Strain Fitness in Rahnella sp. WP5 around EX31_RS09025

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09020 and EX31_RS09025 are separated by 9 nucleotidesEX31_RS09025 and EX31_RS09030 are separated by 46 nucleotides EX31_RS09020: EX31_RS09020 - fimbrial protein, at 316,434 to 317,405 _RS09020 EX31_RS09025: EX31_RS09025 - molecular chaperone, at 317,415 to 318,152 _RS09025 EX31_RS09030: EX31_RS09030 - fimbria/pilus outer membrane usher protein, at 318,199 to 320,700 _RS09030 Position (kb) 317 318 319Strain fitness (log2 ratio) -3 -2 -1 0 1at 316.425 kb on - strandat 316.438 kb on + strandat 316.438 kb on + strandat 316.438 kb on + strandat 316.438 kb on + strandat 316.439 kb on - strandat 316.439 kb on - strandat 316.441 kb on + strandat 316.441 kb on + strandat 316.441 kb on + strandat 316.441 kb on + strandat 316.441 kb on + strandat 316.441 kb on + strandat 316.442 kb on - strandat 316.442 kb on - strandat 316.570 kb on + strand, within EX31_RS09020at 316.571 kb on - strand, within EX31_RS09020at 316.605 kb on - strand, within EX31_RS09020at 316.605 kb on - strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.606 kb on + strand, within EX31_RS09020at 316.711 kb on - strand, within EX31_RS09020at 316.716 kb on + strand, within EX31_RS09020at 316.770 kb on - strand, within EX31_RS09020at 316.770 kb on - strand, within EX31_RS09020at 316.770 kb on - strand, within EX31_RS09020at 316.870 kb on + strand, within EX31_RS09020at 316.870 kb on + strand, within EX31_RS09020at 316.870 kb on + strand, within EX31_RS09020at 316.870 kb on + strand, within EX31_RS09020at 316.901 kb on + strand, within EX31_RS09020at 316.934 kb on + strand, within EX31_RS09020at 316.991 kb on + strand, within EX31_RS09020at 316.992 kb on - strand, within EX31_RS09020at 316.992 kb on - strand, within EX31_RS09020at 316.993 kb on + strand, within EX31_RS09020at 316.993 kb on + strand, within EX31_RS09020at 316.993 kb on + strand, within EX31_RS09020at 316.994 kb on - strand, within EX31_RS09020at 316.994 kb on - strand, within EX31_RS09020at 317.046 kb on - strand, within EX31_RS09020at 317.054 kb on + strand, within EX31_RS09020at 317.095 kb on + strand, within EX31_RS09020at 317.096 kb on - strand, within EX31_RS09020at 317.096 kb on - strand, within EX31_RS09020at 317.096 kb on - strand, within EX31_RS09020at 317.149 kb on + strand, within EX31_RS09020at 317.149 kb on + strand, within EX31_RS09020at 317.149 kb on + strand, within EX31_RS09020at 317.194 kb on + strand, within EX31_RS09020at 317.195 kb on - strand, within EX31_RS09020at 317.297 kb on + strand, within EX31_RS09020at 317.298 kb on - strand, within EX31_RS09020at 317.298 kb on - strand, within EX31_RS09020at 317.367 kb on + strandat 317.367 kb on + strandat 317.367 kb on + strandat 317.368 kb on - strandat 317.467 kb on + strandat 317.468 kb on - strandat 317.492 kb on - strand, within EX31_RS09025at 317.503 kb on + strand, within EX31_RS09025at 317.503 kb on + strand, within EX31_RS09025at 317.504 kb on - strand, within EX31_RS09025at 317.504 kb on - strand, within EX31_RS09025at 