Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS13630 and EX31_RS13635 are separated by 174 nucleotides EX31_RS13635 and EX31_RS13640 overlap by 11 nucleotides EX31_RS13640 and EX31_RS13645 are separated by 174 nucleotides
EX31_RS13630: EX31_RS13630 - MFS transporter, at 163,287 to 164,471
_RS13630
EX31_RS13635: EX31_RS13635 - AzlC family ABC transporter permease, at 164,646 to 165,407
_RS13635
EX31_RS13640: EX31_RS13640 - L-valine transporter subunit YgaH, at 165,397 to 165,735
_RS13640
EX31_RS13645: EX31_RS13645 - transcriptional repressor MprA, at 165,910 to 166,431
_RS13645
Position (kb) 164
165
166 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 163.709 kb on + strand, within EX31_RS13630 at 163.709 kb on + strand, within EX31_RS13630 at 163.709 kb on + strand, within EX31_RS13630 at 163.710 kb on - strand, within EX31_RS13630 at 163.710 kb on - strand, within EX31_RS13630 at 163.710 kb on - strand, within EX31_RS13630 at 163.731 kb on - strand, within EX31_RS13630 at 163.791 kb on + strand, within EX31_RS13630 at 163.791 kb on + strand, within EX31_RS13630 at 163.791 kb on + strand, within EX31_RS13630 at 163.904 kb on + strand, within EX31_RS13630 at 163.904 kb on + strand, within EX31_RS13630 at 163.930 kb on + strand, within EX31_RS13630 at 163.931 kb on - strand, within EX31_RS13630 at 163.931 kb on - strand, within EX31_RS13630 at 163.931 kb on - strand, within EX31_RS13630 at 163.931 kb on - strand, within EX31_RS13630 at 164.019 kb on + strand, within EX31_RS13630 at 164.020 kb on - strand, within EX31_RS13630 at 164.020 kb on - strand, within EX31_RS13630 at 164.039 kb on - strand, within EX31_RS13630 at 164.109 kb on - strand, within EX31_RS13630 at 164.155 kb on + strand, within EX31_RS13630 at 164.156 kb on - strand, within EX31_RS13630 at 164.245 kb on + strand, within EX31_RS13630 at 164.273 kb on + strand, within EX31_RS13630 at 164.314 kb on - strand, within EX31_RS13630 at 164.314 kb on - strand, within EX31_RS13630 at 164.325 kb on + strand, within EX31_RS13630 at 164.325 kb on + strand, within EX31_RS13630 at 164.325 kb on + strand, within EX31_RS13630 at 164.325 kb on + strand, within EX31_RS13630 at 164.325 kb on + strand, within EX31_RS13630 at 164.325 kb on + strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.326 kb on - strand, within EX31_RS13630 at 164.370 kb on + strand at 164.388 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.420 kb on + strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.421 kb on - strand at 164.422 kb on + strand at 164.422 kb on + strand at 164.423 kb on - strand at 164.423 kb on - strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.453 kb on + strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.454 kb on - strand at 164.457 kb on + strand at 164.457 kb on + strand at 164.457 