Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS08370 and EX31_RS08375 are separated by 77 nucleotides EX31_RS08375 and EX31_RS08380 are separated by 344 nucleotides
EX31_RS08370: EX31_RS08370 - TerC family protein, at 178,026 to 178,997
_RS08370
EX31_RS08375: EX31_RS08375 - magnesium-translocating P-type ATPase, at 179,075 to 181,777
_RS08375
EX31_RS08380: EX31_RS08380 - HTH-type transcriptional regulator TreR, at 182,122 to 183,078
_RS08380
Position (kb) 179
180
181
182 Strain fitness (log2 ratio) -2
-1
0
1
2 at 178.078 kb on + strand at 178.078 kb on + strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.079 kb on - strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.082 kb on + strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.083 kb on - strand at 178.136 kb on + strand, within EX31_RS08370 at 178.137 kb on - strand, within EX31_RS08370 at 178.137 kb on - strand, within EX31_RS08370 at 178.137 kb on - strand, within EX31_RS08370 at 178.171 kb on + strand, within EX31_RS08370 at 178.209 kb on + strand, within EX31_RS08370 at 178.302 kb on - strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.332 kb on + strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.333 kb on - strand, within EX31_RS08370 at 178.366 kb on + strand, within EX31_RS08370 at 178.374 kb on + strand, within EX31_RS08370 at 178.374 kb on + strand, within EX31_RS08370 at 178.446 kb on - strand, within EX31_RS08370 at 178.459 kb on - strand, within EX31_RS08370 at 178.620 kb on - strand, within EX31_RS08370 at 178.631 kb on + strand, within EX31_RS08370 at 178.632 kb on - strand, within EX31_RS08370 at 178.655 kb on + strand, within EX31_RS08370 at 178.656 kb on - strand, within EX31_RS08370 at 178.656 kb on - strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.779 kb on + strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.780 kb on - strand, within EX31_RS08370 at 178.824 kb on + strand, within EX31_RS08370 at 178.946 kb on + strand at 178.947 kb on - strand at 178.968 kb on - strand at 178.996 kb on - strand at 178.996 kb on - strand at 178.999 kb on - strand at 179.012 kb on + strand at 179.012 kb on + strand at 179.013 kb on - strand at 179.013 kb on - strand at 179.062 kb on - strand at 179.076 kb on + strand at 179.077 kb on - strand at 179.133 kb on + strand at 179.133 kb on + strand at 179.133 kb on + strand at 179.133 kb on + strand at 179.133 kb on + strand at 179.134 kb on - strand at 179.134 kb on - strand at 179.134 kb on - strand at 179.134 kb on - strand at 179.134 kb on - strand at 179.166 kb on + strand at 179.166 kb on + strand at 179.166 kb on + strand at 179.166 kb on + strand at 179.166 kb on + strand at 179.166 kb on + strand at 179.166 kb on + strand at 179.167 kb on - strand at 179.167 kb on - strand at 179.167 kb on - strand at 179.167 kb on - strand at 179.167 kb on - strand at 