Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24305 and EX31_RS24310 are separated by 130 nucleotides EX31_RS24310 and EX31_RS24315 are separated by 27 nucleotides
EX31_RS24305: EX31_RS24305 - VOC family protein, at 627,034 to 627,432
_RS24305
EX31_RS24310: EX31_RS24310 - hypothetical protein, at 627,563 to 627,919
_RS24310
EX31_RS24315: EX31_RS24315 - multidrug efflux MFS transporter MdtG, at 627,947 to 629,185
_RS24315
Position (kb) 627
628 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 626.565 kb on + strand at 626.601 kb on + strand at 626.601 kb on + strand at 626.604 kb on + strand at 626.605 kb on - strand at 626.605 kb on - strand at 626.607 kb on + strand at 626.607 kb on + strand at 626.632 kb on - strand at 626.693 kb on + strand at 626.697 kb on + strand at 626.697 kb on + strand at 626.698 kb on - strand at 626.728 kb on + strand at 626.728 kb on + strand at 626.728 kb on + strand at 626.737 kb on + strand at 626.737 kb on + strand at 626.754 kb on + strand at 626.754 kb on + strand at 626.754 kb on + strand at 626.755 kb on - strand at 626.758 kb on + strand at 626.758 kb on + strand at 626.759 kb on - strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.809 kb on + strand at 626.810 kb on - strand at 626.927 kb on + strand at 626.927 kb on + strand at 626.929 kb on + strand at 626.971 kb on + strand at 627.042 kb on - strand at 627.054 kb on - strand at 627.103 kb on + strand, within EX31_RS24305 at 627.104 kb on - strand, within EX31_RS24305 at 627.142 kb on - strand, within EX31_RS24305 at 627.208 kb on - strand, within EX31_RS24305 at 627.268 kb on + strand, within EX31_RS24305 at 627.268 kb on + strand, within EX31_RS24305 at 627.268 kb on + strand, within EX31_RS24305 at 627.269 kb on - strand, within EX31_RS24305 at 627.269 kb on - strand, within EX31_RS24305 at 627.270 kb on + strand, within EX31_RS24305 at 627.345 kb on + strand, within EX31_RS24305 at 627.384 kb on + strand, within EX31_RS24305 at 627.396 kb on + strand at 627.396 kb on + strand at 627.396 kb on + strand at 627.396 kb on + strand at 627.397 kb on - strand at 627.397 kb on - strand at 627.430 kb on + strand at 627.431 kb on - strand at 627.527 kb on - strand at 627.562 kb on + strand at 627.612 kb on + strand, within EX31_RS24310 at 627.615 kb on + strand, within EX31_RS24310 at 627.615 kb on + strand, within EX31_RS24310 at 627.616 kb on - strand, within EX31_RS24310 at 627.647 kb on - strand, within EX31_RS24310 at 627.647 kb on - strand, within EX31_RS24310 at 627.816 kb on + strand, within EX31_RS24310 at 627.846 kb on - strand, within EX31_RS24310 at 627.881 kb on + strand, within EX31_RS24310 at 627.881 kb on + strand, within EX31_RS24310 at 627.881 kb on + strand, within EX31_RS24310 at 627.881 kb on + strand, within EX31_RS24310 at 627.882 