317.504 kb on - strand, within EX31_RS09025at 317.515 kb on + strand, within EX31_RS09025at 317.515 kb on + strand, within EX31_RS09025at 317.515 kb on + strand, within EX31_RS09025at 317.516 kb on - strand, within EX31_RS09025at 317.516 kb on - strand, within EX31_RS09025at 317.516 kb on - strand, within EX31_RS09025at 317.516 kb on - strand, within EX31_RS09025at 317.516 kb on - strand, within EX31_RS09025at 317.530 kb on + strand, within EX31_RS09025at 317.530 kb on + strand, within EX31_RS09025at 317.530 kb on + strand, within EX31_RS09025at 317.531 kb on - strand, within EX31_RS09025at 317.595 kb on - strand, within EX31_RS09025at 317.595 kb on - strand, within EX31_RS09025at 317.595 kb on - strand, within EX31_RS09025at 317.633 kb on + strand, within EX31_RS09025at 317.633 kb on + strand, within EX31_RS09025at 317.633 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.635 kb on + strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.636 kb on - strand, within EX31_RS09025at 317.819 kb on + strand, within EX31_RS09025at 317.819 kb on + strand, within EX31_RS09025at 317.825 kb on - strand, within EX31_RS09025at 317.989 kb on + strand, within EX31_RS09025at 317.989 kb on + strand, within EX31_RS09025at 317.989 kb on + strand, within EX31_RS09025at 317.989 kb on + strand, within EX31_RS09025at 317.990 kb on - strand, within EX31_RS09025at 317.990 kb on - strand, within EX31_RS09025at 317.994 kb on + strand, within EX31_RS09025at 317.995 kb on - strand, within EX31_RS09025at 317.995 kb on - strand, within EX31_RS09025at 318.035 kb on + strand, within EX31_RS09025at 318.049 kb on + strand, within EX31_RS09025at 318.049 kb on + strand, within EX31_RS09025at 318.049 kb on + strand, within EX31_RS09025at 318.049 kb on + strand, within EX31_RS09025at 318.049 kb on + strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.050 kb on - strand, within EX31_RS09025at 318.095 kb on - strandat 318.117 kb on + strandat 318.117 kb on + strandat 318.118 kb on - strandat 318.118 kb on - strandat 318.159 kb on - strandat 318.197 kb on + strandat 318.201 kb on - strandat 318.217 kb on + strandat 318.218 kb on - strandat 318.218 kb on - strandat 318.218 kb on - strandat 318.218 kb on - strandat 318.230 kb on + strandat 318.230 kb on + strandat 318.230 kb on + strandat 318.230 kb on + strandat 318.230 kb on + strandat 318.230 kb on + strandat 318.230 kb on + strandat 318.231 kb on - strandat 318.231 kb on - strandat 318.231 kb on - strandat 318.231 kb on - strandat 318.231 kb on - strandat 318.231 kb on - strandat 318.311 kb on - strandat 318.323 kb on + strandat 318.323 kb on + strandat 318.421 kb on + strandat 318.421 kb on + strandat 318.422 kb on - strandat 318.422 kb on - strandat 318.422 kb on - strandat 318.424 kb on + strandat 318.472 kb on + strand, within EX31_RS09030at 318.513 kb on - strand, within EX31_RS09030at 318.513 kb on - strand, within EX31_RS09030at 318.537 kb on + strand, within EX31_RS09030at 318.537 kb on + strand, within EX31_RS09030at 318.538 kb on - strand, within EX31_RS09030at 318.538 kb on - strand, within