Strain Fitness in Rahnella sp. WP5 around EX31_RS14520

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS14515 and EX31_RS14520 are separated by 88 nucleotidesEX31_RS14520 and EX31_RS14525 are separated by 158 nucleotides EX31_RS14515: EX31_RS14515 - site-specific integrase, at 83,785 to 85,050 _RS14515 EX31_RS14520: EX31_RS14520 - DUF2971 domain-containing protein, at 85,139 to 86,101 _RS14520 EX31_RS14525: EX31_RS14525 - site-specific DNA-methyltransferase, at 86,260 to 87,516 _RS14525 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 84.168 kb on + strand, within EX31_RS14515at 84.195 kb on + strand, within EX31_RS14515at 84.210 kb on - strand, within EX31_RS14515at 84.246 kb on + strand, within EX31_RS14515at 84.246 kb on + strand, within EX31_RS14515at 84.246 kb on + strand, within EX31_RS14515at 84.246 kb on + strand, within EX31_RS14515at 84.246 kb on + strand, within EX31_RS14515at 84.247 kb on - strand, within EX31_RS14515at 84.247 kb on - strand, within EX31_RS14515at 84.247 kb on - strand, within EX31_RS14515at 84.288 kb on + strand, within EX31_RS14515at 84.288 kb on + strand, within EX31_RS14515at 84.288 kb on + strand, within EX31_RS14515at 84.288 kb on + strand, within EX31_RS14515at 84.288 kb on + strand, within EX31_RS14515at 84.289 kb on - strand, within EX31_RS14515at 84.289 kb on - strand, within EX31_RS14515at 84.289 kb on - strand, within EX31_RS14515at 84.289 kb on - strand, within EX31_RS14515at 84.289 kb on - strand, within EX31_RS14515at 84.297 kb on + strand, within EX31_RS14515at 84.324 kb on + strand, within EX31_RS14515at 84.325 kb on - strand, within EX31_RS14515at 84.326 kb on + strand, within EX31_RS14515at 84.326 kb on + strand, within EX31_RS14515at 84.326 kb on + strand, within EX31_RS14515at 84.327 kb on - strand, within EX31_RS14515at 84.327 kb on - strand, within EX31_RS14515at 84.327 kb on - strand, within EX31_RS14515at 84.341 kb on + strand, within EX31_RS14515at 84.341 kb on + strand, within EX31_RS14515at 84.342 kb on - strand, within EX31_RS14515at 84.342 kb on - strand, within EX31_RS14515at 84.342 kb on - strand, within EX31_RS14515at 84.351 kb on + strand, within EX31_RS14515at 84.351 kb on + strand, within EX31_RS14515at 84.351 kb on + strand, within EX31_RS14515at 84.351 kb on + strand, within EX31_RS14515at 84.351 kb on + strand, within EX31_RS14515at 84.351 kb on + strand, within EX31_RS14515at 84.352 kb on - strand, within EX31_RS14515at 84.352 kb on - strand, within EX31_RS14515at 84.369 kb on + strand, within EX31_RS14515at 84.428 kb on + strand, within EX31_RS14515at 84.456 kb on - strand, within EX31_RS14515at 84.456 kb on - strand, within EX31_RS14515at 84.456 kb on - strand, within EX31_RS14515at 84.501 kb on + strand, within EX31_RS14515at 84.502 kb on - strand, within EX31_RS14515at 84.502 kb on - strand, within EX31_RS14515at 84.534 kb on + strand, within EX31_RS14515at 84.534 kb on + strand, within EX31_RS14515at 84.534 kb on + strand, within EX31_RS14515at 84.596 kb on + strand, within EX31_RS14515at 84.596 kb on + strand, within EX31_RS14515at 84.596 kb on + strand, within EX31_RS14515at 84.596 kb on + strand, within EX31_RS14515at 84.596 kb on + strand, within EX31_RS14515at 