kb on - strand, within EX31_RS24310 at 627.882 kb on - strand, within EX31_RS24310 at 627.882 kb on - strand, within EX31_RS24310 at 627.917 kb on + strand at 628.010 kb on + strand at 628.123 kb on - strand, within EX31_RS24315 at 628.123 kb on - strand, within EX31_RS24315 at 628.142 kb on + strand, within EX31_RS24315 at 628.142 kb on + strand, within EX31_RS24315 at 628.160 kb on - strand, within EX31_RS24315 at 628.161 kb on + strand, within EX31_RS24315 at 628.161 kb on + strand, within EX31_RS24315 at 628.161 kb on + strand, within EX31_RS24315 at 628.161 kb on + strand, within EX31_RS24315 at 628.161 kb on + strand, within EX31_RS24315 at 628.162 kb on - strand, within EX31_RS24315 at 628.162 kb on - strand, within EX31_RS24315 at 628.162 kb on - strand, within EX31_RS24315 at 628.250 kb on + strand, within EX31_RS24315 at 628.274 kb on + strand, within EX31_RS24315 at 628.274 kb on + strand, within EX31_RS24315 at 628.283 kb on + strand, within EX31_RS24315 at 628.283 kb on + strand, within EX31_RS24315 at 628.399 kb on + strand, within EX31_RS24315 at 628.418 kb on - strand, within EX31_RS24315 at 628.437 kb on - strand, within EX31_RS24315 at 628.440 kb on + strand, within EX31_RS24315 at 628.441 kb on - strand, within EX31_RS24315 at 628.441 kb on - strand, within EX31_RS24315 at 628.441 kb on - strand, within EX31_RS24315 at 628.441 kb on - strand, within EX31_RS24315 at 628.484 kb on - strand, within EX31_RS24315 at 628.603 kb on - strand, within EX31_RS24315 at 628.603 kb on - strand, within EX31_RS24315 at 628.645 kb on + strand, within EX31_RS24315 at 628.668 kb on + strand, within EX31_RS24315 at 628.668 kb on + strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.669 kb on - strand, within EX31_RS24315 at 628.760 kb on - strand, within EX31_RS24315 at 628.827 kb on - strand, within EX31_RS24315 at 628.875 kb on - strand, within EX31_RS24315 at 628.877 kb on + strand, within EX31_RS24315 at 628.877 kb on + strand, within EX31_RS24315 at 628.877 kb on + strand, within EX31_RS24315 at 628.878 kb on - strand, within EX31_RS24315 at 628.878 kb on - strand, within EX31_RS24315
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 626,565 + +0.8 626,601 + -0.3 626,601 + +0.5 626,604 + +1.4 626,605 - -0.3 626,605 - -0.1 626,607 + -0.4 626,607 + +0.1 626,632 - -0.7 626,693 + +0.4 626,697 + -0.5 626,697 + -0.9 626,698 - +0.4 626,728 + -0.1 626,728 + +0.5 626,728 + -1.0 626,737 + -0.3 626,737 + -0.7 626,754 + -0.4 626,754 + +0.1 626,754 + +0.2 626,755 - +0.6 626,758 + -0.8 626,758 + +0.6 626,759 - -0.5 626,809 + -0.9 626,809 + -0.9 626,809 + -0.5 626,809 + -0.3 626,809 + +0.7 626,809 + -0.5 626,809 + +0.9 626,809 + +1.0 626,809 + +0.0 626,809 + +0.5 626,809 + -0.3 626,809 + -0.5 626,809 + -0.8 626,809 + +0.4 626,809 + -1.3 626,809 + -0.5 626,809 + +0.4 626,809 + +0.3 626,809 + +1.0 626,810 - -0.8 626,927 + +0.7 626,927 + -0.4 626,929 + +0.2 626,971 + +0.4 627,042 - -0.3 627,054 - -1.4 627,103 + EX31_RS24305 0.17 -0.4 627,104 - EX31_RS24305 0.18 -0.6 627,142 - EX31_RS24305 0.27 -1.4 627,208 - EX31_RS24305 0.44 -0.5 627,268 + EX31_RS24305 0.59 +0.1 627,268 + EX31_RS24305 0.59 -0.4 627,268 + EX31_RS24305 0.59 +0.0 627,269 - EX31_RS24305 0.59 -0.3 627,269 - EX31_RS24305 0.59 -0.4 627,270 + EX31_RS24305 0.59 -0.4 627,345 + EX31_RS24305 0.78 -0.5 627,384 + EX31_RS24305 0.88 +0.3 627,396 + +0.1 627,396 + -1.1 627,396 + -0.3 627,396 + -1.1 627,397 - +0.6 627,397 - +0.6 627,430 + -1.3 627,431 - +0.3 627,527 - +0.8 627,562 + -3.2 627,612 + EX31_RS24310 0.14 +0.4 627,615 + EX31_RS24310 0.15 -0.5 627,615 + EX31_RS24310 0.15 -0.7 627,616 - EX31_RS24310 0.15 -1.5 627,647 - EX31_RS24310 0.24 -0.6 627,647 - EX31_RS24310 0.24 -0.2 627,816 + EX31_RS24310 0.71 -0.0 627,846 - EX31_RS24310 0.79 +0.1 627,881 + EX31_RS24310 0.89 -1.2 627,881 + EX31_RS24310 0.89 -0.2 627,881 + EX31_RS24310 0.89 -0.5 627,881 + EX31_RS24310 0.89 +0.1 627,882 - EX31_RS24310 0.89 -2.0 627,882 - EX31_RS24310 0.89 -1.0 627,882 - EX31_RS24310 0.89 +0.0 627,917 + +0.2 628,010 + +0.0 628,123 - EX31_RS24315 0.14 -0.0 628,123 - EX31_RS24315 0.14 -0.2 628,142 + EX31_RS24315 0.16 -0.4 628,142 + EX31_RS24315 0.16 -0.3 628,160 - EX31_RS24315 0.17 -1.0 628,161 + EX31_RS24315 0.17 -0.4 628,161 + EX31_RS24315 0.17 -0.1 628,161 + EX31_RS24315 0.17 -0.0 628,161 + EX31_RS24315 0.17 +1.3 628,161 + EX31_RS24315 0.17 +1.8 628,162 - EX31_RS24315 0.17 +0.3 628,162 - EX31_RS24315 0.17 +0.0 628,162 - EX31_RS24315 0.17 -0.8 628,250 + EX31_RS24315 0.24 -0.3 628,274 + EX31_RS24315 0.26 -1.8 628,274 + EX31_RS24315 0.26 -0.7 628,283 + EX31_RS24315 0.27 -1.3 628,283 + EX31_RS24315 0.27 -1.7 628,399 + EX31_RS24315 0.36 -0.5 628,418 - EX31_RS24315 0.38 -0.3 628,437 - EX31_RS24315 0.40 -1.0 628,440 + EX31_RS24315 0.40 -0.0 628,441 - EX31_RS24315 0.40 -0.6 628,441 - EX31_RS24315 0.40 +2.5 628,441 - EX31_RS24315 0.40 -0.2 628,441 - EX31_RS24315 0.40 -0.1 628,484 - EX31_RS24315 0.43 +0.4 628,603 - EX31_RS24315 0.53 -1.2 628,603 - EX31_RS24315 0.53 -0.9 628,645 + EX31_RS24315 0.56 -0.4 628,668 + EX31_RS24315 0.58 -0.5 628,668 + EX31_RS24315 0.58 -0.5 628,669 - EX31_RS24315 0.58 -0.4 628,669 - EX31_RS24315 0.58 -0.5 628,669 - EX31_RS24315 0.58 -0.1 628,669 - EX31_RS24315 0.58 +0.8 628,669 - EX31_RS24315 0.58 +0.2 628,669 - EX31_RS24315 0.58 -0.1 628,669 - EX31_RS24315 0.58 +0.5 628,760 - EX31_RS24315 0.66 -0.3 628,827 - EX31_RS24315 0.71 +0.3 628,875 - EX31_RS24315 0.75 -0.1 628,877 + EX31_RS24315 0.75 -0.5 628,877 + EX31_RS24315 0.75 -0.9 628,877 + EX31_RS24315 0.75 -0.1 628,878 - EX31_RS24315 0.75 -0.2 628,878 - EX31_RS24315 0.75 -0.1
Or see this region's nucleotide sequence