Strain Fitness in Rahnella sp. WP5 around EX31_RS23975

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23965 and EX31_RS23970 overlap by 1 nucleotidesEX31_RS23970 and EX31_RS23975 overlap by 4 nucleotidesEX31_RS23975 and EX31_RS23980 are separated by 2 nucleotidesEX31_RS23980 and EX31_RS23985 overlap by 4 nucleotides EX31_RS23965: EX31_RS23965 - hypothetical protein, at 562,021 to 562,548 _RS23965 EX31_RS23970: EX31_RS23970 - DUF2878 domain-containing protein, at 562,548 to 563,048 _RS23970 EX31_RS23975: EX31_RS23975 - class I SAM-dependent methyltransferase, at 563,045 to 564,277 _RS23975 EX31_RS23980: EX31_RS23980 - DUF1365 domain-containing protein, at 564,280 to 564,996 _RS23980 EX31_RS23985: EX31_RS23985 - FAD-dependent oxidoreductase, at 564,993 to 566,351 _RS23985 Position (kb) 563 564 565Strain fitness (log2 ratio) -2 -1 0 1 2at 562.057 kb on + strandat 562.058 kb on - strandat 562.067 kb on + strandat 562.286 kb on - strand, within EX31_RS23965at 562.352 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.391 kb on + strand, within EX31_RS23965at 562.395 kb on + strand, within EX31_RS23965at 562.395 kb on + strand, within EX31_RS23965at 562.424 kb on + strand, within EX31_RS23965at 562.642 kb on + strand, within EX31_RS23970at 562.643 kb on - strand, within EX31_RS23970at 562.690 kb on + strand, within EX31_RS23970at 562.693 kb on + strand, within EX31_RS23970at 562.694 kb on - strand, within EX31_RS23970at 562.694 kb on - strand, within EX31_RS23970at 562.750 kb on - strand, within EX31_RS23970at 562.750 kb on - strand, within EX31_RS23970at 562.753 kb on + strand, within EX31_RS23970at 562.795 kb on - strand, within EX31_RS23970at 562.925 kb on + strand, within EX31_RS23970at 563.113 kb on - strandat 563.121 kb on + strandat 563.121 kb on + strandat 563.122 kb on - strandat 563.145 kb on + strandat 563.146 kb on - strandat 563.296 kb on + strand, within EX31_RS23975at 563.297 kb on - strand, within EX31_RS23975at 563.338 kb on + strand, within EX31_RS23975at 563.367 kb on + strand, within EX31_RS23975at 563.367 kb on + strand, within EX31_RS23975at 563.458 kb on - strand, within EX31_RS23975at 563.527 kb on - strand, within EX31_RS23975at 563.796 kb on + strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.797 kb on - strand, within EX31_RS23975at 563.826 kb on + strand, within EX31_RS23975at 563.847 kb on + strand, within EX31_RS23975at 563.848 kb on - strand, within EX31_RS23975at 563.954 kb on - strand, within EX31_RS23975at 564.004 kb on + strand, within EX31_RS23975at 564.028 kb on + strand, within EX31_RS23975at 564.029 kb on - strand, within EX31_RS23975at 564.199 kb on + strandat 564.288 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.308 kb on + strandat 564.350 kb on + strandat 564.350 kb on + strandat 564.351 kb on - strandat 564.354 kb on + strand, within EX31_RS23980at 564.354 kb on + strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.355 kb on - strand, within EX31_RS23980at 564.370 kb on - strand, within EX31_RS23980at 564.469 kb on - strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.493 kb on + strand, within EX31_RS23980at 564.527 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.605 kb on + strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.606 kb on - strand, within EX31_RS23980at 564.630 kb on + strand, within EX31_RS23980at 564.720 kb on - strand, within EX31_RS23980at 564.733 kb on + strand, within EX31_RS23980at 564.733 kb on + strand, within EX31_RS23980at 564.867 kb on + strand, within EX31_RS23980at 564.880 kb on + strand, within EX31_RS23980at 564.880 kb on + strand, within EX31_RS23980at 564.881 kb on - strand, within EX31_RS23980at 564.922 kb on - strand, within EX31_RS23980at 564.926 kb on + strandat 564.952 kb on - strandat 564.980 kb on + strandat 564.980 kb on + strandat 564.980 kb on + strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 564.981 kb on - strandat 565.108 kb on + strandat 565.108 kb on + strandat 565.205 kb on + strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.206 kb on - strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.207 kb on + strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985at 565.208 kb on - strand, within EX31_RS23985

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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562,057 + +0.9
562,058 - -0.1
562,067 + +0.2
562,286 - EX31_RS23965 0.50 -0.7
562,352 + EX31_RS23965 0.63 -0.5
562,391 + EX31_RS23965 0.70 -0.2
562,391 + EX31_RS23965 0.70 +0.3
562,391 + EX31_RS23965 0.70 +1.8
562,391 + EX31_RS23965 0.70 -1.4
562,395 + EX31_RS23965 0.71 +0.7
562,395 + EX31_RS23965 0.71 -0.8
562,424 + EX31_RS23965 0.76 +0.9
562,642 + EX31_RS23970 0.19 -0.7
562,643 - EX31_RS23970 0.19 +0.1
562,690 + EX31_RS23970 0.28 -0.3
562,693 + EX31_RS23970 0.29 -1.3
562,694 - EX31_RS23970 0.29 -1.3
562,694 - EX31_RS23970 0.29 -0.4
562,750 - EX31_RS23970 0.40 +0.5
562,750 - EX31_RS23970 0.40 -0.5
562,753 + EX31_RS23970 0.41 -0.3
562,795 - EX31_RS23970 0.49 -0.7
562,925 + EX31_RS23970 0.75 -1.2
563,113 - -0.2
563,121 + -0.2
563,121 + +0.0
563,122 - -0.2
563,145 + -0.3
563,146 - -1.2
563,296 + EX31_RS23975 0.20 -0.2
563,297 - EX31_RS23975 0.20 +0.8
563,338 + EX31_RS23975 0.24 -1.9
563,367 + EX31_RS23975 0.26 -0.3
563,367 + EX31_RS23975 0.26 -0.4
563,458 - EX31_RS23975 0.33 +0.9
563,527 - EX31_RS23975 0.39 +0.9
563,796 + EX31_RS23975 0.61 -0.3
563,797 - EX31_RS23975 0.61 +1.0
563,797 - EX31_RS23975 0.61 -0.1
563,797 - EX31_RS23975 0.61 +0.9
563,797 - EX31_RS23975 0.61 -0.0
563,797 - EX31_RS23975 0.61 -1.3
563,797 - EX31_RS23975 0.61 +0.2
563,826 + EX31_RS23975 0.63 +0.0
563,847 + EX31_RS23975 0.65 +0.2
563,848 - EX31_RS23975 0.65 -0.9
563,954 - EX31_RS23975 0.74 -0.1
564,004 + EX31_RS23975 0.78 -1.3
564,028 + EX31_RS23975 0.80 -0.4
564,029 - EX31_RS23975 0.80 -0.8
564,199 + +0.0
564,288 + +0.6
564,308 + +0.1
564,308 + +0.5
564,308 + -1.2
564,308 + -0.2
564,350 + -0.7
564,350 + -0.7
564,351 - -0.3
564,354 + EX31_RS23980 0.10 +0.2