EX31_RS09030at 318.569 kb on + strand, within EX31_RS09030at 318.658 kb on + strand, within EX31_RS09030at 318.658 kb on + strand, within EX31_RS09030at 318.659 kb on - strand, within EX31_RS09030at 318.759 kb on - strand, within EX31_RS09030at 318.765 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.810 kb on + strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.811 kb on - strand, within EX31_RS09030at 318.818 kb on + strand, within EX31_RS09030at 318.818 kb on + strand, within EX31_RS09030at 318.818 kb on + strand, within EX31_RS09030at 318.818 kb on + strand, within EX31_RS09030at 318.819 kb on - strand, within EX31_RS09030at 318.819 kb on - strand, within EX31_RS09030at 318.888 kb on + strand, within EX31_RS09030at 318.888 kb on + strand, within EX31_RS09030at 318.888 kb on + strand, within EX31_RS09030at 318.889 kb on - strand, within EX31_RS09030at 318.911 kb on + strand, within EX31_RS09030at 318.911 kb on + strand, within EX31_RS09030at 318.911 kb on + strand, within EX31_RS09030at 318.911 kb on + strand, within EX31_RS09030at 318.911 kb on + strand, within EX31_RS09030at 318.912 kb on - strand, within EX31_RS09030at 318.914 kb on + strand, within EX31_RS09030at 318.915 kb on - strand, within EX31_RS09030at 318.915 kb on - strand, within EX31_RS09030at 318.915 kb on - strand, within EX31_RS09030at 318.933 kb on - strand, within EX31_RS09030at 318.933 kb on - strand, within EX31_RS09030at 318.962 kb on + strand, within EX31_RS09030at 318.962 kb on + strand, within EX31_RS09030at 318.963 kb on - strand, within EX31_RS09030at 318.963 kb on - strand, within EX31_RS09030at 318.963 kb on - strand, within EX31_RS09030at 318.963 kb on - strand, within EX31_RS09030at 319.026 kb on + strand, within EX31_RS09030at 319.034 kb on + strand, within EX31_RS09030at 319.035 kb on - strand, within EX31_RS09030at 319.115 kb on + strand, within EX31_RS09030at 319.116 kb on - strand, within EX31_RS09030at 319.116 kb on - strand, within EX31_RS09030at 319.116 kb on - strand, within EX31_RS09030at 319.142 kb on + strand, within EX31_RS09030at 319.142 kb on + strand, within EX31_RS09030at 319.143 kb on - strand, within EX31_RS09030

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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316,425 - +0.2
316,438 + -1.7
316,438 + +0.6
316,438 + +0.6
316,438 + +0.8
316,439 - +0.3
316,439 - -0.6
316,441 + -0.0
316,441 + -1.6
316,441 + +0.0
316,441 + +0.2
316,441 + -0.2
316,441 + -0.0
316,442 - -0.1
316,442 - -1.0
316,570 + EX31_RS09020 0.14 +0.6
316,571 - EX31_RS09020 0.14 -0.6
316,605 - EX31_RS09020 0.18 -0.2
316,605 - EX31_RS09020 0.18 -0.7
316,606 + EX31_RS09020 0.18 +1.3
316,606 + EX31_RS09020 0.18 +0.3
316,606 + EX31_RS09020 0.18 +0.4
316,606 + EX31_RS09020 0.18 -1.1
316,606 + EX31_RS09020 0.18 +0.2
316,606 + EX31_RS09020 0.18 +0.4
316,606 + EX31_RS09020 0.18 +0.3
316,711 - EX31_RS09020 0.28 -1.0
316,716 + EX31_RS09020 0.29 -0.7
316,770 - EX31_RS09020 0.35 -1.2
316,770 - EX31_RS09020 0.35 -0.5
316,770 - EX31_RS09020 0.35 -0.4
316,870 + EX31_RS09020 0.45 +0.5
316,870 + EX31_RS09020 0.45 -1.1