179.214 kb on + strand at 179.214 kb on + strand at 179.214 kb on + strand at 179.214 kb on + strand at 179.215 kb on - strand at 179.215 kb on - strand at 179.227 kb on + strand at 179.228 kb on - strand at 179.288 kb on - strand at 179.288 kb on - strand at 179.389 kb on + strand, within EX31_RS08375 at 179.399 kb on - strand, within EX31_RS08375 at 179.438 kb on + strand, within EX31_RS08375 at 179.467 kb on + strand, within EX31_RS08375 at 179.467 kb on + strand, within EX31_RS08375 at 179.467 kb on + strand, within EX31_RS08375 at 179.467 kb on + strand, within EX31_RS08375 at 179.468 kb on - strand, within EX31_RS08375 at 179.562 kb on + strand, within EX31_RS08375 at 179.562 kb on + strand, within EX31_RS08375 at 179.562 kb on + strand, within EX31_RS08375 at 179.563 kb on - strand, within EX31_RS08375 at 179.563 kb on - strand, within EX31_RS08375 at 179.679 kb on + strand, within EX31_RS08375 at 179.680 kb on - strand, within EX31_RS08375 at 179.758 kb on + strand, within EX31_RS08375 at 179.758 kb on + strand, within EX31_RS08375 at 179.758 kb on + strand, within EX31_RS08375 at 179.758 kb on + strand, within EX31_RS08375 at 179.889 kb on - strand, within EX31_RS08375 at 180.017 kb on + strand, within EX31_RS08375 at 180.152 kb on - strand, within EX31_RS08375 at 180.153 kb on + strand, within EX31_RS08375 at 180.154 kb on - strand, within EX31_RS08375 at 180.154 kb on - strand, within EX31_RS08375 at 180.220 kb on + strand, within EX31_RS08375 at 180.268 kb on + strand, within EX31_RS08375 at 180.338 kb on - strand, within EX31_RS08375 at 180.418 kb on + strand, within EX31_RS08375 at 180.419 kb on - strand, within EX31_RS08375 at 180.419 kb on - strand, within EX31_RS08375 at 180.467 kb on - strand, within EX31_RS08375 at 180.467 kb on - strand, within EX31_RS08375 at 180.640 kb on + strand, within EX31_RS08375 at 180.655 kb on + strand, within EX31_RS08375 at 180.834 kb on + strand, within EX31_RS08375 at 180.834 kb on + strand, within EX31_RS08375 at 180.835 kb on - strand, within EX31_RS08375 at 180.866 kb on + strand, within EX31_RS08375 at 180.867 kb on - strand, within EX31_RS08375 at 180.867 kb on - strand, within EX31_RS08375 at 180.867 kb on - strand, within EX31_RS08375 at 180.867 kb on - strand, within EX31_RS08375 at 180.874 kb on + strand, within EX31_RS08375 at 180.874 kb on + strand, within EX31_RS08375 at 180.875 kb on - strand, within EX31_RS08375 at 180.934 kb on + strand, within EX31_RS08375 at 180.934 kb on + strand, within EX31_RS08375 at 180.934 kb on + strand, within EX31_RS08375 at 180.934 kb on + strand, within EX31_RS08375 at 180.935 kb on - strand, within EX31_RS08375 at 180.935 kb on - strand, within EX31_RS08375 at 180.935 kb on - strand, within EX31_RS08375 at 180.935 kb on - strand, within EX31_RS08375 at 180.935 kb on - strand, within EX31_RS08375 at 180.935 kb on - strand, within EX31_RS08375 at 180.945 kb on - strand, within EX31_RS08375 at 180.945 kb on - strand, within EX31_RS08375 at 181.036 kb on + strand, within EX31_RS08375 at 181.037 kb on - strand, within EX31_RS08375 at 181.187 kb on - strand, within EX31_RS08375 at 181.187 kb on - strand, within EX31_RS08375 at 181.366 kb on + strand, within EX31_RS08375 at 181.366 kb on + strand, within EX31_RS08375 at 181.367 kb on - strand, within EX31_RS08375 at 181.372 kb on + strand, within EX31_RS08375 at 181.372 kb on + strand, within EX31_RS08375 at 181.373 kb on - strand, within EX31_RS08375 at 181.373 kb on - strand, within EX31_RS08375 at 181.373 kb on - strand, within EX31_RS08375 at 181.422 kb on + strand, within EX31_RS08375 at 181.423 kb on - strand, within EX31_RS08375 at 181.423 kb on - strand, within EX31_RS08375 at 181.600 kb on - strand at 181.600 kb on - strand at 181.649 kb on - strand at 181.682 kb on + strand at 181.682 kb on + strand at 181.682 kb on + strand at 181.683 kb on - strand at 181.712 kb on + strand at 181.729 kb on + strand at 181.730 kb on - strand at 181.834 kb on - strand at 182.008 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.044 kb on + strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.045 kb on - strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.067 kb on + strand at 182.068 kb on - strand at 182.068 kb on - strand at 182.069 kb on + strand at 182.070 kb on - strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.078 kb on + strand at 182.082 kb on + strand at 182.082 kb on + strand at 182.082 kb on + strand at 182.082 kb on + strand at 182.083 kb on - strand at 182.154 kb on + strand at 182.155 kb on - strand at 182.155 kb on - strand at 182.155 kb on - strand at 182.370 kb on - strand, within EX31_RS08380 at 182.370 kb on - strand, within EX31_RS08380 at 182.392 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.404 kb on + strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.405 kb on - strand, within EX31_RS08380 at 182.481 kb on + strand, within EX31_RS08380 at 182.582 kb on + strand, within EX31_RS08380 at 182.596 kb on + strand, within EX31_RS08380 at 182.667 kb on + strand, within EX31_RS08380 at 182.733 kb on + strand, within EX31_RS08380
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 178,078 + +0.4 178,078 + +0.4 178,079 - -0.4 178,079 - -0.2 178,079 - -1.9 178,082 + +0.3 178,082 + -0.4 178,082 + -0.6 178,082 + -0.3 178,082 + +0.3 178,082 + +0.3 178,082 + +0.0 178,082 + -0.5 178,082 + +0.2 178,082 + +0.4 178,082 + +1.4 178,082 + +0.9 178,083 - -0.6 178,083 - -0.3 178,083 - -0.2 178,083 - -0.1 178,083 - -0.7 178,083 - -2.1 178,083 - +0.1 178,083 - -0.7 178,083 - +0.3 178,083 - -0.0 178,136 + EX31_RS08370 0.11 -0.3 178,137 - EX31_RS08370 0.11 -0.3 178,137 - EX31_RS08370 0.11 +0.3 178,137 - EX31_RS08370 0.11 -0.6 178,171 + EX31_RS08370 0.15 -0.9 