Strain Fitness in Rahnella sp. WP5 around EX31_RS12740

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS12730 and EX31_RS12735 overlap by 11 nucleotidesEX31_RS12735 and EX31_RS12740 are separated by 9 nucleotidesEX31_RS12740 and EX31_RS12745 are separated by 99 nucleotides EX31_RS12730: EX31_RS12730 - glycoside hydrolase family 65 protein, at 218,334 to 220,580 _RS12730 EX31_RS12735: EX31_RS12735 - beta-phosphoglucomutase, at 220,570 to 221,253 _RS12735 EX31_RS12740: EX31_RS12740 - sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC, at 221,263 to 222,351 _RS12740 EX31_RS12745: EX31_RS12745 - OmpG family monomeric porin, at 222,451 to 223,461 _RS12745 Position (kb) 221 222 223Strain fitness (log2 ratio) -3 -2 -1 0 1at 220.295 kb on + strand, within EX31_RS12730at 220.295 kb on + strand, within EX31_RS12730at 220.296 kb on - strand, within EX31_RS12730at 220.415 kb on - strandat 220.702 kb on - strand, within EX31_RS12735at 220.779 kb on + strand, within EX31_RS12735at 220.779 kb on + strand, within EX31_RS12735at 220.825 kb on + strand, within EX31_RS12735at 220.826 kb on - strand, within EX31_RS12735at 220.826 kb on - strand, within EX31_RS12735at 220.836 kb on - strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.890 kb on + strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.891 kb on - strand, within EX31_RS12735at 220.987 kb on + strand, within EX31_RS12735at 220.987 kb on + strand, within EX31_RS12735at 220.987 kb on + strand, within EX31_RS12735at 220.988 kb on - strand, within EX31_RS12735at 221.120 kb on + strand, within EX31_RS12735at 221.120 kb on + strand, within EX31_RS12735at 221.120 kb on + strand, within EX31_RS12735at 221.121 kb on - strand, within EX31_RS12735at 221.121 kb on - strand, within EX31_RS12735at 221.121 kb on - strand, within EX31_RS12735at 221.121 kb on - strand, within EX31_RS12735at 221.394 kb on + strand, within EX31_RS12740at 221.395 kb on - strand, within EX31_RS12740at 221.406 kb on + strand, within EX31_RS12740at 221.407 kb on - strand, within EX31_RS12740at 221.407 kb on - strand, within EX31_RS12740at 221.495 kb on + strand, within EX31_RS12740at 221.495 kb on + strand, within EX31_RS12740at 221.496 kb on - strand, within EX31_RS12740at 221.504 kb on + strand, within EX31_RS12740at 221.505 kb on - strand, within EX31_RS12740at 221.505 kb on - strand, within EX31_RS12740at 221.505 kb on - strand, within EX31_RS12740at 221.505 kb on - strand, within EX31_RS12740at 221.515 kb on + strand, within EX31_RS12740at 221.515 kb on + strand, within EX31_RS12740at 221.515 kb on + strand, within EX31_RS12740at 221.516 kb on - strand, within EX31_RS12740at 221.516 kb on - strand, within EX31_RS12740at 221.516 kb on - strand, within EX31_RS12740at 221.516 kb on - strand, within EX31_RS12740at 221.516 kb on - strand, within EX31_RS12740at 221.516 kb on - strand, within EX31_RS12740at 221.532 kb on + strand, within EX31_RS12740at 221.532 kb on + strand, within