kb on + strand at 164.457 kb on + strand at 164.457 kb on + strand at 164.458 kb on - strand at 164.458 kb on - strand at 164.458 kb on - strand at 164.458 kb on - strand at 164.458 kb on - strand at 164.458 kb on - strand at 164.472 kb on + strand at 164.477 kb on + strand at 164.477 kb on + strand at 164.478 kb on - strand at 164.478 kb on - strand at 164.478 kb on - strand at 164.485 kb on + strand at 164.485 kb on + strand at 164.485 kb on + strand at 164.485 kb on + strand at 164.485 kb on + strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.486 kb on - strand at 164.517 kb on + strand at 164.545 kb on + strand at 164.570 kb on + strand at 164.570 kb on + strand at 164.570 kb on + strand at 164.570 kb on + strand at 164.570 kb on + strand at 164.570 kb on + strand at 164.570 kb on + strand at 164.571 kb on - strand at 164.571 kb on - strand at 164.571 kb on - strand at 164.574 kb on + strand at 164.574 kb on + strand at 164.574 kb on + strand at 164.574 kb on + strand at 164.574 kb on + strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.575 kb on - strand at 164.585 kb on - strand at 164.591 kb on + strand at 164.592 kb on - strand at 164.592 kb on - strand at 164.592 kb on - strand at 164.641 kb on + strand at 164.641 kb on + strand at 164.642 kb on - strand at 164.642 kb on - strand at 164.642 kb on - strand at 164.642 kb on - strand at 164.642 kb on - strand at 164.642 kb on - strand at 164.708 kb on + strand at 164.708 kb on + strand at 164.708 kb on + strand at 164.709 kb on - strand at 164.709 kb on - strand at 164.709 kb on - strand at 164.709 kb on - strand at 164.711 kb on + strand at 164.711 kb on + strand at 164.712 kb on - strand at 164.727 kb on - strand, within EX31_RS13635 at 164.782 kb on + strand, within EX31_RS13635 at 164.782 kb on + strand, within EX31_RS13635 at 164.782 kb on + strand, within EX31_RS13635 at 164.782 kb on + strand, within EX31_RS13635 at 164.782 kb on + strand, within EX31_RS13635 at 164.783 kb on - strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.822 kb on + strand, within EX31_RS13635 at 164.823 kb on - strand, within EX31_RS13635 at 164.823 kb on - strand, within EX31_RS13635 at 164.826 kb on + strand, within EX31_RS13635 at 164.827 kb on - strand, within EX31_RS13635 at 164.932 kb on - strand, within EX31_RS13635 at 164.932 kb on - strand, within EX31_RS13635 at 165.143 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.191 kb on + strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.192 kb on - strand, within EX31_RS13635 at 165.234 kb on - strand, within EX31_RS13635 at 165.234 kb on - strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.250 kb on + strand, within EX31_RS13635 at 165.251 kb on - strand, within EX31_RS13635 at 165.251 kb on - strand, within EX31_RS13635 at 165.388 kb on + strand at 165.388 kb on + strand at 165.389 kb on - strand at 165.389 kb on - strand at 165.445 kb on + strand, within EX31_RS13640 at 165.445 kb on + strand, within EX31_RS13640 at 165.445 kb on + strand, within EX31_RS13640 at 165.445 kb on + strand, within EX31_RS13640 at 165.446 kb on - strand, within EX31_RS13640 at 165.446 kb on - strand, within EX31_RS13640 at 165.669 kb on + strand, within EX31_RS13640 at 165.692 kb on + strand, within EX31_RS13640 at 165.692 kb on + strand, within EX31_RS13640 at 165.697 kb on + strand, within EX31_RS13640 at 165.747 kb on - strand at 165.751 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.781 kb on + strand at 165.786 kb on + strand at 165.787 kb on - strand at 165.787 kb on - strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.823 kb on + strand at 165.824 kb on - strand at 165.824 kb on - strand at 165.824 kb on - strand at 165.858 kb on - strand at 165.858 kb on - strand at 165.860 kb on + strand at 165.863 kb on + strand at 165.867 kb on + strand at 165.876 kb on + strand at 165.879 kb on + strand at 165.879 kb on + strand at 165.879 kb on + strand at 165.890 kb on + strand at 165.890 kb on + strand at 166.044 kb on + strand, within EX31_RS13645 at 166.044 kb on + strand, within EX31_RS13645 at 166.281 kb on + strand, within EX31_RS13645 at 166.281 kb on + strand, within EX31_RS13645 at 166.292 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.308 kb on + strand, within EX31_RS13645 at 166.337 kb on + strand, within EX31_RS13645 at 166.337 kb on + strand, within EX31_RS13645 at 166.361 kb on + strand, within EX31_RS13645 at 166.385 kb on + strand at 166.385 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 163,709 + EX31_RS13630 0.36 -0.5 163,709 + EX31_RS13630 0.36 -0.1 163,709 + EX31_RS13630 0.36 +0.1 163,710 - EX31_RS13630 0.36 -1.1 163,710 - EX31_RS13630 0.36 -0.2 163,710 - EX31_RS13630 0.36 -0.2 163,731 - EX31_RS13630 0.37 -1.6 163,791 + EX31_RS13630 0.43 -0.4 163,791 + EX31_RS13630 0.43 -0.6 163,791 + EX31_RS13630 0.43 +0.7 163,904 + EX31_RS13630 0.52 +0.4 163,904 + EX31_RS13630 0.52 +0.7 163,930 + EX31_RS13630 0.54 -0.4 163,931 - EX31_RS13630 0.54 +0.7 163,931 - EX31_RS13630 0.54 +0.1 163,931 - EX31_RS13630 0.54 -0.4 163,931 - EX31_RS13630 0.54 -0.1 164,019 + EX31_RS13630 0.62 -0.5 164,020 - EX31_RS13630 0.62 +0.1 164,020 - EX31_RS13630 0.62 -0.3 164,039 - EX31_RS13630 0.63 -0.5 164,109 - EX31_RS13630 0.69 -0.2 164,155 + EX31_RS13630 0.73 +0.2 164,156 - EX31_RS13630 0.73 -0.1 164,245 + EX31_RS13630 0.81 -0.6 164,273 + EX31_RS13630 0.83 -0.4 164,314 - EX31_RS13630 0.87 +0.8 164,314 - EX31_RS13630 0.87 -0.4 164,325 + EX31_RS13630 0.88 +0.1 164,325 + EX31_RS13630 0.88 -0.1 164,325 + EX31_RS13630 0.88 -1.3 164,325 + EX31_RS13630 0.88 -0.9 164,325 + EX31_RS13630 0.88 -0.4 164,325 + EX31_RS13630 0.88 +0.5 164,326 - EX31_RS13630 0.88 +0.8 164,326 - EX31_RS13630 0.88 -0.5 164,326 - EX31_RS13630 0.88 +0.0 164,326 - EX31_RS13630 0.88 -0.8 164,326 - EX31_RS13630 0.88 -0.0 164,326 - EX31_RS13630 0.88 -0.8 164,326 - EX31_RS13630 0.88 +0.1 164,326 - EX31_RS13630 0.88 -0.1 164,326 - EX31_RS13630 0.88 -0.1 164,326 - EX31_RS13630 0.88 -0.7 164,326 - EX31_RS13630 0.88 -0.2 164,326 - EX31_RS13630 0.88 -0.1 164,326 - EX31_RS13630 0.88 +0.4 164,326 - EX31_RS13630 0.88 +0.1 164,326 - EX31_RS13630 0.88 -0.2 164,370 + -0.5 164,388 + -1.6 164,420 + -0.5 164,420 + +0.4 164,420 + -0.1 164,420 + +0.7 164,420 + +1.7 164,420 + -0.3 164,420 + +0.8 164,420 + -0.3 164,421 - +0.6 164,421 - -0.2 164,421 - -0.4 164,421 - -0.8 164,421 - +0.6 164,421 - +0.3 164,421 - +0.3 164,421 - -0.0 164,421 - -0.4 164,421 - +0.4 164,421 - +0.0 164,421 - -0.3 164,422 + -0.5 164,422 + -1.2 164,423 - -1.4 164,423 - -0.1 164,453 + -1.6 164,453 + -0.1 164,453 + -0.2 164,453 + -0.2 164,453 + -0.3 164,453 + -0.9 164,453 + -0.2 164,453 + -0.2 164,453 + -0.2 164,453 + -0.8 164,453 + +0.1 164,453 + -0.5 164,454 - -0.6 164,454 - -0.5 164,454 - +0.2 164,454 - -0.5 164,454 - +0.3 164,454 - -1.9 164,454 - -0.3 164,454 - +0.7 164,454 - -1.5 164,457 + +0.2 164,457 + +0.7 164,457 + +1.0 164,457 + -0.8 164,457 + +0.1 164,458 - -0.9 164,458 - -1.1 164,458 - -0.8 164,458 - -1.6 164,458 - +1.0 164,458 - -1.9 164,472 + -0.9 164,477 + -0.4 164,477 + -2.3 164,478 - -0.1 164,478 - -0.3 164,478 - -0.5 164,485 + -0.0 164,485 + +1.7 164,485 + -0.4 164,485 + +0.3 164,485 + -0.1 164,486 - -0.1 164,486 - -1.2 164,486 - +0.2 164,486 - +0.3 164,517 + +0.5 164,545 + +0.3 164,570 + -0.4 164,570 + +0.1 164,570 + +0.4 164,570 + -0.6 164,570 + -0.8 164,570 + -0.7 164,570 + -0.1 164,571 - +0.6 164,571 - -0.4 164,571 - -1.5 164,574 + -0.9 164,574 + +0.4 164,574 + -1.2 164,574 + +0.2 164,574 + +0.1 164,575 - +0.1 164,575 - -1.4 164,575 - +0.3 164,575 - -0.2 164,575 - +0.1 164,575 - -0.1 164,575 - +0.7 164,575 - -0.7 164,585 - +0.1 164,591 + -0.4 164,592 - -0.0 164,592 - +0.1 164,592 - +0.1 164,641 + -0.3 164,641 + -0.1 164,642 - +0.3 164,642 - -0.6 164,642 - -0.8 164,642 - -1.3 164,642 - +0.7 164,642 - -0.6 164,708 + -0.1 164,708 + +0.7 164,708 + -1.3 164,709 - -0.3 164,709 - +0.1 164,709 - -0.1 164,709 - -1.1 164,711 + +0.2 164,711 + -0.8 164,712 - -1.2 164,727 - EX31_RS13635 0.11 +0.6 164,782 + EX31_RS13635 0.18 -0.2 164,782 + EX31_RS13635 0.18 -0.2 164,782 + EX31_RS13635 0.18 -1.0 164,782 + EX31_RS13635 0.18 -0.5 164,782 + EX31_RS13635 0.18 -0.2 164,783 - EX31_RS13635 0.18 -0.4 164,822 + EX31_RS13635 0.23 -0.2 164,822 + EX31_RS13635 0.23 +0.1 164,822 + EX31_RS13635 0.23 -0.2 164,822 + EX31_RS13635 0.23 +0.6 164,822 + EX31_RS13635 0.23 +0.4 164,822 + EX31_RS13635 0.23 +1.0 164,822 + EX31_RS13635 0.23 -0.2 164,822 + EX31_RS13635 0.23 -0.5 164,822 + EX31_RS13635 0.23 -0.1 164,823 - EX31_RS13635 0.23 -0.1 164,823 - EX31_RS13635 0.23 -0.8 164,826 + EX31_RS13635 0.24 -0.1 164,827 - EX31_RS13635 0.24 +0.4 164,932 - EX31_RS13635 0.38 -0.4 164,932 - EX31_RS13635 0.38 -2.7 165,143 + EX31_RS13635 0.65 +0.6 165,191 + EX31_RS13635 0.72 +0.4 165,191 + EX31_RS13635 0.72 +0.9 165,191 + EX31_RS13635 0.72 +0.6 165,191 + EX31_RS13635 0.72 +0.6 165,191 + EX31_RS13635 0.72 +3.1 165,191 + EX31_RS13635 0.72 +0.4 165,191 + EX31_RS13635 0.72 +1.7 165,192 - EX31_RS13635 0.72 +0.2 165,192 - EX31_RS13635 0.72 -0.8 165,192 - EX31_RS13635 0.72 -0.7 165,192 - EX31_RS13635 0.72 +0.0 165,192 - EX31_RS13635 0.72 -0.9 165,192 - EX31_RS13635 0.72 -0.3 165,192 - EX31_RS13635 0.72 +0.0 165,234 - EX31_RS13635 0.77 -0.4 165,234 - EX31_RS13635 0.77 -0.7 165,250 + EX31_RS13635 0.79 +0.4 165,250 + EX31_RS13635 0.79 +1.1 165,250 + EX31_RS13635 0.79 +0.6 165,250 + EX31_RS13635 0.79 +0.1 165,250 + EX31_RS13635 0.79 +0.7 165,250 + EX31_RS13635 0.79 +0.8 165,250 + EX31_RS13635 0.79 -0.3 165,250 + EX31_RS13635 0.79 -0.5 165,251 - EX31_RS13635 0.79 +1.2 165,251 - EX31_RS13635 0.79 -0.7 165,388 + -0.3 165,388 + +0.2 165,389 - -0.6 165,389 - +0.3 165,445 + EX31_RS13640 0.14 +0.8 165,445 + EX31_RS13640 0.14 +0.3 165,445 + EX31_RS13640 0.14 +0.4 165,445 + EX31_RS13640 0.14 +0.1 165,446 - EX31_RS13640 0.14 +1.9 165,446 - EX31_RS13640 0.14 +0.6 165,669 + EX31_RS13640 0.80 +0.1 165,692 + EX31_RS13640 0.87 +0.5 165,692 + EX31_RS13640 0.87 +0.0 165,697 + EX31_RS13640 0.88 -0.2 165,747 - -0.2 165,751 + -0.2 165,781 + +0.4 165,781 + +0.4 165,781 + +0.6 165,781 + -0.6 165,781 + +0.1 165,781 + -0.2 165,781 + +0.6 165,786 + +0.2 165,787 - +0.6 165,787 - +0.3 165,823 + +0.1 165,823 + +0.3 165,823 + +0.1 165,823 + +0.1 165,824 - +0.4 165,824 - -0.4 165,824 - -1.0 165,858 - -1.3 165,858 - -0.4 165,860 + -0.3 165,863 + -0.2 165,867 + -0.5 165,876 + -0.2 165,879 + -0.5 165,879 + +0.6 165,879 + -0.1 165,890 + +0.0 165,890 + +0.4 166,044 + EX31_RS13645 0.26 +0.8 166,044 + EX31_RS13645 0.26 +1.0 166,281 + EX31_RS13645 0.71 +0.2 166,281 + EX31_RS13645 0.71 +0.7 166,292 + EX31_RS13645 0.73 +1.9 166,308 + EX31_RS13645 0.76 +1.1 166,308 + EX31_RS13645 0.76 +1.1 166,308 + EX31_RS13645 0.76 +1.3 166,308 + EX31_RS13645 0.76 +0.9 166,308 + EX31_RS13645 0.76 -0.4 166,308 + EX31_RS13645 0.76 +0.4 166,308 + EX31_RS13645 0.76 +1.3 166,308 + EX31_RS13645 0.76 +1.0 166,308 + EX31_RS13645 0.76 +0.0 166,308 + EX31_RS13645 0.76 +1.5 166,308 + EX31_RS13645 0.76 +1.4 166,308 + EX31_RS13645 0.76 +1.1 166,308 + EX31_RS13645 0.76 -0.1 166,308 + EX31_RS13645 0.76 +0.1 166,308 + EX31_RS13645 0.76 +0.9 166,308 + EX31_RS13645 0.76 +0.8 166,337 + EX31_RS13645 0.82 +1.1 166,337 + EX31_RS13645 0.82 +1.3 166,361 + EX31_RS13645 0.86 +0.8 166,385 + -1.5 166,385 + -0.1
Or see this region's nucleotide sequence