84.597 kb on - strand, within EX31_RS14515at 84.597 kb on - strand, within EX31_RS14515at 84.597 kb on - strand, within EX31_RS14515at 84.665 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.690 kb on + strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.691 kb on - strand, within EX31_RS14515at 84.777 kb on + strand, within EX31_RS14515at 84.778 kb on - strand, within EX31_RS14515at 84.790 kb on - strand, within EX31_RS14515at 84.790 kb on - strand, within EX31_RS14515at 84.813 kb on + strand, within EX31_RS14515at 84.816 kb on + strand, within EX31_RS14515at 84.816 kb on + strand, within EX31_RS14515at 84.816 kb on + strand, within EX31_RS14515at 84.817 kb on - strand, within EX31_RS14515at 84.925 kb on + strandat 84.926 kb on - strandat 84.926 kb on - strandat 84.940 kb on + strandat 84.941 kb on - strandat 84.965 kb on + strandat 84.965 kb on + strandat 84.966 kb on - strandat 84.966 kb on - strandat 85.012 kb on + strandat 85.012 kb on + strandat 85.012 kb on + strandat 85.012 kb on + strandat 85.012 kb on + strandat 85.013 kb on - strandat 85.013 kb on - strandat 85.013 kb on - strandat 85.039 kb on - strandat 85.040 kb on + strandat 85.040 kb on + strandat 85.040 kb on + strandat 85.040 kb on + strandat 85.040 kb on + strandat 85.041 kb on - strandat 85.041 kb on - strandat 85.041 kb on - strandat 85.041 kb on - strandat 85.102 kb on + strandat 85.120 kb on - strandat 85.148 kb on - strandat 85.203 kb on + strandat 85.251 kb on - strand, within EX31_RS14520at 85.324 kb on - strand, within EX31_RS14520at 85.397 kb on + strand, within EX31_RS14520at 85.398 kb on - strand, within EX31_RS14520at 85.398 kb on - strand, within EX31_RS14520at 85.449 kb on - strand, within EX31_RS14520at 85.469 kb on + strand, within EX31_RS14520at 85.528 kb on - strand, within EX31_RS14520at 85.546 kb on - strand, within EX31_RS14520at 85.602 kb on + strand, within EX31_RS14520at 85.627 kb on + strand, within EX31_RS14520at 85.883 kb on + strand, within EX31_RS14520at 85.888 kb on - strand, within EX31_RS14520at 86.091 kb on - strandat 86.091 kb on - strandat 86.110 kb on - strandat 86.111 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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84,168 + EX31_RS14515 0.30 -0.0
84,195 + EX31_RS14515 0.32 -1.0
84,210 - EX31_RS14515 0.34 -0.3
84,246 + EX31_RS14515 0.36 +0.1
84,246 + EX31_RS14515 0.36 +0.7
84,246 + EX31_RS14515 0.36 +0.1
84,246 + EX31_RS14515 0.36 +0.1
84,246 + EX31_RS14515 0.36 -0.4
84,247 - EX31_RS14515 0.36 -0.1
84,247 - EX31_RS14515 0.36 -0.1
84,247 - EX31_RS14515 0.36 -0.6
84,288 + EX31_RS14515 0.40 +0.1
84,288 + EX31_RS14515 0.40 -0.5
84,288 + EX31_RS14515 0.40 +0.0
84,288 + EX31_RS14515 0.40 -0.1
84,288 + EX31_RS14515 0.40 -0.6
84,289 - EX31_RS14515 0.40 -0.9
84,289 - EX31_RS14515 0.40 -0.1
84,289 - EX31_RS14515 0.40 +0.6
84,289 - EX31_RS14515 0.40 -0.0
84,289 - EX31_RS14515 0.40 -0.5
84,297 + EX31_RS14515 0.40 +0.4
84,324 + EX31_RS14515 0.43 -0.1
84,325 - EX31_RS14515 0.43 +0.3
84,326 + EX31_RS14515 0.43 -0.6
84,326 + EX31_RS14515 0.43 -0.2
84,326 + EX31_RS14515 0.43 -0.1
84,327 - EX31_RS14515 0.43 -1.0
84,327 - EX31_RS14515 0.43 -0.5
84,327 - EX31_RS14515 0.43 -0.0
