Strain Fitness in Rahnella sp. WP5 around EX31_RS05220

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS05215 and EX31_RS05220 overlap by 4 nucleotidesEX31_RS05220 and EX31_RS05225 are separated by 554 nucleotides EX31_RS05215: EX31_RS05215 - peptidylprolyl isomerase, at 180,176 to 183,091 _RS05215 EX31_RS05220: EX31_RS05220 - hypothetical protein, at 183,088 to 183,456 _RS05220 EX31_RS05225: EX31_RS05225 - MarR family transcriptional regulator, at 184,011 to 184,943 _RS05225 Position (kb) 183 184Strain fitness (log2 ratio) -3 -2 -1 0 1at 182.158 kb on + strand, within EX31_RS05215at 182.158 kb on + strand, within EX31_RS05215at 182.158 kb on + strand, within EX31_RS05215at 182.159 kb on - strand, within EX31_RS05215at 182.159 kb on - strand, within EX31_RS05215at 182.159 kb on - strand, within EX31_RS05215at 182.159 kb on - strand, within EX31_RS05215at 182.172 kb on - strand, within EX31_RS05215at 182.243 kb on + strand, within EX31_RS05215at 182.243 kb on + strand, within EX31_RS05215at 182.243 kb on + strand, within EX31_RS05215at 182.244 kb on - strand, within EX31_RS05215at 182.244 kb on - strand, within EX31_RS05215at 182.244 kb on - strand, within EX31_RS05215at 182.244 kb on - strand, within EX31_RS05215at 182.297 kb on + strand, within EX31_RS05215at 182.298 kb on - strand, within EX31_RS05215at 182.329 kb on + strand, within EX31_RS05215at 182.330 kb on - strand, within EX31_RS05215at 182.330 kb on - strand, within EX31_RS05215at 182.353 kb on + strand, within EX31_RS05215at 182.353 kb on + strand, within EX31_RS05215at 182.354 kb on - strand, within EX31_RS05215at 182.444 kb on + strand, within EX31_RS05215at 182.444 kb on + strand, within EX31_RS05215at 182.444 kb on + strand, within EX31_RS05215at 182.444 kb on + strand, within EX31_RS05215at 182.445 kb on - strand, within EX31_RS05215at 182.445 kb on - strand, within EX31_RS05215at 182.489 kb on - strand, within EX31_RS05215at 182.609 kb on + strand, within EX31_RS05215at 182.609 kb on + strand, within EX31_RS05215at 182.609 kb on + strand, within EX31_RS05215at 182.610 kb on - strand, within EX31_RS05215at 182.610 kb on - strand, within EX31_RS05215at 182.610 kb on - strand, within EX31_RS05215at 182.610 kb on - strand, within EX31_RS05215at 182.610 kb on - strand, within EX31_RS05215at 182.640 kb on + strand, within EX31_RS05215at 182.641 kb on - strand, within EX31_RS05215at 182.758 kb on + strand, within EX31_RS05215at 182.839 kb on + strandat 182.840 kb on - strandat 182.893 kb on + strandat 183.041 kb on + strandat 183.041 kb on + strandat 183.041 kb on + strandat 183.041 kb on + strandat 183.041 kb on + strandat 183.041 kb on + strandat 183.042 kb on - strandat 183.042 kb on - strandat 183.044 kb on - strandat 183.063 kb on - strandat 183.092 kb on - strandat 183.097 kb on - strandat 183.159 kb on + strand, within EX31_RS05220at 183.159 kb on + strand, within EX31_RS05220at 183.184 kb on + strand, within EX31_RS05220at 183.184 kb on + strand, within EX31_RS05220at 183.211 kb on - strand, within EX31_RS05220at 183.234 kb on + strand, within EX31_RS05220at 183.235 kb on - strand, within EX31_RS05220at 183.280 kb on + strand, within EX31_RS05220at 183.450 kb on + strandat 183.485 kb on - strandat 183.495 kb on - strandat 183.510 kb on + strandat 183.511 kb on - strandat 183.696 kb on + strandat 183.699 kb on - strandat 183.699 kb on - strandat 183.799 kb on - strandat 183.857 kb on + strandat 183.858 kb on - strandat 183.858 kb on - strandat 183.894 kb on - strandat 183.916 kb on - strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.920 kb on + strandat 183.921 kb on - strandat 183.921 kb on - strandat 183.921 kb on - strandat 183.921 kb on - strandat 183.921 kb on - strandat 183.969 kb on + strandat 183.969 kb on + strandat 184.049 kb on + strandat 184.066 kb on - strandat 184.073 kb on + strandat 184.073 kb on + strandat 184.074 kb on - strandat 184.074 kb on - strandat 184.074 kb on - strandat 184.151 kb on + strand, within EX31_RS05225at 184.151 kb on + strand, within EX31_RS05225at 184.158 kb on + strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.159 kb on - strand, within EX31_RS05225at 184.210 kb on - strand, within EX31_RS05225at 184.210 kb on - strand, within EX31_RS05225at 184.231 kb on + strand, within EX31_RS05225at 184.231 kb on + strand, within EX31_RS05225at 184.231 kb on + strand, within EX31_RS05225at 184.232 kb on - strand, within EX31_RS05225at 184.313 kb on + strand, within EX31_RS05225at 184.426 kb on + strand, within EX31_RS05225at 184.444 kb on + strand, within EX31_RS05225at 184.445 kb on - strand, within EX31_RS05225

