Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS03465 and EX31_RS03475 are separated by 208 nucleotides EX31_RS03475 and EX31_RS03480 are separated by 13 nucleotides
EX31_RS03465: EX31_RS03465 - dihydrolipoyl dehydrogenase, at 184,325 to 185,752
_RS03465
EX31_RS03475: EX31_RS03475 - pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase, at 185,961 to 187,859
_RS03475
EX31_RS03480: EX31_RS03480 - pyruvate dehydrogenase (acetyl-transferring), homodimeric type, at 187,873 to 190,536
_RS03480
Position (kb) 185
186
187
188 Strain fitness (log2 ratio) -1
0
1
2
3 at 185.766 kb on - strand at 185.962 kb on + strand at 185.963 kb on - strand at 185.963 kb on - strand at 185.963 kb on - strand at 185.963 kb on - strand at 186.270 kb on - strand, within EX31_RS03475 at 186.767 kb on - strand, within EX31_RS03475 at 186.791 kb on + strand, within EX31_RS03475 at 187.731 kb on - strand at 187.854 kb on - strand at 187.875 kb on - strand at 187.875 kb on - strand at 187.937 kb on - strand at 187.995 kb on - strand at 187.995 kb on - strand at 188.094 kb on - strand at 188.094 kb on - strand at 188.097 kb on + strand at 188.098 kb on - strand at 188.098 kb on - strand at 188.098 kb on - strand at 188.174 kb on + strand, within EX31_RS03480 at 188.175 kb on - strand, within EX31_RS03480 at 188.267 kb on + strand, within EX31_RS03480 at 188.282 kb on - strand, within EX31_RS03480 at 188.320 kb on + strand, within EX31_RS03480 at 188.321 kb on - strand, within EX31_RS03480 at 188.394 kb on - strand, within EX31_RS03480 at 188.394 kb on - strand, within EX31_RS03480 at 188.472 kb on - strand, within EX31_RS03480 at 188.472 kb on - strand, within EX31_RS03480 at 188.474 kb on + strand, within EX31_RS03480 at 188.475 kb on - strand, within EX31_RS03480 at 188.502 kb on - strand, within EX31_RS03480 at 188.505 kb on + strand, within EX31_RS03480 at 188.506 kb on - strand, within EX31_RS03480 at 188.644 kb on - strand, within EX31_RS03480 at 188.644 kb on - strand, within EX31_RS03480 at 188.644 kb on - strand, within EX31_RS03480 at 188.739 kb on - strand, within EX31_RS03480 at 188.742 kb on - strand, within EX31_RS03480 at 188.742 kb on - strand, within EX31_RS03480 at 188.747 kb on + strand, within EX31_RS03480 at 188.747 kb on + strand, within EX31_RS03480 at 188.748 kb on - strand, within EX31_RS03480 at 188.781 kb on - strand, within EX31_RS03480
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 185,766 - -0.3 185,962 + +0.4 185,963 - +0.7 185,963 - +0.5 185,963 - +1.8 185,963 - +0.4 186,270 - EX31_RS03475 0.16 +1.6 186,767 - EX31_RS03475 0.42 +1.8 186,791 + EX31_RS03475 0.44 +0.6 187,731 - +1.4 187,854 - +2.5 187,875 - +2.8 187,875 - +0.4 187,937 - +2.2 187,995 - +2.1 187,995 - +2.4 188,094 - +2.4 188,094 - +2.2 188,097 + +1.3 188,098 - +1.2 188,098 - +3.0 188,098 - +2.0 188,174 + EX31_RS03480 0.11 +1.0 188,175 - EX31_RS03480 0.11 +3.1 188,267 + EX31_RS03480 0.15 +1.1 188,282 - EX31_RS03480 0.15 +2.5 188,320 + EX31_RS03480 0.17 +1.0 188,321 - EX31_RS03480 0.17 +2.9 188,394 - EX31_RS03480 0.20 +1.6 188,394 - EX31_RS03480 0.20 +3.2 188,472 - EX31_RS03480 0.22 +2.3 188,472 - EX31_RS03480 0.22 -0.2 188,474 + EX31_RS03480 0.23 +0.9 188,475 - EX31_RS03480 0.23 +2.7 188,502 - EX31_RS03480 0.24 +2.0 188,505 + EX31_RS03480 0.24 +2.0 188,506 - EX31_RS03480 0.24 +1.1 188,644 - EX31_RS03480 0.29 +1.6 188,644 - EX31_RS03480 0.29 +2.2 188,644 - EX31_RS03480 0.29 +2.6 188,739 - EX31_RS03480 0.33 +1.4 188,742 - EX31_RS03480 0.33 +1.0 188,742 - EX31_RS03480 0.33 +2.4 188,747 + EX31_RS03480 0.33 +1.9 188,747 + EX31_RS03480 0.33 -0.0 188,748 - EX31_RS03480 0.33 +2.6 188,781 - EX31_RS03480 0.34 +0.7
Or see this region's nucleotide sequence