Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18545 and EX31_RS18550 are separated by 51 nucleotides EX31_RS18550 and EX31_RS18555 are separated by 93 nucleotides EX31_RS18555 and EX31_RS18560 are separated by 221 nucleotides
EX31_RS18545: EX31_RS18545 - cysteine/glutathione ABC transporter ATP-binding protein/permease CydC, at 284,812 to 286,533
_RS18545
EX31_RS18550: EX31_RS18550 - leucyl/phenylalanyl-tRNA--protein transferase, at 286,585 to 287,319
_RS18550
EX31_RS18555: EX31_RS18555 - translation initiation factor IF-1, at 287,413 to 287,631
_RS18555
EX31_RS18560: EX31_RS18560 - ATP-dependent Clp protease ATP-binding subunit ClpA, at 287,853 to 290,135
_RS18560
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 286.030 kb on + strand, within EX31_RS18545 at 286.436 kb on + strand at 286.436 kb on + strand at 286.487 kb on + strand at 286.487 kb on + strand at 286.508 kb on - strand at 286.584 kb on + strand at 286.585 kb on - strand at 286.592 kb on + strand at 286.592 kb on + strand at 286.592 kb on + strand at 286.597 kb on - strand at 286.827 kb on + strand, within EX31_RS18550 at 287.039 kb on + strand, within EX31_RS18550 at 287.082 kb on + strand, within EX31_RS18550 at 287.082 kb on + strand, within EX31_RS18550 at 287.082 kb on + strand, within EX31_RS18550 at 287.082 kb on + strand, within EX31_RS18550 at 287.083 kb on - strand, within EX31_RS18550 at 287.083 kb on - strand, within EX31_RS18550 at 287.094 kb on + strand, within EX31_RS18550 at 287.094 kb on + strand, within EX31_RS18550 at 287.094 kb on + strand, within EX31_RS18550 at 287.270 kb on + strand at 287.271 kb on - strand at 287.310 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.317 kb on + strand at 287.318 kb on - strand at 287.318 kb on - strand at 287.336 kb on + strand at 287.336 kb on + strand at 287.336 kb on + strand at 287.336 kb on + strand at 287.337 kb on - strand at 287.380 kb on + strand at 287.392 kb on + strand at 287.632 kb on + strand at 287.766 kb on + strand at 287.766 kb on + strand at 287.780 kb on - strand at 287.780 kb on - strand at 287.784 kb on - strand at 287.784 kb on - strand at 287.894 kb on + strand at 287.895 kb on - strand at 287.903 kb on - strand at 288.049 kb on + strand at 288.049 kb on + strand at 288.050 kb on - strand at 288.050 kb on - strand at 288.138 kb on - strand, within EX31_RS18560 at 288.171 kb on - strand, within EX31_RS18560 at 288.192 kb on - strand, within EX31_RS18560 at 288.192 kb on - strand, within EX31_RS18560 at 288.291 kb on - strand, within EX31_RS18560 at 288.291 kb on - strand, within EX31_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 286,030 + EX31_RS18545 0.71 +2.2 286,436 + -0.4 286,436 + -0.6 286,487 + -0.1 286,487 + -0.2 286,508 - -1.2 286,584 + +0.1 286,585 - +0.2 286,592 + -0.7 286,592 + -0.0 286,592 + -1.7 286,597 - -0.9 286,827 + EX31_RS18550 0.33 -0.3 287,039 + EX31_RS18550 0.62 +0.8 287,082 + EX31_RS18550 0.68 -1.0 287,082 + EX31_RS18550 0.68 -0.6 287,082 + EX31_RS18550 0.68 -0.1 287,082 + EX31_RS18550 0.68 -0.5 287,083 - EX31_RS18550 0.68 -1.8 287,083 - EX31_RS18550 0.68 -0.6 287,094 + EX31_RS18550 0.69 -0.7 287,094 + EX31_RS18550 0.69 -1.0 287,094 + EX31_RS18550 0.69 -1.5 287,270 + -0.4 287,271 - +1.2 287,310 + -0.4 287,317 + +0.3 287,317 + +0.6 287,317 + -0.3 287,317 + +0.1 287,317 + -0.4 287,317 + +0.6 287,317 + -0.9 287,317 + +0.9 287,317 + -0.7 287,318 - -0.8 287,318 - -0.2 287,336 + -0.2 287,336 + -1.5 287,336 + -0.2 287,336 + -0.3 287,337 - -0.3 287,380 + +2.9 287,392 + +0.5 287,632 + +1.0 287,766 + +1.0 287,766 + +0.0 287,780 - +1.1 287,780 - +0.2 287,784 - +0.6 287,784 - -1.0 287,894 + -0.5 287,895 - +0.9 287,903 - +0.5 288,049 + -0.5 288,049 + -0.6 288,050 - +0.7 288,050 - -0.1 288,138 - EX31_RS18560 0.12 +0.5 288,171 - EX31_RS18560 0.14 +0.6 288,192 - EX31_RS18560 0.15 +0.6 288,192 - EX31_RS18560 0.15 +0.1 288,291 - EX31_RS18560 0.19 -0.6 288,291 - EX31_RS18560 0.19 +0.3
Or see this region's nucleotide sequence