Strain Fitness in Rahnella sp. WP5 around EX31_RS09295

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09285 and EX31_RS09290 are separated by 14 nucleotidesEX31_RS09290 and EX31_RS09295 are separated by 266 nucleotidesEX31_RS09295 and EX31_RS09300 are separated by 168 nucleotidesEX31_RS09300 and EX31_RS09305 are separated by 96 nucleotides EX31_RS09285: EX31_RS09285 - hypothetical protein, at 58,624 to 58,929 _RS09285 EX31_RS09290: EX31_RS09290 - hypothetical protein, at 58,944 to 59,468 _RS09290 EX31_RS09295: EX31_RS09295 - D-amino-acid transaminase, at 59,735 to 60,598 _RS09295 EX31_RS09300: EX31_RS09300 - hypothetical protein, at 60,767 to 61,006 _RS09300 EX31_RS09305: EX31_RS09305 - respiratory nitrate reductase subunit gamma, at 61,103 to 61,783 _RS09305 Position (kb) 59 60 61Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 58.820 kb on - strand, within EX31_RS09285at 58.987 kb on + strandat 59.042 kb on - strand, within EX31_RS09290at 59.042 kb on - strand, within EX31_RS09290at 59.099 kb on + strand, within EX31_RS09290at 59.142 kb on - strand, within EX31_RS09290at 59.376 kb on - strand, within EX31_RS09290at 59.393 kb on - strand, within EX31_RS09290at 59.432 kb on + strandat 59.432 kb on + strandat 59.505 kb on + strandat 59.606 kb on - strandat 59.732 kb on + strandat 59.733 kb on - strandat 59.737 kb on - strandat 59.769 kb on + strandat 59.932 kb on + strand, within EX31_RS09295at 60.029 kb on + strand, within EX31_RS09295at 60.030 kb on - strand, within EX31_RS09295at 60.030 kb on - strand, within EX31_RS09295at 60.083 kb on + strand, within EX31_RS09295at 60.101 kb on - strand, within EX31_RS09295at 60.115 kb on - strand, within EX31_RS09295at 60.115 kb on - strand, within EX31_RS09295at 60.227 kb on + strand, within EX31_RS09295at 60.228 kb on - strand, within EX31_RS09295at 60.228 kb on - strand, within EX31_RS09295at 60.330 kb on + strand, within EX31_RS09295at 60.330 kb on + strand, within EX31_RS09295at 60.332 kb on + strand, within EX31_RS09295at 60.332 kb on + strand, within EX31_RS09295at 60.332 kb on + strand, within EX31_RS09295at 60.332 kb on + strand, within EX31_RS09295at 60.332 kb on + strand, within EX31_RS09295at 60.333 kb on - strand, within EX31_RS09295at 60.501 kb on + strand, within EX31_RS09295at 60.501 kb on + strand, within EX31_RS09295at 60.583 kb on - strandat 60.583 kb on - strandat 60.584 kb on + strandat 60.585 kb on - strandat 60.602 kb on - strandat 60.633 kb on + strandat 60.636 kb on + strandat 60.636 kb on + strandat 60.637 kb on - strandat 60.643 kb on - strandat 60.803 kb on + strand, within EX31_RS09300at 60.985 kb on + strandat 60.985 kb on + strandat 60.986 kb on - strandat 61.048 kb on - strandat 61.067 kb on - strandat 61.067 kb on - strandat 61.128 kb on + strandat 61.143 kb on + strandat 61.143 kb on + strandat 61.331 kb on - strand, within EX31_RS09305at 61.354 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.551 kb on + strand, within EX31_RS09305at 61.552 kb on - strand, within EX31_RS09305at 61.552 kb on - strand, within EX31_RS09305

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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58,820 - EX31_RS09285 0.64 -0.3
58,987 + -0.8
59,042 - EX31_RS09290 0.19 -0.2
59,042 - EX31_RS09290 0.19 +0.1
59,099 + EX31_RS09290 0.30 -0.5
59,142 - EX31_RS09290 0.38 -0.1
59,376 - EX31_RS09290 0.82 -0.3
59,393 - EX31_RS09290 0.86 -2.6
59,432 + +1.4
59,432 + +2.0
59,505 + -0.4
59,606 - -0.6
59,732 + +0.0
59,733 - -0.3
59,737 - -1.0
59,769 + +0.1
59,932 + EX31_RS09295 0.23 +0.6
60,029 + EX31_RS09295 0.34 -0.0
60,030 - EX31_RS09295 0.34 -0.4
60,030 - EX31_RS09295 0.34 -0.3
60,083 + EX31_RS09295 0.40 -0.2
60,101 - EX31_RS09295 0.42 +1.0
60,115 - EX31_RS09295 0.44 -1.9
60,115 - EX31_RS09295 0.44 +0.0
60,227 + EX31_RS09295 0.57 +0.1
60,228 - EX31_RS09295 0.57 -0.4
60,228 - EX31_RS09295 0.57 -0.2
60,330 + EX31_RS09295 0.69 -0.3
60,330 + EX31_RS09295 0.69 -0.4
60,332 + EX31_RS09295 0.69 -1.0
60,332 + EX31_RS09295 0.69 -1.5
60,332 + EX31_RS09295 0.69 -0.7
60,332 + EX31_RS09295 0.69 -3.0
60,332 + EX31_RS09295 0.69 -1.2
60,333 - EX31_RS09295 0.69 +0.4
60,501 + EX31_RS09295 0.89 -0.9
60,501 + EX31_RS09295 0.89 -2.8
60,583 - +0.4
60,583 - -0.9
60,584 + -0.3
60,585 - +1.1
60,602 - +0.8
60,633 + +0.1
60,636 + +0.4
60,636 + -0.4
60,637 - -0.3
60,643 - +0.3
60,803 + EX31_RS09300 0.15 -0.2
60,985 + -0.5
60,985 + +0.6
60,986 - -0.7
61,048 - -0.2
61,067 - -1.1
61,067 - -0.4
61,128 + +0.7
61,143 + -0.4
61,143 + -0.8
61,331 - EX31_RS09305 0.33 -0.2
61,354 + EX31_RS09305 0.37 -0.5
61,551 + EX31_RS09305 0.66 +0.1
61,551 + EX31_RS09305 0.66 +0.1
61,551 + EX31_RS09305 0.66 -1.0
61,551 + EX31_RS09305 0.66 +1.3
61,551 + EX31_RS09305 0.66 -2.4
61,552 - EX31_RS09305 0.66 +0.4
61,552 - EX31_RS09305 0.66 -0.0

Or see this region's nucleotide sequence