316,870 + EX31_RS09020 0.45 +0.7
316,870 + EX31_RS09020 0.45 +0.2
316,901 + EX31_RS09020 0.48 +0.4
316,934 + EX31_RS09020 0.51 +0.5
316,991 + EX31_RS09020 0.57 -2.0
316,992 - EX31_RS09020 0.57 -0.7
316,992 - EX31_RS09020 0.57 -0.0
316,993 + EX31_RS09020 0.58 -0.6
316,993 + EX31_RS09020 0.58 +0.0
316,993 + EX31_RS09020 0.58 +0.9
316,994 - EX31_RS09020 0.58 +0.4
316,994 - EX31_RS09020 0.58 -0.9
317,046 - EX31_RS09020 0.63 -0.3
317,054 + EX31_RS09020 0.64 -0.1
317,095 + EX31_RS09020 0.68 -0.4
317,096 - EX31_RS09020 0.68 -0.1
317,096 - EX31_RS09020 0.68 -0.7
317,096 - EX31_RS09020 0.68 +0.7
317,149 + EX31_RS09020 0.74 -0.3
317,149 + EX31_RS09020 0.74 -0.1
317,149 + EX31_RS09020 0.74 +0.6
317,194 + EX31_RS09020 0.78 +0.7
317,195 - EX31_RS09020 0.78 +0.0
317,297 + EX31_RS09020 0.89 +0.0
317,298 - EX31_RS09020 0.89 +0.8
317,298 - EX31_RS09020 0.89 -0.1
317,367 + -0.2
317,367 + -0.0
317,367 + +0.1
317,368 - +0.2
317,467 + -0.4
317,468 - -0.5
317,492 - EX31_RS09025 0.10 -3.3
317,503 + EX31_RS09025 0.12 +0.1
317,503 + EX31_RS09025 0.12 +0.7
317,504 - EX31_RS09025 0.12 -0.3
317,504 - EX31_RS09025 0.12 -0.6
317,504 - EX31_RS09025 0.12 +0.0
317,515 + EX31_RS09025 0.14 +0.2
317,515 + EX31_RS09025 0.14 +0.2
317,515 + EX31_RS09025 0.14 +0.5
317,516 - EX31_RS09025 0.14 -1.7
317,516 - EX31_RS09025 0.14 -3.0
317,516 - EX31_RS09025 0.14 -2.2
317,516 - EX31_RS09025 0.14 -0.3
317,516 - EX31_RS09025 0.14 -0.7
317,530 + EX31_RS09025 0.16 -0.0
317,530 + EX31_RS09025 0.16 +1.3
317,530 + EX31_RS09025 0.16 -0.6
317,531 - EX31_RS09025 0.16 -0.1
317,595 - EX31_RS09025 0.24 -0.7
317,595 - EX31_RS09025 0.24 +0.4
317,595 - EX31_RS09025 0.24 -0.6
317,633 + EX31_RS09025 0.30 +0.0
317,633 + EX31_RS09025 0.30 -0.5
317,633 + EX31_RS09025 0.30 +0.3
317,635 + EX31_RS09025 0.30 +0.1
317,635 + EX31_RS09025 0.30 -0.2
317,635 + EX31_RS09025 0.30 +0.4
317,635 + EX31_RS09025 0.30 -0.4
317,635 + EX31_RS09025 0.30 +0.3
317,635 + EX31_RS09025 0.30 -0.0
317,635 + EX31_RS09025 0.30 +0.5
317,636 - EX31_RS09025 0.30 -0.1
317,636 - EX31_RS09025 0.30 -0.8
317,636 - EX31_RS09025 0.30 -0.1
317,636 - EX31_RS09025 0.30 -0.1
317,636 - EX31_RS09025 0.30 -0.9
317,636 - EX31_RS09025 0.30 +0.8
317,636 - EX31_RS09025 0.30 -0.5
317,819 + EX31_RS09025 0.55 +0.2
317,819 + EX31_RS09025 0.55 +0.3
317,825 - EX31_RS09025 0.56 +0.3
317,989 + EX31_RS09025 0.78 +0.3
317,989 + EX31_RS09025 0.78 -0.1
317,989 + EX31_RS09025 0.78 -0.4
317,989 + EX31_RS09025 0.78 +1.0
317,990 - EX31_RS09025 0.78 +0.4
317,990 - EX31_RS09025 0.78 +0.4
317,994 + EX31_RS09025 0.78 -0.7
317,995 - EX31_RS09025 0.79 +0.4
317,995 - EX31_RS09025 0.79 +0.0
318,035 + EX31_RS09025 0.84 -0.1
318,049 + EX31_RS09025 0.86 -0.4
318,049 + EX31_RS09025 0.86 +0.5
318,049 + EX31_RS09025 0.86 +0.6
318,049 + EX31_RS09025 0.86 +0.2
318,049 + EX31_RS09025 0.86 +1.0
318,050 - EX31_RS09025 0.86 -1.8
318,050 - EX31_RS09025 0.86 +1.5
318,050 - EX31_RS09025 0.86 -0.9
318,050 - EX31_RS09025 0.86 +1.0
318,050 - EX31_RS09025 0.86 +0.1
318,050 - EX31_RS09025 0.86 +0.6
318,050 - EX31_RS09025 0.86 +0.0
318,050 - EX31_RS09025 0.86 +0.1
318,095 - -0.1
318,117 + -0.5