EX31_RS12740at 221.532 kb on + strand, within EX31_RS12740at 221.532 kb on + strand, within EX31_RS12740at 221.532 kb on + strand, within EX31_RS12740at 221.533 kb on - strand, within EX31_RS12740at 221.543 kb on - strand, within EX31_RS12740at 221.543 kb on - strand, within EX31_RS12740at 221.612 kb on - strand, within EX31_RS12740at 221.612 kb on - strand, within EX31_RS12740at 221.612 kb on - strand, within EX31_RS12740at 221.641 kb on + strand, within EX31_RS12740at 221.641 kb on + strand, within EX31_RS12740at 221.642 kb on - strand, within EX31_RS12740at 221.642 kb on - strand, within EX31_RS12740at 221.808 kb on + strand, within EX31_RS12740at 221.817 kb on + strand, within EX31_RS12740at 221.830 kb on + strand, within EX31_RS12740at 221.830 kb on + strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.831 kb on - strand, within EX31_RS12740at 221.920 kb on - strand, within EX31_RS12740at 221.920 kb on - strand, within EX31_RS12740at 221.929 kb on + strand, within EX31_RS12740at 221.929 kb on + strand, within EX31_RS12740at 221.929 kb on + strand, within EX31_RS12740at 221.929 kb on + strand, within EX31_RS12740at 221.929 kb on + strand, within EX31_RS12740at 221.930 kb on - strand, within EX31_RS12740at 221.930 kb on - strand, within EX31_RS12740at 221.930 kb on - strand, within EX31_RS12740at 221.930 kb on - strand, within EX31_RS12740at 221.930 kb on - strand, within EX31_RS12740at 221.930 kb on - strand, within EX31_RS12740at 221.946 kb on + strand, within EX31_RS12740at 221.946 kb on + strand, within EX31_RS12740at 221.947 kb on - strand, within EX31_RS12740at 221.947 kb on - strand, within EX31_RS12740at 221.947 kb on - strand, within EX31_RS12740at 221.965 kb on - strand, within EX31_RS12740at 221.965 kb on - strand, within EX31_RS12740at 222.036 kb on + strand, within EX31_RS12740at 222.090 kb on + strand, within EX31_RS12740at 222.090 kb on + strand, within EX31_RS12740at 222.090 kb on + strand, within EX31_RS12740at 222.090 kb on + strand, within EX31_RS12740at 222.091 kb on - strand, within EX31_RS12740at 222.168 kb on + strand, within EX31_RS12740at 222.198 kb on + strand, within EX31_RS12740at 222.198 kb on + strand, within EX31_RS12740at 222.198 kb on + strand, within EX31_RS12740at 222.199 kb on - strand, within EX31_RS12740at 222.199 kb on - strand, within EX31_RS12740at 222.199 kb on - strand, within EX31_RS12740at 222.199 kb on - strand, within EX31_RS12740at 222.205 kb on + strand, within EX31_RS12740at 222.206 kb on - strand, within EX31_RS12740at 222.206 kb on - strand, within EX31_RS12740at 222.206 kb on - strand, within EX31_RS12740at 222.206 kb on - strand, within EX31_RS12740at 222.275 kb on + strandat 222.372 kb on + strandat 222.375 kb on - strandat 222.413 kb on - strandat 222.430 kb on - strandat 222.476 kb on + strandat 222.527 kb on + strandat 222.546 kb on + strandat 222.546 kb on + strandat 222.547 kb on - strandat 222.663 kb on + strand, within