Strain Fitness in Rahnella sp. WP5 around EX31_RS06695

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS06685 and EX31_RS06690 are separated by 202 nucleotidesEX31_RS06690 and EX31_RS06695 are separated by 1 nucleotidesEX31_RS06695 and EX31_RS06700 overlap by 4 nucleotides EX31_RS06685: EX31_RS06685 - cellulose biosynthesis protein BcsE, at 116,217 to 117,815 _RS06685 EX31_RS06690: EX31_RS06690 - hypothetical protein, at 118,018 to 118,218 _RS06690 EX31_RS06695: EX31_RS06695 - cellulose synthase operon protein YhjQ, at 118,220 to 118,963 _RS06695 EX31_RS06700: EX31_RS06700 - UDP-forming cellulose synthase catalytic subunit, at 118,960 to 121,575 _RS06700 Position (kb) 118 119Strain fitness (log2 ratio) -2 -1 0 1at 117.292 kb on - strand, within EX31_RS06685at 117.292 kb on - strand, within EX31_RS06685at 117.292 kb on - strand, within EX31_RS06685at 117.292 kb on - strand, within EX31_RS06685at 117.293 kb on + strand, within EX31_RS06685at 117.293 kb on + strand, within EX31_RS06685at 117.294 kb on - strand, within EX31_RS06685at 117.294 kb on - strand, within EX31_RS06685at 117.294 kb on - strand, within EX31_RS06685at 117.333 kb on - strand, within EX31_RS06685at 117.354 kb on - strand, within EX31_RS06685at 117.430 kb on - strand, within EX31_RS06685at 117.457 kb on - strand, within EX31_RS06685at 117.457 kb on - strand, within EX31_RS06685at 117.457 kb on - strand, within EX31_RS06685at 117.460 kb on - strand, within EX31_RS06685at 117.460 kb on - strand, within EX31_RS06685at 117.547 kb on + strand, within EX31_RS06685at 117.551 kb on - strand, within EX31_RS06685at 117.580 kb on + strand, within EX31_RS06685at 117.581 kb on - strand, within EX31_RS06685at 117.594 kb on - strand, within EX31_RS06685at 117.594 kb on - strand, within EX31_RS06685at 117.710 kb on - strandat 117.816 kb on - strandat 117.817 kb on + strandat 117.817 kb on + strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.818 kb on - strandat 117.821 kb on + strandat 117.822 kb on - strandat 117.822 kb on - strandat 117.832 kb on + strandat 117.881 kb on - strandat 117.885 kb on + strandat 117.886 kb on - strandat 117.890 kb on + strandat 117.892 kb on + strandat 117.892 kb on + strandat 117.906 kb on + strandat 117.907 kb on - strandat 117.910 kb on + strandat 117.910 kb on + strandat 117.911 kb on - strandat 117.916 kb on + strandat 117.919 kb on + strandat 117.919 kb on + strandat 117.919 kb on + strandat 117.920 kb on - strandat 117.929 kb on + strandat 117.942 kb on + strandat 117.989 kb on - strandat 117.989 kb on - strandat 117.992 kb on + strandat 117.992 kb on + strandat 118.029 kb on + strandat 118.034 kb on + strandat 118.115 kb on - strand, within EX31_RS06690at 118.124 kb on + strand, within EX31_RS06690at 118.124 kb on + strand, within EX31_RS06690at 118.125 kb on - strand, within EX31_RS06690at 118.151 kb on + strand, within EX31_RS06690at 118.152 kb on - strand, within EX31_RS06690at 118.190 kb on - strand, within EX31_RS06690at 118.216 kb on + strandat 118.217 kb on - strandat 118.219 kb on + strandat 118.305 kb on + strand, within EX31_RS06695at 118.305 kb on + strand, within EX31_RS06695at 118.305 kb on + strand, within EX31_RS06695at 118.347 kb on + strand, within EX31_RS06695at 118.367 kb on - strand, within EX31_RS06695at 118.408 kb on + strand, within EX31_RS06695at 118.408 kb on + strand, within EX31_RS06695at 118.408 kb on + strand, within EX31_RS06695at 118.409 kb on - strand, within EX31_RS06695at 118.551 kb on + strand, within EX31_RS06695at 118.551 kb on + strand, within EX31_RS06695at 118.552 kb on - strand, within EX31_RS06695at 118.552 kb on - strand, within EX31_RS06695at 118.552 kb on - strand, within EX31_RS06695at 118.552 kb on - strand, within EX31_RS06695at 118.619 kb on - strand, within EX31_RS06695at 118.663 kb on - strand, within EX31_RS06695at 118.670 kb on + strand, within EX31_RS06695at 118.671 kb on - strand, within EX31_RS06695at 118.671 kb on - strand, within EX31_RS06695at 118.671 kb on - strand, within EX31_RS06695at 118.671 kb on - strand, within EX31_RS06695at 118.728 kb on + strand, within EX31_RS06695at 118.749 kb on + strand, within EX31_RS06695at 118.850 kb on - strand, within EX31_RS06695at 118.853 kb on - strand, within EX31_RS06695at 118.858 kb on + strand, within EX31_RS06695at 119.030 kb on - strandat 119.087 kb on + strandat 119.133 kb on + strandat 119.203 kb on + strandat 119.204 kb on - strandat 119.322 kb on - strand, within EX31_RS06700at 119.358 kb on + strand, within EX31_RS06700at 119.404 kb on - strand, within EX31_RS06700at 119.404 kb on - strand, within EX31_RS06700at 119.454 kb on + strand, within EX31_RS06700at 119.470 kb on - strand, within EX31_RS06700at 119.470 kb on - strand, within EX31_RS06700at 119.532 kb on + strand, within EX31_RS06700at 119.594 kb on - strand, within EX31_RS06700at 119.597 kb on + strand, within EX31_RS06700at 119.597 kb on + strand, within EX31_RS06700at 119.597 kb on + strand, within EX31_RS06700at 119.667 kb on - strand, within EX31_RS06700at 119.667 kb on - strand, within EX31_RS06700at 119.681 kb on - strand, within EX31_RS06700at 119.707 kb on + strand, within EX31_RS06700at 119.707 kb on + strand, within EX31_RS06700at 119.707 kb on + strand, within EX31_RS06700at 119.708 kb on - strand, within EX31_RS06700at 119.737 kb on - strand, within EX31_RS06700at 119.800 kb on + strand, within EX31_RS06700at 119.800 kb on + strand, within EX31_RS06700at 119.800 kb on + strand, within EX31_RS06700at 119.801 kb on - strand, within EX31_RS06700at 119.801 kb on - strand, within EX31_RS06700at 119.882 kb on - strand, within EX31_RS06700at 119.882 kb on - strand, within EX31_RS06700at 119.944 kb on + strand, within EX31_RS06700at 119.944 kb on + strand, within EX31_RS06700

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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117,292 - EX31_RS06685 0.67 -0.9
117,292 - EX31_RS06685 0.67 -1.1
117,292 - EX31_RS06685 0.67 -0.4
117,292 - EX31_RS06685 0.67 +0.2
117,293 + EX31_RS06685 0.67 -0.9
117,293 + EX31_RS06685 0.67 -1.0
117,294 - EX31_RS06685 0.67 -0.5
117,294 - EX31_RS06685 0.67 -0.5
117,294 - EX31_RS06685 0.67 -0.0
117,333 - EX31_RS06685 0.70 +0.1
117,354 - EX31_RS06685 0.71 +0.2
117,430 - EX31_RS06685 0.76 +0.5
117,457 - EX31_RS06685 0.78 -0.5
117,457 - EX31_RS06685 0.78 -1.4
