Strain Fitness in Rahnella sp. WP5 around EX31_RS00050

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00040 and EX31_RS00045 are separated by 18 nucleotidesEX31_RS00045 and EX31_RS00050 overlap by 4 nucleotidesEX31_RS00050 and EX31_RS00055 overlap by 4 nucleotidesEX31_RS00055 and EX31_RS00060 overlap by 1 nucleotides EX31_RS00040: EX31_RS00040 - LysR family transcriptional regulator, at 5,985 to 6,908 _RS00040 EX31_RS00045: EX31_RS00045 - ATP-binding cassette domain-containing protein, at 6,927 to 7,892 _RS00045 EX31_RS00050: EX31_RS00050 - ABC transporter ATP-binding protein, at 7,889 to 8,893 _RS00050 EX31_RS00055: EX31_RS00055 - ABC transporter permease, at 8,890 to 9,735 _RS00055 EX31_RS00060: EX31_RS00060 - ABC transporter permease, at 9,735 to 10,694 _RS00060 Position (kb) 7 8 9Strain fitness (log2 ratio) -2 -1 0 1at 7.136 kb on + strand, within EX31_RS00045at 7.188 kb on + strand, within EX31_RS00045at 7.202 kb on - strand, within EX31_RS00045at 7.202 kb on - strand, within EX31_RS00045at 7.202 kb on - strand, within EX31_RS00045at 7.202 kb on - strand, within EX31_RS00045at 7.202 kb on - strand, within EX31_RS00045at 7.257 kb on - strand, within EX31_RS00045at 7.287 kb on + strand, within EX31_RS00045at 7.287 kb on + strand, within EX31_RS00045at 7.288 kb on - strand, within EX31_RS00045at 7.288 kb on - strand, within EX31_RS00045at 7.305 kb on - strand, within EX31_RS00045at 7.444 kb on + strand, within EX31_RS00045at 7.444 kb on + strand, within EX31_RS00045at 7.445 kb on - strand, within EX31_RS00045at 7.511 kb on + strand, within EX31_RS00045at 7.545 kb on - strand, within EX31_RS00045at 7.583 kb on - strand, within EX31_RS00045at 7.617 kb on + strand, within EX31_RS00045at 7.617 kb on + strand, within EX31_RS00045at 7.618 kb on - strand, within EX31_RS00045at 7.618 kb on - strand, within EX31_RS00045at 7.634 kb on + strand, within EX31_RS00045at 7.635 kb on - strand, within EX31_RS00045at 7.693 kb on + strand, within EX31_RS00045at 7.849 kb on + strandat 7.899 kb on - strandat 8.037 kb on + strand, within EX31_RS00050at 8.082 kb on + strand, within EX31_RS00050at 8.083 kb on - strand, within EX31_RS00050at 8.083 kb on - strand, within EX31_RS00050at 8.125 kb on + strand, within EX31_RS00050at 8.125 kb on + strand, within EX31_RS00050at 8.139 kb on + strand, within EX31_RS00050at 8.140 kb on - strand, within EX31_RS00050at 8.202 kb on + strand, within EX31_RS00050at 8.203 kb on - strand, within EX31_RS00050at 8.298 kb on - strand, within EX31_RS00050at 8.300 kb on + strand, within EX31_RS00050at 8.300 kb on + strand, within EX31_RS00050at 8.301 kb on - strand, within EX31_RS00050at 8.375 kb on - strand, within EX31_RS00050at 8.699 kb on - strand, within EX31_RS00050at 8.699 kb on - strand, within EX31_RS00050at 8.819 kb on + strandat 8.967 kb on + strandat 8.971 kb on - strandat 8.971 kb on - strandat 9.048 kb on + strand, within EX31_RS00055at 9.048 kb on + strand, within EX31_RS00055at 9.048 kb on + strand, within EX31_RS00055at 9.049 kb on - strand, within EX31_RS00055at 9.049 kb on - strand, within EX31_RS00055at 9.049 kb on - strand, within EX31_RS00055at 9.083 kb on - strand, within EX31_RS00055at 9.092 kb on + strand, within EX31_RS00055at 9.093 kb on - strand, within EX31_RS00055at 9.175 kb on + strand, within EX31_RS00055at 