178,209 + EX31_RS08370 0.19 +0.9 178,302 - EX31_RS08370 0.28 -1.1 178,332 + EX31_RS08370 0.31 -0.5 178,332 + EX31_RS08370 0.31 -1.2 178,332 + EX31_RS08370 0.31 +0.3 178,332 + EX31_RS08370 0.31 -0.3 178,333 - EX31_RS08370 0.32 -0.4 178,333 - EX31_RS08370 0.32 -1.5 178,333 - EX31_RS08370 0.32 -0.3 178,333 - EX31_RS08370 0.32 +0.3 178,333 - EX31_RS08370 0.32 -1.6 178,333 - EX31_RS08370 0.32 -0.7 178,366 + EX31_RS08370 0.35 -0.8 178,374 + EX31_RS08370 0.36 +0.2 178,374 + EX31_RS08370 0.36 -1.6 178,446 - EX31_RS08370 0.43 +0.3 178,459 - EX31_RS08370 0.45 -0.5 178,620 - EX31_RS08370 0.61 -0.0 178,631 + EX31_RS08370 0.62 -0.2 178,632 - EX31_RS08370 0.62 -0.4 178,655 + EX31_RS08370 0.65 -0.0 178,656 - EX31_RS08370 0.65 -0.6 178,656 - EX31_RS08370 0.65 -0.7 178,779 + EX31_RS08370 0.77 -0.2 178,779 + EX31_RS08370 0.77 +0.1 178,779 + EX31_RS08370 0.77 +0.1 178,779 + EX31_RS08370 0.77 +0.0 178,779 + EX31_RS08370 0.77 -0.3 178,779 + EX31_RS08370 0.77 -0.2 178,779 + EX31_RS08370 0.77 -0.2 178,780 - EX31_RS08370 0.78 -0.6 178,780 - EX31_RS08370 0.78 -0.6 178,780 - EX31_RS08370 0.78 -0.9 178,780 - EX31_RS08370 0.78 -0.6 178,780 - EX31_RS08370 0.78 -0.7 178,780 - EX31_RS08370 0.78 +0.8 178,780 - EX31_RS08370 0.78 -2.0 178,780 - EX31_RS08370 0.78 -0.4 178,824 + EX31_RS08370 0.82 +0.8 178,946 + +0.1 178,947 - +0.1 178,968 - -0.5 178,996 - -0.1 178,996 - -0.6 178,999 - -0.7 179,012 + -0.1 179,012 + -0.4 179,013 - -0.6 179,013 - -0.5 179,062 - +0.3 179,076 + +0.6 179,077 - -0.3 179,133 + -1.1 179,133 + -0.5 179,133 + +1.2 179,133 + -1.5 179,133 + -0.6 179,134 - +0.6 179,134 - +0.2 179,134 - +0.1 179,134 - -0.2 179,134 - +0.4 179,166 + -1.4 179,166 + -1.0 179,166 + -1.3 179,166 + +0.1 179,166 + +0.5 179,166 + -1.3 179,166 + -0.3 179,167 - +1.0 179,167 - -0.1 179,167 - -0.9 179,167 - -0.4 179,167 - -0.2 179,214 + -0.2 179,214 + -0.4 179,214 + +0.2 179,214 + -1.0 179,215 - -0.2 179,215 - -0.1 179,227 + -0.0 179,228 - -0.9 179,288 - +0.6 179,288 - +0.3 179,389 + EX31_RS08375 0.12 -0.3 179,399 - EX31_RS08375 0.12 -0.3 179,438 + EX31_RS08375 0.13 -0.3 179,467 + EX31_RS08375 0.15 -1.0 179,467 + EX31_RS08375 0.15 -0.2 179,467 + EX31_RS08375 0.15 +0.1 179,467 + EX31_RS08375 0.15 -0.1 179,468 - EX31_RS08375 0.15 -0.6 179,562 + EX31_RS08375 0.18 -0.2 179,562 + EX31_RS08375 0.18 +0.3 179,562 + EX31_RS08375 0.18 -0.6 179,563 - EX31_RS08375 0.18 +0.4 179,563 - EX31_RS08375 0.18 -0.7 179,679 + EX31_RS08375 0.22 +0.8 179,680 - EX31_RS08375 0.22 +0.1 179,758 + EX31_RS08375 0.25 +0.7 179,758 + EX31_RS08375 0.25 +0.0 179,758 + EX31_RS08375 0.25 -1.1 179,758 + EX31_RS08375 0.25 -0.4 179,889 - EX31_RS08375 0.30 +0.0 180,017 + EX31_RS08375 0.35 +0.2 180,152 - EX31_RS08375 0.40 -0.1 180,153 + EX31_RS08375 0.40 +0.1 180,154 - EX31_RS08375 0.40 +0.4 180,154 - EX31_RS08375 0.40 -0.3 180,220 + EX31_RS08375 0.42 -1.6 180,268 + EX31_RS08375 0.44 +0.8 180,338 - EX31_RS08375 0.47 +0.4 180,418 + EX31_RS08375 0.50 +0.4 180,419 - EX31_RS08375 0.50 -0.1 180,419 - EX31_RS08375 0.50 -0.1 180,467 - EX31_RS08375 0.51 +0.3 180,467 - EX31_RS08375 0.51 -0.8 180,640 + EX31_RS08375 0.58 -0.1 180,655 + EX31_RS08375 0.58 +0.5 180,834 + EX31_RS08375 0.65 -0.2 180,834 + EX31_RS08375 0.65 -0.1 180,835 - EX31_RS08375 0.65 -0.4 180,866 + EX31_RS08375 0.66 +0.0 180,867 - EX31_RS08375 0.66 +0.3 180,867 - EX31_RS08375 0.66 +0.1 180,867 - EX31_RS08375 0.66 +0.3 180,867 - EX31_RS08375 0.66 +1.8 180,874 + EX31_RS08375 0.67 +0.2 180,874 + EX31_RS08375 0.67 -0.3 180,875 - EX31_RS08375 0.67 +0.2 180,934 + EX31_RS08375 0.69 -0.0 180,934 + EX31_RS08375 0.69 -0.6 180,934 + EX31_RS08375 0.69 -0.5 180,934 + EX31_RS08375 0.69 -0.6 180,935 - EX31_RS08375 0.69 +0.2 180,935 - EX31_RS08375 0.69 -0.4 180,935 - EX31_RS08375 0.69 -0.3 180,935 - EX31_RS08375 0.69 +0.2 180,935 - EX31_RS08375 0.69 -0.1 180,935 - EX31_RS08375 0.69 -0.1 180,945 - EX31_RS08375 0.69 -0.4 180,945 - EX31_RS08375 0.69 -0.1 181,036 + EX31_RS08375 0.73 +1.1 181,037 - EX31_RS08375 0.73 +0.1 181,187 - EX31_RS08375 0.78 +0.2 181,187 - EX31_RS08375 0.78 -0.7 181,366 + EX31_RS08375 0.85 -0.1 181,366 + EX31_RS08375 0.85 -0.3 181,367 - EX31_RS08375 0.85 +0.2 181,372 + EX31_RS08375 0.85 -0.7 181,372 + EX31_RS08375 0.85 +0.3 181,373 - EX31_RS08375 0.85 -0.1 181,373 - EX31_RS08375 0.85 +0.0 181,373 - EX31_RS08375 0.85 +0.3 181,422 + EX31_RS08375 0.87 +0.1 181,423 - EX31_RS08375 0.87 +0.1 181,423 - EX31_RS08375 0.87 -1.3 181,600 - +0.4 181,600 - -0.1 181,649 - +0.5 181,682 + +1.3 181,682 + -0.2 181,682 + -0.4 181,683 - +0.1 181,712 + -0.1 181,729 + +0.1 181,730 - +0.2 181,834 - -0.2 182,008 + +0.6 182,044 + +0.0 182,044 + -0.1 182,044 + -2.1 182,044 + -1.5 182,044 + -0.7 182,044 + -0.3 182,044 + -0.5 182,044 + -0.4 182,045 - +0.6 182,045 - -0.2 182,045 - +0.3 182,045 - -0.4 182,045 - +0.6 182,045 - +0.4 182,045 - +0.7 182,045 - +1.0 182,045 - +0.9 182,045 - +0.2 182,045 - +0.1 182,045 - +0.1 182,067 + -0.1 182,067 + +0.1 182,067 + -1.5 182,067 + +0.2 182,067 + -0.3 182,068 - +0.5 182,068 - +0.7 182,069 + +0.6 182,070 - +0.2 182,078 + -0.2 182,078 + +1.1 182,078 + +0.3 182,082 + -1.3 182,082 + -0.8 182,082 + +0.4 182,082 + -0.0 182,083 - -0.6 182,154 + -0.0 182,155 - +0.3 182,155 - -0.1 182,155 - +0.1 182,370 - EX31_RS08380 0.26 +0.4 182,370 - EX31_RS08380 0.26 +1.1 182,392 + EX31_RS08380 0.28 -0.1 182,404 + EX31_RS08380 0.29 +1.2 182,404 + EX31_RS08380 0.29 +0.1 182,404 + EX31_RS08380 0.29 -0.1 182,404 + EX31_RS08380 0.29 -0.9 182,405 - EX31_RS08380 0.30 +0.5 182,405 - EX31_RS08380 0.30 +0.4 182,405 - EX31_RS08380 0.30 +0.1 182,405 - EX31_RS08380 0.30 -0.3 182,481 + EX31_RS08380 0.38 -0.1 182,582 + EX31_RS08380 0.48 +0.5 182,596 + EX31_RS08380 0.50 -0.4 182,667 + EX31_RS08380 0.57 -1.4 182,733 + EX31_RS08380 0.64 +0.4
Or see this region's nucleotide sequence