117,457 - EX31_RS06685 0.78 -0.8
117,460 - EX31_RS06685 0.78 -0.8
117,460 - EX31_RS06685 0.78 -1.1
117,547 + EX31_RS06685 0.83 -2.1
117,551 - EX31_RS06685 0.83 +0.5
117,580 + EX31_RS06685 0.85 +0.3
117,581 - EX31_RS06685 0.85 -0.3
117,594 - EX31_RS06685 0.86 +1.0
117,594 - EX31_RS06685 0.86 +1.0
117,710 - -1.4
117,816 - +1.6
117,817 + -0.4
117,817 + +0.4
117,818 - +0.5
117,818 - -0.3
117,818 - -0.3
117,818 - -0.4
117,818 - -1.1
117,818 - +0.6
117,818 - +0.1
117,818 - +1.6
117,818 - -0.5
117,818 - -1.1
117,821 + -0.8
117,822 - +0.1
117,822 - -0.1
117,832 + +0.6
117,881 - +0.7
117,885 + -0.4
117,886 - +0.9
117,890 + +0.6
117,892 + +0.1
117,892 + +0.2
117,906 + -0.3
117,907 - -1.3
117,910 + +0.0
117,910 + +0.4
117,911 - -0.7
117,916 + +0.8
117,919 + -1.3
117,919 + -1.2
117,919 + +0.6
117,920 - -0.6
117,929 + +1.2
117,942 + +0.9
117,989 - +1.1
117,989 - -1.4
117,992 + -0.1
117,992 + +0.7
118,029 + +1.2
118,034 + -0.3
118,115 - EX31_RS06690 0.48 -0.8
118,124 + EX31_RS06690 0.53 -0.2
118,124 + EX31_RS06690 0.53 +0.0
118,125 - EX31_RS06690 0.53 -1.6
118,151 + EX31_RS06690 0.66 +0.4
118,152 - EX31_RS06690 0.67 +0.6
118,190 - EX31_RS06690 0.86 -1.4
118,216 + -0.0
118,217 - +0.8
118,219 + +0.1
118,305 + EX31_RS06695 0.11 -0.7
118,305 + EX31_RS06695 0.11 +0.1
118,305 + EX31_RS06695 0.11 +0.3
118,347 + EX31_RS06695 0.17 -0.6
118,367 - EX31_RS06695 0.20 -0.1
118,408 + EX31_RS06695 0.25 +0.3
118,408 + EX31_RS06695 0.25 +0.0
118,408 + EX31_RS06695 0.25 +0.0
118,409 - EX31_RS06695 0.25 +0.2
118,551 + EX31_RS06695 0.44 -1.5
118,551 + EX31_RS06695 0.44 -1.2
118,552 - EX31_RS06695 0.45 -1.5
118,552 - EX31_RS06695 0.45 -0.3
118,552 - EX31_RS06695 0.45 -0.4
118,552 - EX31_RS06695 0.45 -0.5
118,619 - EX31_RS06695 0.54 -0.7
118,663 - EX31_RS06695 0.60 -2.0
118,670 + EX31_RS06695 0.60 -0.3
118,671 - EX31_RS06695 0.61 -0.2
118,671 - EX31_RS06695 0.61 -0.3
118,671 - EX31_RS06695 0.61 -0.3
118,671 - EX31_RS06695 0.61 -1.4
118,728 + EX31_RS06695 0.68 +0.5
118,749 + EX31_RS06695 0.71 -0.7
118,850 - EX31_RS06695 0.85 -1.1
118,853 - EX31_RS06695 0.85 -0.4
118,858 + EX31_RS06695 0.86 -0.0
119,030 - +0.0
119,087 + -0.3
119,133 + -1.1
119,203 + -0.7
119,204 - -0.6
119,322 - EX31_RS06700 0.14 -0.3
119,358 + EX31_RS06700 0.15 +0.1
119,404 - EX31_RS06700 0.17 +0.2
119,404 - EX31_RS06700 0.17 -0.9
119,454 + EX31_RS06700 0.19 -0.1
119,470 - EX31_RS06700 0.19 -1.0
119,470 - EX31_RS06700 0.19 +0.7
119,532 + EX31_RS06700 0.22 -0.8
119,594 - EX31_RS06700 0.24 +0.4
119,597 + EX31_RS06700 0.24 +0.8
119,597 + EX31_RS06700 0.24 -0.3
119,597 + EX31_RS06700 0.24 +0.2
119,667 - EX31_RS06700 0.27 -1.4
119,667 - EX31_RS06700 0.27 +0.6
119,681 - EX31_RS06700 0.28 -0.1
119,707 + EX31_RS06700 0.29 +0.6
119,707 + EX31_RS06700 0.29 +0.4
119,707 + EX31_RS06700 0.29 -1.3
119,708 - EX31_RS06700 0.29 +0.3
119,737 - EX31_RS06700 0.30 -0.5
119,800 + EX31_RS06700 0.32 -0.7
119,800 + EX31_RS06700 0.32 +1.5
119,800 + EX31_RS06700 0.32 -0.5
119,801 - EX31_RS06700 0.32 +0.4
119,801 - EX31_RS06700 0.32 -1.3
119,882 - EX31_RS06700 0.35 -0.3
119,882 - EX31_RS06700 0.35 -0.2
119,944 + EX31_RS06700 0.38 +0.0
119,944 + EX31_RS06700 0.38 -0.1

Or see this region's nucleotide sequence