318,117 + +0.2
318,118 - +0.1
318,118 - +1.0
318,159 - +0.4
318,197 + +0.1
318,201 - -0.8
318,217 + -1.1
318,218 - -1.3
318,218 - -1.1
318,218 - -0.4
318,218 - -1.2
318,230 + +0.6
318,230 + +0.3
318,230 + +0.7
318,230 + +0.2
318,230 + +0.2
318,230 + +0.3
318,230 + +0.9
318,231 - -2.0
318,231 - -0.2
318,231 - -0.8
318,231 - -2.0
318,231 - -1.6
318,231 - -1.3
318,311 - +0.2
318,323 + -0.3
318,323 + +0.2
318,421 + -0.7
318,421 + -0.6
318,422 - -0.8
318,422 - -2.4
318,422 - -1.5
318,424 + +0.2
318,472 + EX31_RS09030 0.11 -0.2
318,513 - EX31_RS09030 0.13 +0.3
318,513 - EX31_RS09030 0.13 -1.4
318,537 + EX31_RS09030 0.14 -0.5
318,537 + EX31_RS09030 0.14 -0.5
318,538 - EX31_RS09030 0.14 -0.8
318,538 - EX31_RS09030 0.14 +1.7
318,569 + EX31_RS09030 0.15 +0.1
318,658 + EX31_RS09030 0.18 -0.1
318,658 + EX31_RS09030 0.18 +0.1
318,659 - EX31_RS09030 0.18 +0.5
318,759 - EX31_RS09030 0.22 -1.0
318,765 + EX31_RS09030 0.23 +0.1
318,810 + EX31_RS09030 0.24 -1.4
318,810 + EX31_RS09030 0.24 +0.5
318,810 + EX31_RS09030 0.24 -0.2
318,810 + EX31_RS09030 0.24 +0.4
318,810 + EX31_RS09030 0.24 +0.3
318,810 + EX31_RS09030 0.24 +0.9
318,810 + EX31_RS09030 0.24 -0.1
318,810 + EX31_RS09030 0.24 -0.1
318,810 + EX31_RS09030 0.24 +1.0
318,810 + EX31_RS09030 0.24 -0.2
318,810 + EX31_RS09030 0.24 -0.0
318,810 + EX31_RS09030 0.24 +0.6
318,810 + EX31_RS09030 0.24 -0.6
318,811 - EX31_RS09030 0.24 -1.6
318,811 - EX31_RS09030 0.24 -1.9
318,811 - EX31_RS09030 0.24 -0.6
318,811 - EX31_RS09030 0.24 -2.8
318,811 - EX31_RS09030 0.24 -0.9
318,811 - EX31_RS09030 0.24 -1.4
318,811 - EX31_RS09030 0.24 -0.9
318,811 - EX31_RS09030 0.24 -0.5
318,811 - EX31_RS09030 0.24 -0.7
318,811 - EX31_RS09030 0.24 -1.0
318,811 - EX31_RS09030 0.24 -0.9
318,811 - EX31_RS09030 0.24 -0.0
318,811 - EX31_RS09030 0.24 -0.7
318,818 + EX31_RS09030 0.25 +0.2
318,818 + EX31_RS09030 0.25 +0.5
318,818 + EX31_RS09030 0.25 -0.8
318,818 + EX31_RS09030 0.25 +1.0
318,819 - EX31_RS09030 0.25 -3.0
318,819 - EX31_RS09030 0.25 -0.8
318,888 + EX31_RS09030 0.28 -0.1
318,888 + EX31_RS09030 0.28 -0.4
318,888 + EX31_RS09030 0.28 +0.9
318,889 - EX31_RS09030 0.28 -1.9
318,911 + EX31_RS09030 0.28 -0.3
318,911 + EX31_RS09030 0.28 -0.1
318,911 + EX31_RS09030 0.28 +0.6
318,911 + EX31_RS09030 0.28 +0.2
318,911 + EX31_RS09030 0.28 +0.3
318,912 - EX31_RS09030 0.28 -3.3
318,914 + EX31_RS09030 0.29 -0.2
318,915 - EX31_RS09030 0.29 -0.6
318,915 - EX31_RS09030 0.29 -0.8
318,915 - EX31_RS09030 0.29 -1.7
318,933 - EX31_RS09030 0.29 -1.9
318,933 - EX31_RS09030 0.29 -1.3
318,962 + EX31_RS09030 0.30 +0.2
318,962 + EX31_RS09030 0.30 +0.6
318,963 - EX31_RS09030 0.31 -1.2
318,963 - EX31_RS09030 0.31 -1.2
318,963 - EX31_RS09030 0.31 -1.4
318,963 - EX31_RS09030 0.31 +0.4
319,026 + EX31_RS09030 0.33 +0.4
319,034 + EX31_RS09030 0.33 +0.0
319,035 - EX31_RS09030 0.33 -0.6
319,115 + EX31_RS09030 0.37 +0.1
319,116 - EX31_RS09030 0.37 -0.5
319,116 - EX31_RS09030 0.37 -2.3
319,116 - EX31_RS09030 0.37 -1.1
319,142 + EX31_RS09030 0.38 +0.9
319,142 + EX31_RS09030 0.38 +0.4
319,143 - EX31_RS09030 0.38 +0.1

Or see this region's nucleotide sequence