.82 +0.3
68,868 - EX31_RS00325 0.82 -0.0
68,897 + EX31_RS00325 0.87 -0.9
68,898 - EX31_RS00325 0.87 +0.8
68,997 - -0.1
68,997 - -0.4
69,029 + -0.9
69,063 + -1.1
69,064 - +0.3
69,064 - -0.9
69,091 + -0.1
69,091 + +0.2
69,091 + +1.4
69,091 + -1.4
69,092 - -1.6
69,092 - +0.4
69,092 - -0.3
69,093 + -1.3
69,094 - +0.2
69,094 - -0.2
69,094 - -0.1
69,094 - -0.4
69,094 - -0.8
69,106 - -0.4
69,106 - -0.8
69,184 - -0.6
69,184 - +0.3
69,184 - +0.8
69,206 - EX31_RS25025 0.10 -0.5
69,210 - EX31_RS25025 0.12 -0.2
69,210 - EX31_RS25025 0.12 +0.3
69,219 - EX31_RS25025 0.15 -3.1
69,296 + EX31_RS25025 0.47 -0.4
69,421 + +1.3
69,421 + -1.8
69,421 + +0.8
69,421 + -0.2
69,442 - +0.5
69,489 - +0.1
69,489 - +0.6
69,494 + -0.9
69,495 - +0.2
69,654 - -0.3
69,697 - EX31_RS00330 0.17 +0.4
69,699 - EX31_RS00330 0.17 -0.3
69,731 - EX31_RS00330 0.26 -0.9
69,731 - EX31_RS00330 0.26 -0.1
69,822 - EX31_RS00330 0.51 +0.2
69,847 - EX31_RS00330 0.57 +0.4
69,847 - EX31_RS00330 0.57 +0.3
69,945 - EX31_RS00330 0.84 +0.7
69,977 + +0.5
69,985 - -1.4
69,985 - +0.2
69,985 - -0.1
70,051 - +0.0
70,057 + -1.9
70,062 + -0.8
70,063 - +0.4
70,063 - +0.8
70,196 - EX31_RS00335 0.13 -0.5
70,196 - EX31_RS00335 0.13 -0.9
70,196 - EX31_RS00335 0.13 -0.6
70,196 - EX31_RS00335 0.13 -1.0
70,196 - EX31_RS00335 0.13 +0.0
70,196 - EX31_RS00335 0.13 +0.7
70,196 - EX31_RS00335 0.13 -0.5
70,196 - EX31_RS00335 0.13 -1.0
70,196 - EX31_RS00335 0.13 +0.4
70,196 - EX31_RS00335 0.13 +0.4
70,196 - EX31_RS00335 0.13 +0.9
70,196 - EX31_RS00335 0.13 +0.2
70,196 - EX31_RS00335 0.13 -0.2
70,196 - EX31_RS00335 0.13 +0.5
70,196 - EX31_RS00335 0.13 -0.1
70,253 + EX31_RS00335 0.22 +0.3
70,272 + EX31_RS00335 0.24 -1.1
70,273 - EX31_RS00335 0.25 -0.2
70,345 + EX31_RS00335 0.35 +0.2
70,358 - EX31_RS00335 0.37 -0.4

Or see this region's nucleotide sequence