Strain Fitness in Rahnella sp. WP5 around EX31_RS17460

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS17455 and EX31_RS17460 overlap by 8 nucleotidesEX31_RS17460 and EX31_RS17465 are separated by 245 nucleotidesEX31_RS17465 and EX31_RS17470 are separated by 83 nucleotides EX31_RS17455: EX31_RS17455 - carbon starvation protein A, at 42,988 to 45,054 _RS17455 EX31_RS17460: EX31_RS17460 - putative selenoprotein, at 45,047 to 45,352 _RS17460 EX31_RS17465: EX31_RS17465 - hypothetical protein, at 45,598 to 45,933 _RS17465 EX31_RS17470: EX31_RS17470 - nitrogen assimilation transcriptional regulator, at 46,017 to 46,943 _RS17470 Position (kb) 45 46Strain fitness (log2 ratio) -1 0 1 2at 44.155 kb on + strand, within EX31_RS17455at 44.156 kb on - strand, within EX31_RS17455at 44.156 kb on - strand, within EX31_RS17455at 44.414 kb on + strand, within EX31_RS17455at 44.419 kb on - strand, within EX31_RS17455at 44.419 kb on - strand, within EX31_RS17455at 44.460 kb on + strand, within EX31_RS17455at 44.461 kb on - strand, within EX31_RS17455at 44.603 kb on + strand, within EX31_RS17455at 44.603 kb on + strand, within EX31_RS17455at 44.604 kb on - strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.607 kb on + strand, within EX31_RS17455at 44.608 kb on - strand, within EX31_RS17455at 44.608 kb on - strand, within EX31_RS17455at 44.608 kb on - strand, within EX31_RS17455at 44.634 kb on + strand, within EX31_RS17455at 44.730 kb on + strand, within EX31_RS17455at 44.730 kb on + strand, within EX31_RS17455at 44.731 kb on - strand, within EX31_RS17455at 44.743 kb on - strand, within EX31_RS17455at 44.743 kb on - strand, within EX31_RS17455at 44.743 kb on - strand, within EX31_RS17455at 45.027 kb on - strandat 45.067 kb on - strandat 45.094 kb on - strand, within EX31_RS17460at 45.172 kb on - strand, within EX31_RS17460at 45.172 kb on - strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.227 kb on + strand, within EX31_RS17460at 45.361 kb on + strandat 45.394 kb on + strandat 45.464 kb on - strandat 45.464 kb on - strandat 45.542 kb on + strandat 45.542 kb on + strandat 45.543 kb on - strandat 45.543 kb on - strandat 45.556 kb on + strandat 45.562 kb on + strandat 45.563 kb on - strandat 45.597 kb on + strandat 45.597 kb on + strandat 45.598 kb on - strandat 45.598 kb on - strandat 45.598 kb on - strandat 45.645 kb on + strand, within EX31_RS17465at 45.645 kb on + strand, within EX31_RS17465at 45.650 kb on + strand, within EX31_RS17465at 45.651 kb on - strand, within EX31_RS17465at 45.651 kb on - strand, within EX31_RS17465at 45.651 kb on - strand, within EX31_RS17465at 45.694 kb on + strand, within EX31_RS17465at 45.694 kb on + strand, within EX31_RS17465at 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.913 kb on + strandat 45.914 kb on - strandat 45.914 kb on - strandat 45.914 kb on - strandat 45.914 kb on - strandat 45.932 kb on - strandat 45.963 kb on - strandat 46.229 kb on + strand, within EX31_RS17470at 46.230 kb on - strand, within EX31_RS17470at 46.305 kb on + strand, within EX31_RS17470at 46.306 kb on - strand, within EX31_RS17470

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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44,155 + EX31_RS17455 0.56 +1.0
44,156 - EX31_RS17455 0.57 +0.8
44,156 - EX31_RS17455 0.57 -0.3
44,414 + EX31_RS17455 0.69 +1.0
44,419 - EX31_RS17455 0.69 +0.5
44,419 - EX31_RS17455 0.69 -0.0
44,460 + EX31_RS17455 0.71 +0.8
44,461 - EX31_RS17455 0.71 -1.4
44,603 + EX31_RS17455 0.78 +0.8
44,603 + EX31_RS17455 0.78 -0.5
44,604 - EX31_RS17455 0.78 -0.4
44,607 + EX31_RS17455 0.78 -0.0
44,607 + EX31_RS17455 0.78 -0.0
44,607 + EX31_RS17455 0.78 -0.2
44,607 + EX31_RS17455 0.78 -0.0
44,607 + EX31_RS17455 0.78 -0.6
44,607 + EX31_RS17455 0.78 +0.0
44,608 - EX31_RS17455 0.78 -1.1
44,608 - EX31_RS17455 0.78 -1.0
44,608 - EX31_RS17455 0.78 -1.0
44,634 + EX31_RS17455 0.80 +0.2
44,730 + EX31_RS17455 0.84 -0.2
44,730 + EX31_RS17455 0.84 +0.5
44,731 - EX31_RS17455 0.84 -0.5
44,743 - EX31_RS17455 0.85 -0.1
44,743 - EX31_RS17455 0.85 +0.3
44,743 - EX31_RS17455 0.85 +0.2
45,027 - +0.1
45,067 - -0.3
45,094 - EX31_RS17460 0.15 +0.0
45,172 - EX31_RS17460 0.41 -1.1
45,172 - EX31_RS17460 0.41 -1.0
45,227 + EX31_RS17460 0.59 -1.0
45,227 + EX31_RS17460 0.59 -0.3
45,227 + EX31_RS17460 0.59 -0.6
45,227 + EX31_RS17460 0.59 -1.2
45,361 + +0.1
45,394 + +0.3
45,464 - -0.5
45,464 - +2.0
45,542 + -0.3
45,542 + +0.9
45,543 - +0.3
45,543 - -0.4
45,556 + +0.5
45,562 + -0.4
45,563 - -1.1
45,597 + +0.3
45,597 + +0.0
45,598 - +0.0
45,598 - +0.1
45,598 - -0.4
45,645 + EX31_RS17465 0.14 -0.3
45,645 + EX31_RS17465 0.14 +0.4
45,650 + EX31_RS17465 0.15 -0.2
45,651 - EX31_RS17465 0.16 -0.6
45,651 - EX31_RS17465 0.16 +0.3
45,651 - EX31_RS17465 0.16 -0.5
45,694 + EX31_RS17465 0.29 +1.3
45,694 + EX31_RS17465 0.29 +0.1
45,913 + -0.8
45,913 + -0.6
45,913 + +0.5
45,913 + +0.5
45,913 + -0.8
45,913 + -0.8
45,914 - -0.2
45,914 - -0.1
45,914 - +0.3
45,914 - +1.0
45,932 - +0.2
45,963 - +0.2
46,229 + EX31_RS17470 0.23 +1.9
46,230 - EX31_RS17470 0.23 -0.8
46,305 + EX31_RS17470 0.31 +0.6
46,306 - EX31_RS17470 0.31 +1.3

Or see this region's nucleotide sequence