EX31_RS12745at 222.676 kb on + strand, within EX31_RS12745at 222.677 kb on - strand, within EX31_RS12745at 222.689 kb on + strand, within EX31_RS12745at 222.689 kb on + strand, within EX31_RS12745at 222.690 kb on - strand, within EX31_RS12745at 222.690 kb on - strand, within EX31_RS12745at 222.690 kb on - strand, within EX31_RS12745at 222.697 kb on - strand, within EX31_RS12745at 222.724 kb on + strand, within EX31_RS12745at 222.725 kb on - strand, within EX31_RS12745at 222.790 kb on - strand, within EX31_RS12745at 222.872 kb on - strand, within EX31_RS12745at 222.884 kb on - strand, within EX31_RS12745at 222.885 kb on + strand, within EX31_RS12745at 222.917 kb on - strand, within EX31_RS12745at 222.919 kb on - strand, within EX31_RS12745at 222.933 kb on + strand, within EX31_RS12745at 222.933 kb on + strand, within EX31_RS12745at 222.981 kb on + strand, within EX31_RS12745at 223.001 kb on - strand, within EX31_RS12745at 223.003 kb on - strand, within EX31_RS12745at 223.072 kb on + strand, within EX31_RS12745at 223.115 kb on + strand, within EX31_RS12745at 223.176 kb on + strand, within EX31_RS12745at 223.176 kb on + strand, within EX31_RS12745at 223.181 kb on - strand, within EX31_RS12745at 223.234 kb on + strand, within EX31_RS12745at 223.235 kb on - strand, within EX31_RS12745at 223.258 kb on + strand, within EX31_RS12745at 223.258 kb on + strand, within EX31_RS12745at 223.258 kb on + strand, within EX31_RS12745at 223.258 kb on + strand, within EX31_RS12745at 223.259 kb on - strand, within EX31_RS12745at 223.259 kb on - strand, within EX31_RS12745at 223.259 kb on - strand, within EX31_RS12745at 223.259 kb on - strand, within EX31_RS12745at 223.259 kb on - strand, within EX31_RS12745at 223.259 kb on - strand, within EX31_RS12745at 223.262 kb on - strand, within EX31_RS12745at 223.264 kb on + strand, within EX31_RS12745at 223.264 kb on + strand, within EX31_RS12745at 223.264 kb on + strand, within EX31_RS12745at 223.264 kb on + strand, within EX31_RS12745at 223.264 kb on + strand, within EX31_RS12745at 223.264 kb on + strand, within EX31_RS12745at 223.265 kb on - strand, within EX31_RS12745at 223.265 kb on - strand, within EX31_RS12745at 223.265 kb on - strand, within EX31_RS12745at 223.265 kb on - strand, within EX31_RS12745at 223.265 kb on - strand, within EX31_RS12745at 223.320 kb on - strand, within EX31_RS12745

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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220,295 + EX31_RS12730 0.87 +0.1
220,295 + EX31_RS12730 0.87 +0.0
220,296 - EX31_RS12730 0.87 +0.3
220,415 - -0.3
220,702 - EX31_RS12735 0.19 +0.5
220,779 + EX31_RS12735 0.31 +1.4
220,779 + EX31_RS12735 0.31 -0.3
220,825 + EX31_RS12735 0.37 -0.2
220,826 - EX31_RS12735 0.37 +0.3
220,826 - EX31_RS12735 0.37 -0.1
220,836 - EX31_RS12735 0.39 -0.8
220,890 + EX31_RS12735 0.47 -0.5
220,890 + EX31_RS12735 0.47 -0.4
220,890 + EX31_RS12735 0.47 -0.5
220,890 + EX31_RS12735 0.47 +0.0