9.176 kb on - strand, within EX31_RS00055at 9.176 kb on - strand, within EX31_RS00055at 9.323 kb on + strand, within EX31_RS00055at 9.323 kb on + strand, within EX31_RS00055at 9.323 kb on + strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.324 kb on - strand, within EX31_RS00055at 9.378 kb on - strand, within EX31_RS00055at 9.454 kb on - strand, within EX31_RS00055at 9.456 kb on - strand, within EX31_RS00055at 9.456 kb on - strand, within EX31_RS00055at 9.456 kb on - strand, within EX31_RS00055at 9.554 kb on + strand, within EX31_RS00055at 9.555 kb on - strand, within EX31_RS00055at 9.722 kb on - strandat 9.722 kb on - strandat 9.752 kb on + strandat 9.772 kb on + strandat 9.773 kb on - strandat 9.773 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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7,136 + EX31_RS00045 0.22 -0.0
7,188 + EX31_RS00045 0.27 +0.1
7,202 - EX31_RS00045 0.28 -0.1
7,202 - EX31_RS00045 0.28 +1.2
7,202 - EX31_RS00045 0.28 -2.2
7,202 - EX31_RS00045 0.28 -2.1
7,202 - EX31_RS00045 0.28 -0.2
7,257 - EX31_RS00045 0.34 +1.0
7,287 + EX31_RS00045 0.37 -0.3
7,287 + EX31_RS00045 0.37 -0.5
7,288 - EX31_RS00045 0.37 -1.6
7,288 - EX31_RS00045 0.37 -0.4
7,305 - EX31_RS00045 0.39 +0.7
7,444 + EX31_RS00045 0.54 -0.0
7,444 + EX31_RS00045 0.54 -0.2
7,445 - EX31_RS00045 0.54 +0.7
7,511 + EX31_RS00045 0.60 -0.0
7,545 - EX31_RS00045 0.64 +0.2
7,583 - EX31_RS00045 0.68 -1.0
7,617 + EX31_RS00045 0.71 -0.4
7,617 + EX31_RS00045 0.71 +1.2
7,618 - EX31_RS00045 0.72 -0.8
7,618 - EX31_RS00045 0.72 +1.3
7,634 + EX31_RS00045 0.73 +0.1
7,635 - EX31_RS00045 0.73 +0.4
7,693 + EX31_RS00045 0.79 +0.3
7,849 + -0.6
7,899 - -1.3
8,037 + EX31_RS00050 0.15 -0.5
8,082 + EX31_RS00050 0.19 -1.2
8,083 - EX31_RS00050 0.19 +0.2
8,083 - EX31_RS00050 0.19 +1.0
8,125 + EX31_RS00050 0.23 +0.4
8,125 + EX31_RS00050 0.23 +0.2
8,139 + EX31_RS00050 0.25 -0.3
8,140 - EX31_RS00050 0.25 -0.5
8,202 + EX31_RS00050 0.31 -0.7
8,203 - EX31_RS00050 0.31 -1.5
8,298 - EX31_RS00050 0.41 -0.3
8,300 + EX31_RS00050 0.41 -1.1
8,300 + EX31_RS00050 0.41 -0.2
8,301 - EX31_RS00050 0.41 -1.5
8,375 - EX31_RS00050 0.48 -0.8
8,699 - EX31_RS00050 0.81 -1.3
8,699 - EX31_RS00050 0.81 +0.1
8,819 + -0.0
8,967 + +0.1
8,971 - +0.5
8,971 - -0.1
9,048 + EX31_RS00055 0.19 -0.1
9,048 + EX31_RS00055 0.19 +1.1
9,048 + EX31_RS00055 0.19 -0.2
9,049 - EX31_RS00055 0.19 -0.4
9,049 - EX31_RS00055 0.19 +0.1
9,049 - EX31_RS00055 0.19 +0.6
9,083 - EX31_RS00055 0.23 +0.3
9,092 + EX31_RS00055 0.24 +0.6
9,093 - EX31_RS00055 0.24 +0.7
9,175 + EX31_RS00055 0.34 +0.2
9,176 - EX31_RS00055 0.34 +1.3
9,176 - EX31_RS00055 0.34 +0.7
9,323 + EX31_RS00055 0.51 -0.7
9,323 + EX31_RS00055 0.51 +0.2
9,323 + EX31_RS00055 0.51 +0.2
9,324 - EX31_RS00055 0.51 +0.0
9,324 - EX31_RS00055 0.51 +1.1
9,324 - EX31_RS00055 0.51 +1.4
9,324 - EX31_RS00055 0.51 -0.1
9,324 - EX31_RS00055 0.51 +0.3
9,324 - EX31_RS00055 0.51 -0.9
9,324 - EX31_RS00055 0.51 +0.0
9,324 - EX31_RS00055 0.51 -0.5
9,324 - EX31_RS00055 0.51 -0.5
9,378 - EX31_RS00055 0.58 +0.3
9,454 - EX31_RS00055 0.67 -0.0
9,456 - EX31_RS00055 0.67 -0.0
9,456 - EX31_RS00055 0.67 -0.1
9,456 - EX31_RS00055 0.67 -0.6
9,554 + EX31_RS00055 0.78 -0.0
9,555 - EX31_RS00055 0.79 -0.9
9,722 - -0.1
9,722 - +0.5
9,752 + -0.0
9,772 + +0.6
9,773 - +1.4
9,773 - -0.4

Or see this region's nucleotide sequence