Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS06915 and EX31_RS06920 are separated by 78 nucleotides EX31_RS06920 and EX31_RS06925 are separated by 218 nucleotides EX31_RS06925 and EX31_RS06930 are separated by 123 nucleotides
EX31_RS06915: EX31_RS06915 - type I glyceraldehyde-3-phosphate dehydrogenase, at 172,471 to 173,481
_RS06915
EX31_RS06920: EX31_RS06920 - GlxA family transcriptional regulator, at 173,560 to 174,549
_RS06920
EX31_RS06925: EX31_RS06925 - transglycosylase SLT domain-containing protein, at 174,768 to 175,373
_RS06925
EX31_RS06930: EX31_RS06930 - cupin domain-containing protein, at 175,497 to 175,859
_RS06930
Position (kb) 173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 172.671 kb on + strand, within EX31_RS06915 at 173.026 kb on - strand, within EX31_RS06915 at 173.026 kb on - strand, within EX31_RS06915 at 173.290 kb on + strand, within EX31_RS06915 at 173.324 kb on - strand, within EX31_RS06915 at 173.388 kb on + strand at 173.389 kb on - strand at 173.470 kb on + strand at 173.470 kb on + strand at 173.471 kb on - strand at 173.494 kb on - strand at 173.512 kb on + strand at 173.684 kb on - strand, within EX31_RS06920 at 173.836 kb on + strand, within EX31_RS06920 at 173.861 kb on - strand, within EX31_RS06920 at 173.960 kb on - strand, within EX31_RS06920 at 174.077 kb on + strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.078 kb on - strand, within EX31_RS06920 at 174.253 kb on + strand, within EX31_RS06920 at 174.254 kb on - strand, within EX31_RS06920 at 174.254 kb on - strand, within EX31_RS06920 at 174.303 kb on + strand, within EX31_RS06920 at 174.304 kb on - strand, within EX31_RS06920 at 174.304 kb on - strand, within EX31_RS06920 at 174.360 kb on + strand, within EX31_RS06920 at 174.484 kb on - strand at 174.509 kb on - strand at 174.509 kb on - strand at 174.509 kb on - strand at 174.574 kb on - strand at 174.694 kb on + strand at 174.698 kb on + strand at 174.909 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.986 kb on + strand, within EX31_RS06925 at 174.987 kb on - strand, within EX31_RS06925 at 174.992 kb on + strand, within EX31_RS06925 at 175.046 kb on + strand, within EX31_RS06925 at 175.119 kb on + strand, within EX31_RS06925 at 175.223 kb on + strand, within EX31_RS06925 at 175.223 kb on + strand, within EX31_RS06925 at 175.265 kb on + strand, within EX31_RS06925 at 175.335 kb on + strand at 175.378 kb on + strand at 175.425 kb on - strand at 175.506 kb on - strand at 175.510 kb on + strand at 175.520 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 172,671 + EX31_RS06915 0.20 +0.1 173,026 - EX31_RS06915 0.55 -0.3 173,026 - EX31_RS06915 0.55 -0.5 173,290 + EX31_RS06915 0.81 -0.6 173,324 - EX31_RS06915 0.84 +2.1 173,388 + -2.1 173,389 - -1.7 173,470 + -0.9 173,470 + -1.8 173,471 - -0.2 173,494 - -0.0 173,512 + +0.3 173,684 - EX31_RS06920 0.13 -0.6 173,836 + EX31_RS06920 0.28 +0.5 173,861 - EX31_RS06920 0.30 -1.1 173,960 - EX31_RS06920 0.40 -1.8 174,077 + EX31_RS06920 0.52 -0.8 174,078 - EX31_RS06920 0.52 +0.4 174,078 - EX31_RS06920 0.52 -1.3 174,078 - EX31_RS06920 0.52 -1.7 174,253 + EX31_RS06920 0.70 -0.5 174,254 - EX31_RS06920 0.70 -0.1 174,254 - EX31_RS06920 0.70 -0.2 174,303 + EX31_RS06920 0.75 +0.8 174,304 - EX31_RS06920 0.75 -1.2 174,304 - EX31_RS06920 0.75 +0.0 174,360 + EX31_RS06920 0.81 +0.4 174,484 - -0.6 174,509 - +1.5 174,509 - -0.1 174,509 - -0.5 174,574 - -0.4 174,694 + +1.4 174,698 + +1.3 174,909 + EX31_RS06925 0.23 -1.8 174,986 + EX31_RS06925 0.36 -0.4 174,986 + EX31_RS06925 0.36 +0.3 174,986 + EX31_RS06925 0.36 +0.4 174,986 + EX31_RS06925 0.36 -0.7 174,986 + EX31_RS06925 0.36 -0.4 174,986 + EX31_RS06925 0.36 -1.2 174,987 - EX31_RS06925 0.36 +2.9 174,992 + EX31_RS06925 0.37 +0.1 175,046 + EX31_RS06925 0.46 +0.6 175,119 + EX31_RS06925 0.58 +0.1 175,223 + EX31_RS06925 0.75 +0.9 175,223 + EX31_RS06925 0.75 +0.5 175,265 + EX31_RS06925 0.82 +0.2 175,335 + +0.0 175,378 + -0.2 175,425 - +0.3 175,506 - -0.1 175,510 + +1.5 175,520 + -0.7
Or see this region's nucleotide sequence