220,890 + EX31_RS12735 0.47 +0.4
220,890 + EX31_RS12735 0.47 -0.1
220,890 + EX31_RS12735 0.47 +0.5
220,890 + EX31_RS12735 0.47 -0.4
220,890 + EX31_RS12735 0.47 +0.2
220,890 + EX31_RS12735 0.47 -0.2
220,890 + EX31_RS12735 0.47 +0.1
220,890 + EX31_RS12735 0.47 -0.3
220,890 + EX31_RS12735 0.47 +0.2
220,891 - EX31_RS12735 0.47 -0.2
220,891 - EX31_RS12735 0.47 -0.7
220,891 - EX31_RS12735 0.47 +0.7
220,891 - EX31_RS12735 0.47 +0.3
220,891 - EX31_RS12735 0.47 -0.4
220,891 - EX31_RS12735 0.47 -0.4
220,891 - EX31_RS12735 0.47 -0.1
220,891 - EX31_RS12735 0.47 +0.2
220,891 - EX31_RS12735 0.47 +0.6
220,891 - EX31_RS12735 0.47 -0.4
220,987 + EX31_RS12735 0.61 +0.0
220,987 + EX31_RS12735 0.61 +0.7
220,987 + EX31_RS12735 0.61 -0.5
220,988 - EX31_RS12735 0.61 +0.3
221,120 + EX31_RS12735 0.80 +1.1
221,120 + EX31_RS12735 0.80 +0.4
221,120 + EX31_RS12735 0.80 +1.2
221,121 - EX31_RS12735 0.81 -0.2
221,121 - EX31_RS12735 0.81 -0.5
221,121 - EX31_RS12735 0.81 +0.7
221,121 - EX31_RS12735 0.81 -0.2
221,394 + EX31_RS12740 0.12 -0.2
221,395 - EX31_RS12740 0.12 +0.3
221,406 + EX31_RS12740 0.13 -0.4
221,407 - EX31_RS12740 0.13 -0.2
221,407 - EX31_RS12740 0.13 +0.1
221,495 + EX31_RS12740 0.21 +0.3
221,495 + EX31_RS12740 0.21 -0.4
221,496 - EX31_RS12740 0.21 -0.7
221,504 + EX31_RS12740 0.22 +0.2
221,505 - EX31_RS12740 0.22 +0.1
221,505 - EX31_RS12740 0.22 +0.8
221,505 - EX31_RS12740 0.22 -0.7
221,505 - EX31_RS12740 0.22 -1.6
221,515 + EX31_RS12740 0.23 -0.4
221,515 + EX31_RS12740 0.23 -0.5
221,515 + EX31_RS12740 0.23 +0.0
221,516 - EX31_RS12740 0.23 -0.2
221,516 - EX31_RS12740 0.23 -0.6
221,516 - EX31_RS12740 0.23 +0.6
221,516 - EX31_RS12740 0.23 +0.0
221,516 - EX31_RS12740 0.23 +0.9
221,516 - EX31_RS12740 0.23 -0.2
221,532 + EX31_RS12740 0.25 -0.2
221,532 + EX31_RS12740 0.25 -0.1
221,532 + EX31_RS12740 0.25 +0.4
221,532 + EX31_RS12740 0.25 -0.1
221,532 + EX31_RS12740 0.25 -0.4
221,533 - EX31_RS12740 0.25 -0.5
221,543 - EX31_RS12740 0.26 -0.0
221,543 - EX31_RS12740 0.26 -0.6
221,612 - EX31_RS12740 0.32 -0.1
221,612 - EX31_RS12740 0.32 -0.2
221,612 - EX31_RS12740 0.32 -0.2
221,641 + EX31_RS12740 0.35 -0.5
221,641 + EX31_RS12740 0.35 -0.2
221,642 - EX31_RS12740 0.35 +0.0
221,642 - EX31_RS12740 0.35 -0.6
221,808 + EX31_RS12740 0.50 +0.1
221,817 + EX31_RS12740 0.51 +0.2
221,830 + EX31_RS12740 0.52 +0.2
221,830 + EX31_RS12740 0.52 -1.3
221,831 - EX31_RS12740 0.52 -0.7
221,831 - EX31_RS12740 0.52 +0.4
221,831 - EX31_RS12740 0.52 +0.4
221,831 - EX31_RS12740 0.52 -1.1
221,831 - EX31_RS12740 0.52 -3.1
221,831 - EX31_RS12740 0.52 -0.2
221,831 - EX31_RS12740 0.52 -0.5
221,831 - EX31_RS12740 0.52 -0.2
221,831 - EX31_RS12740 0.52 -0.5
221,831 - EX31_RS12740 0.52 -1.3
221,831 - EX31_RS12740 0.52 -0.1
221,920 - EX31_RS12740 0.60 -0.1
221,920 - EX31_RS12740 0.60 -0.6
221,929 + EX31_RS12740 0.61 -0.3
221,929 + EX31_RS12740 0.61 +0.4
221,929 + EX31_RS12740 0.61 -0.4
221,929 + EX31_RS12740 0.61 -0.6
221,929 + EX31_RS12740 0.61 -1.1