84,341 + EX31_RS14515 0.44 -0.1
84,341 + EX31_RS14515 0.44 -0.1
84,342 - EX31_RS14515 0.44 -0.0
84,342 - EX31_RS14515 0.44 -0.6
84,342 - EX31_RS14515 0.44 -0.3
84,351 + EX31_RS14515 0.45 -0.7
84,351 + EX31_RS14515 0.45 -0.0
84,351 + EX31_RS14515 0.45 +0.1
84,351 + EX31_RS14515 0.45 -0.3
84,351 + EX31_RS14515 0.45 -0.4
84,351 + EX31_RS14515 0.45 +0.3
84,352 - EX31_RS14515 0.45 -0.3
84,352 - EX31_RS14515 0.45 +1.6
84,369 + EX31_RS14515 0.46 +0.2
84,428 + EX31_RS14515 0.51 -0.3
84,456 - EX31_RS14515 0.53 +0.1
84,456 - EX31_RS14515 0.53 -0.1
84,456 - EX31_RS14515 0.53 +0.0
84,501 + EX31_RS14515 0.57 -0.6
84,502 - EX31_RS14515 0.57 -0.1
84,502 - EX31_RS14515 0.57 -0.2
84,534 + EX31_RS14515 0.59 -0.2
84,534 + EX31_RS14515 0.59 -1.3
84,534 + EX31_RS14515 0.59 -0.0
84,596 + EX31_RS14515 0.64 +0.1
84,596 + EX31_RS14515 0.64 -1.0
84,596 + EX31_RS14515 0.64 -0.0
84,596 + EX31_RS14515 0.64 -0.6
84,596 + EX31_RS14515 0.64 -0.4
84,597 - EX31_RS14515 0.64 -0.3
84,597 - EX31_RS14515 0.64 -2.3
84,597 - EX31_RS14515 0.64 -0.4
84,665 + EX31_RS14515 0.70 +0.8
84,690 + EX31_RS14515 0.71 +0.4
84,690 + EX31_RS14515 0.71 -0.5
84,690 + EX31_RS14515 0.71 -0.1
84,690 + EX31_RS14515 0.71 -0.7
84,690 + EX31_RS14515 0.71 +0.6
84,690 + EX31_RS14515 0.71 -0.3
84,690 + EX31_RS14515 0.71 -0.4
84,690 + EX31_RS14515 0.71 +0.6
84,690 + EX31_RS14515 0.71 -0.4
84,690 + EX31_RS14515 0.71 +0.8
84,690 + EX31_RS14515 0.71 -0.4
84,690 + EX31_RS14515 0.71 -0.4
84,690 + EX31_RS14515 0.71 -0.0
84,690 + EX31_RS14515 0.71 +0.6
84,690 + EX31_RS14515 0.71 -0.7
84,691 - EX31_RS14515 0.72 +0.0
84,691 - EX31_RS14515 0.72 +0.4
84,691 - EX31_RS14515 0.72 +0.3
84,691 - EX31_RS14515 0.72 +0.1
84,691 - EX31_RS14515 0.72 -0.4
84,691 - EX31_RS14515 0.72 -0.1
84,691 - EX31_RS14515 0.72 +0.3
84,691 - EX31_RS14515 0.72 +0.2
84,691 - EX31_RS14515 0.72 -0.1
84,691 - EX31_RS14515 0.72 +0.3
84,691 - EX31_RS14515 0.72 -0.9
84,691 - EX31_RS14515 0.72 -0.0
84,691 - EX31_RS14515 0.72 -0.6
84,691 - EX31_RS14515 0.72 -0.3
84,777 + EX31_RS14515 0.78 -0.2
84,778 - EX31_RS14515 0.78 +1.4
84,790 - EX31_RS14515 0.79 +0.7
84,790 - EX31_RS14515 0.79 -0.4
84,813 + EX31_RS14515 0.81 +0.4
84,816 + EX31_RS14515 0.81 +0.0
84,816 + EX31_RS14515 0.81 -0.1
84,816 + EX31_RS14515 0.81 +0.3
84,817 - EX31_RS14515 0.82 -1.4
84,925 + +0.2
84,926 - -0.1
84,926 - -0.7
84,940 + -0.2
84,941 - -0.4
84,965 + -0.3
84,965 + +0.2
84,966 - -0.1
84,966 - -0.3
85,012 + -0.5
85,012 + -0.0
85,012 + -0.6
85,012 + -1.7
85,012 + -0.9
85,013 - +0.4
85,013 - -0.5
85,013 - -0.1
85,039 - +0.1
85,040 + +0.3
85,040 + -0.7
85,040 + -0.0
85,040 + -0.1
85,040 + +0.2
85,041 - +0.3
85,041 - +0.4
85,041 - -0.4
85,041 - +0.2
85,102 + -0.4
85,120 - -0.5
85,148 - -0.7
85,203 + -0.2
85,251 - EX31_RS14520 0.12 +0.3
85,324 - EX31_RS14520 0.19 -1.5
85,397 + EX31_RS14520 0.27 -0.6
85,398 - EX31_RS14520 0.27 +0.3
85,398 - EX31_RS14520 0.27 -0.7
85,449 - EX31_RS14520 0.32 -0.7
85,469 + EX31_RS14520 0.34 -2.1
85,528 - EX31_RS14520 0.40 -0.1
85,546 - EX31_RS14520 0.42 +0.0
85,602 + EX31_RS14520 0.48 +0.1
85,627 + EX31_RS14520 0.51 -1.4
85,883 + EX31_RS14520 0.77 -1.1
85,888 - EX31_RS14520 0.78 -0.1
86,091 - -1.0
86,091 - -0.8
86,110 - -0.2
86,111 + -0.6

Or see this region's nucleotide sequence