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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182,158 + EX31_RS05215 0.68 +0.2
182,158 + EX31_RS05215 0.68 -0.9
182,158 + EX31_RS05215 0.68 -0.7
182,159 - EX31_RS05215 0.68 -0.3
182,159 - EX31_RS05215 0.68 -0.5
182,159 - EX31_RS05215 0.68 -0.4
182,159 - EX31_RS05215 0.68 -1.0
182,172 - EX31_RS05215 0.68 -0.2
182,243 + EX31_RS05215 0.71 -0.3
182,243 + EX31_RS05215 0.71 -0.7
182,243 + EX31_RS05215 0.71 +0.0
182,244 - EX31_RS05215 0.71 -0.2
182,244 - EX31_RS05215 0.71 -0.3
182,244 - EX31_RS05215 0.71 -0.5
182,244 - EX31_RS05215 0.71 -0.3
182,297 + EX31_RS05215 0.73 -0.1
182,298 - EX31_RS05215 0.73 +0.5
182,329 + EX31_RS05215 0.74 -0.1
182,330 - EX31_RS05215 0.74 +0.1
182,330 - EX31_RS05215 0.74 -0.5
182,353 + EX31_RS05215 0.75 -0.4
182,353 + EX31_RS05215 0.75 -0.5
182,354 - EX31_RS05215 0.75 +0.3
182,444 + EX31_RS05215 0.78 -0.6
182,444 + EX31_RS05215 0.78 +0.2
182,444 + EX31_RS05215 0.78 +0.3
182,444 + EX31_RS05215 0.78 +0.1
182,445 - EX31_RS05215 0.78 -0.6
182,445 - EX31_RS05215 0.78 -0.5
182,489 - EX31_RS05215 0.79 -1.8
182,609 + EX31_RS05215 0.83 +0.3
182,609 + EX31_RS05215 0.83 -0.7
182,609 + EX31_RS05215 0.83 +0.2
182,610 - EX31_RS05215 0.83 -0.3
182,610 - EX31_RS05215 0.83 -0.6
182,610 - EX31_RS05215 0.83 -1.0
182,610 - EX31_RS05215 0.83 -0.4
182,610 - EX31_RS05215 0.83 -0.4
182,640 + EX31_RS05215 0.84 -0.6
182,641 - EX31_RS05215 0.85 -0.0
182,758 + EX31_RS05215 0.89 -0.0
182,839 + +0.8
182,840 - -0.6
182,893 + -1.0
183,041 + -0.1
183,041 + -0.7
183,041 + +0.4
183,041 + -0.7
183,041 + -0.4
183,041 + -1.5
183,042 - -0.3
183,042 - -0.6
183,044 - -0.4
183,063 - -0.2
183,092 - -0.0
183,097 - +0.5
183,159 + EX31_RS05220 0.19 -1.1
183,159 + EX31_RS05220 0.19 -0.2
183,184 + EX31_RS05220 0.26 -0.6
183,184 + EX31_RS05220 0.26 -1.7
183,211 - EX31_RS05220 0.33 +0.2
183,234 + EX31_RS05220 0.40 -0.8
183,235 - EX31_RS05220 0.40 -0.8
183,280 + EX31_RS05220 0.52 +0.2
183,450 + +0.2
183,485 - -0.5
183,495 - -0.9
183,510 + -0.9
183,511 - -0.2
183,696 + -1.0
183,699 - -0.9
183,699 - -0.7
183,799 - -0.8
183,857 + +0.3
183,858 - -0.1
183,858 - +1.4
183,894 - +0.3
183,916 - -2.8
183,920 + -0.3
183,920 + +0.6
183,920 + +0.5
183,920 + +0.1
183,920 + -0.1
183,920 + +0.1
183,920 + +0.2
183,920 + -0.2
183,920 + +0.2
183,920 + -0.1
183,920 + +0.0
183,921 - +0.1
183,921 - +0.1
183,921 - +0.4
183,921 - -0.5
183,921 - -1.1
183,969 + -2.7
183,969 + +0.0
184,049 + -0.1
184,066 - +0.3
184,073 + -0.4
184,073 + -0.6
184,074 - +0.3
184,074 - +0.6
184,074 - -0.1
184,151 + EX31_RS05225 0.15 -0.6
184,151 + EX31_RS05225 0.15 -0.6
184,158 + EX31_RS05225 0.16 -1.1
184,159 - EX31_RS05225 0.16 -0.0
184,159 - EX31_RS05225 0.16 +0.3
184,159 - EX31_RS05225 0.16 +0.4
184,159 - EX31_RS05225 0.16 +0.6
184,159 - EX31_RS05225 0.16 -0.1
184,159 - EX31_RS05225 0.16 -0.4
184,159 - EX31_RS05225 0.16 +0.6
184,159 - EX31_RS05225 0.16 +0.1
184,210 - EX31_RS05225 0.21 +0.6
184,210 - EX31_RS05225 0.21 +0.7
184,231 + EX31_RS05225 0.24 +1.2
184,231 + EX31_RS05225 0.24 +0.2
184,231 + EX31_RS05225 0.24 -0.4
184,232 - EX31_RS05225 0.24 +0.1
184,313 + EX31_RS05225 0.32 -0.2
184,426 + EX31_RS05225 0.44 -0.2
184,444 + EX31_RS05225 0.46 -1.1
184,445 - EX31_RS05225 0.47 +1.0

Or see this region's nucleotide sequence