221,930 - EX31_RS12740 0.61 -0.3
221,930 - EX31_RS12740 0.61 -0.6
221,930 - EX31_RS12740 0.61 -0.6
221,930 - EX31_RS12740 0.61 -0.0
221,930 - EX31_RS12740 0.61 +0.1
221,930 - EX31_RS12740 0.61 +0.1
221,946 + EX31_RS12740 0.63 +0.4
221,946 + EX31_RS12740 0.63 -0.6
221,947 - EX31_RS12740 0.63 +0.3
221,947 - EX31_RS12740 0.63 +0.7
221,947 - EX31_RS12740 0.63 -0.1
221,965 - EX31_RS12740 0.64 +1.0
221,965 - EX31_RS12740 0.64 -0.1
222,036 + EX31_RS12740 0.71 -0.7
222,090 + EX31_RS12740 0.76 -0.4
222,090 + EX31_RS12740 0.76 -0.2
222,090 + EX31_RS12740 0.76 -0.5
222,090 + EX31_RS12740 0.76 -0.7
222,091 - EX31_RS12740 0.76 +0.2
222,168 + EX31_RS12740 0.83 -0.5
222,198 + EX31_RS12740 0.86 +0.8
222,198 + EX31_RS12740 0.86 -0.6
222,198 + EX31_RS12740 0.86 +0.0
222,199 - EX31_RS12740 0.86 -0.3
222,199 - EX31_RS12740 0.86 +0.8
222,199 - EX31_RS12740 0.86 -0.3
222,199 - EX31_RS12740 0.86 -0.5
222,205 + EX31_RS12740 0.87 -0.7
222,206 - EX31_RS12740 0.87 -1.4
222,206 - EX31_RS12740 0.87 -0.0
222,206 - EX31_RS12740 0.87 -0.3
222,206 - EX31_RS12740 0.87 -0.3
222,275 + -0.3
222,372 + -0.8
222,375 - -0.6
222,413 - +0.4
222,430 - -0.3
222,476 + -0.1
222,527 + +0.4
222,546 + -0.4
222,546 + +0.3
222,547 - -0.0
222,663 + EX31_RS12745 0.21 -0.7
222,676 + EX31_RS12745 0.22 -0.4
222,677 - EX31_RS12745 0.22 -0.9
222,689 + EX31_RS12745 0.24 -0.9
222,689 + EX31_RS12745 0.24 -1.6
222,690 - EX31_RS12745 0.24 +0.6
222,690 - EX31_RS12745 0.24 -0.3
222,690 - EX31_RS12745 0.24 +1.5
222,697 - EX31_RS12745 0.24 -1.7
222,724 + EX31_RS12745 0.27 -0.3
222,725 - EX31_RS12745 0.27 +0.7
222,790 - EX31_RS12745 0.34 -0.9
222,872 - EX31_RS12745 0.42 -1.0
222,884 - EX31_RS12745 0.43 +1.2
222,885 + EX31_RS12745 0.43 +0.2
222,917 - EX31_RS12745 0.46 +0.0
222,919 - EX31_RS12745 0.46 -1.1
222,933 + EX31_RS12745 0.48 -0.2
222,933 + EX31_RS12745 0.48 -0.5
222,981 + EX31_RS12745 0.52 -0.2
223,001 - EX31_RS12745 0.54 +1.1
223,003 - EX31_RS12745 0.55 +0.3
223,072 + EX31_RS12745 0.61 -0.0
223,115 + EX31_RS12745 0.66 +0.3
223,176 + EX31_RS12745 0.72 -0.0
223,176 + EX31_RS12745 0.72 -0.1
223,181 - EX31_RS12745 0.72 +0.0
223,234 + EX31_RS12745 0.77 +0.8
223,235 - EX31_RS12745 0.78 -0.2
223,258 + EX31_RS12745 0.80 +0.2
223,258 + EX31_RS12745 0.80 +0.1
223,258 + EX31_RS12745 0.80 -0.3
223,258 + EX31_RS12745 0.80 -0.1
223,259 - EX31_RS12745 0.80 -1.3
223,259 - EX31_RS12745 0.80 -0.0
223,259 - EX31_RS12745 0.80 -0.4
223,259 - EX31_RS12745 0.80 +0.0
223,259 - EX31_RS12745 0.80 -0.5
223,259 - EX31_RS12745 0.80 -0.8
223,262 - EX31_RS12745 0.80 -0.7
223,264 + EX31_RS12745 0.80 -0.1
223,264 + EX31_RS12745 0.80 -0.6
223,264 + EX31_RS12745 0.80 -1.5
223,264 + EX31_RS12745 0.80 -0.2
223,264 + EX31_RS12745 0.80 +0.5
223,264 + EX31_RS12745 0.80 -0.6
223,265 - EX31_RS12745 0.81 -0.6
223,265 - EX31_RS12745 0.81 +0.4
223,265 - EX31_RS12745 0.81 -0.9
223,265 - EX31_RS12745 0.81 -0.4
223,265 - EX31_RS12745 0.81 -0.6
223,320 - EX31_RS12745 0.86 -2.0

Or see this region's nucleotide sequence