564,354 + EX31_RS23980 0.10 +0.3
564,355 - EX31_RS23980 0.10 -0.1
564,355 - EX31_RS23980 0.10 +0.7
564,355 - EX31_RS23980 0.10 -0.7
564,370 - EX31_RS23980 0.13 -0.3
564,469 - EX31_RS23980 0.26 -0.2
564,493 + EX31_RS23980 0.30 +0.8
564,493 + EX31_RS23980 0.30 -0.4
564,493 + EX31_RS23980 0.30 -0.2
564,493 + EX31_RS23980 0.30 -2.4
564,527 + EX31_RS23980 0.34 -0.3
564,605 + EX31_RS23980 0.45 -0.8
564,605 + EX31_RS23980 0.45 +0.0
564,605 + EX31_RS23980 0.45 +0.3
564,606 - EX31_RS23980 0.45 -0.4
564,606 - EX31_RS23980 0.45 +0.3
564,606 - EX31_RS23980 0.45 -0.7
564,606 - EX31_RS23980 0.45 -0.8
564,630 + EX31_RS23980 0.49 +0.8
564,720 - EX31_RS23980 0.61 +0.9
564,733 + EX31_RS23980 0.63 -0.6
564,733 + EX31_RS23980 0.63 +0.5
564,867 + EX31_RS23980 0.82 -0.3
564,880 + EX31_RS23980 0.84 -0.4
564,880 + EX31_RS23980 0.84 +1.8
564,881 - EX31_RS23980 0.84 +0.6
564,922 - EX31_RS23980 0.90 -0.2
564,926 + +0.7
564,952 - -0.0
564,980 + +0.6
564,980 + -0.7
564,980 + -1.4
564,981 - -0.6
564,981 - +0.3
564,981 - -1.8
564,981 - -0.1
564,981 - +0.2
564,981 - +0.6
565,108 + +0.6
565,108 + +0.2
565,205 + EX31_RS23985 0.16 -2.5
565,206 - EX31_RS23985 0.16 +0.1
565,206 - EX31_RS23985 0.16 -0.9
565,206 - EX31_RS23985 0.16 -0.0
565,206 - EX31_RS23985 0.16 +0.5
565,206 - EX31_RS23985 0.16 +0.8
565,206 - EX31_RS23985 0.16 +1.5
565,207 + EX31_RS23985 0.16 +0.8
565,207 + EX31_RS23985 0.16 -1.4
565,207 + EX31_RS23985 0.16 -0.0
565,207 + EX31_RS23985 0.16 -0.2
565,207 + EX31_RS23985 0.16 +0.6
565,207 + EX31_RS23985 0.16 +0.4
565,207 + EX31_RS23985 0.16 -0.0
565,207 + EX31_RS23985 0.16 +0.3
565,207 + EX31_RS23985 0.16 +0.3
565,207 + EX31_RS23985 0.16 -1.4
565,207 + EX31_RS23985 0.16 -1.0
565,207 + EX31_RS23985 0.16 +0.1
565,207 + EX31_RS23985 0.16 +0.7
565,207 + EX31_RS23985 0.16 -0.6
565,207 + EX31_RS23985 0.16 -1.1
565,207 + EX31_RS23985 0.16 -0.2
565,207 + EX31_RS23985 0.16 -0.2
565,207 + EX31_RS23985 0.16 -0.8
565,207 + EX31_RS23985 0.16 +0.3
565,208 - EX31_RS23985 0.16 -0.4
565,208 - EX31_RS23985 0.16 +0.4
565,208 - EX31_RS23985 0.16 +0.3
565,208 - EX31_RS23985 0.16 +0.2
565,208 - EX31_RS23985 0.16 +0.2
565,208 - EX31_RS23985 0.16 -1.2
565,208 - EX31_RS23985 0.16 -1.5
565,208 - EX31_RS23985 0.16 +0.4
565,208 - EX31_RS23985 0.16 -0.3
565,208 - EX31_RS23985 0.16 -0.2
565,208 - EX31_RS23985 0.16 -0.8
565,208 - EX31_RS23985 0.16 -0.0
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 +0.4
565,208 - EX31_RS23985 0.16 -0.4
565,208 - EX31_RS23985 0.16 -1.2
565,208 - EX31_RS23985 0.16 +0.7
565,208 - EX31_RS23985 0.16 +1.0
565,208 - EX31_RS23985 0.16 +1.6
565,208 - EX31_RS23985 0.16 +0.3
565,208 - EX31_RS23985 0.16 +0.7
565,208 - EX31_RS23985 0.16 +0.9
565,208 - EX31_RS23985 0.16 -0.4
565,208 - EX31_RS23985 0.16 +0.6
565,208 - EX31_RS23985 0.16 +0.5
565,208 - EX31_RS23985 0.16 -0.7
565,208 - EX31_RS23985 0.16 -0.1
565,208 - EX31_RS23985 0.16 -0.2
565,208 - EX31_RS23985 0.16 -0.7
565,208 - EX31_RS23985 0.16 +1.0
565,208 - EX31_RS23985 0.16 +0.8

Or see this region's nucleotide sequence