Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24150 and EX31_RS24155 are separated by 56 nucleotides EX31_RS24155 and EX31_RS24160 are separated by 148 nucleotides EX31_RS24160 and EX31_RS24165 are separated by 58 nucleotides EX31_RS24165 and EX31_RS24170 are separated by 11 nucleotides EX31_RS24170 and EX31_RS24175 are separated by 267 nucleotides EX31_RS24175 and EX31_RS24180 are separated by 223 nucleotides
EX31_RS24150: EX31_RS24150 - excinuclease ABC subunit UvrC, at 602,057 to 603,913
_RS24150
EX31_RS24155: EX31_RS24155 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 603,970 to 604,518
_RS24155
EX31_RS24160: EX31_RS24160 - tRNA-Gly, at 604,667 to 604,742
_RS24160
EX31_RS24165: EX31_RS24165 - tRNA-Cys, at 604,801 to 604,874
_RS24165
EX31_RS24170: EX31_RS24170 - tRNA-Leu, at 604,886 to 604,971
_RS24170
EX31_RS24175: EX31_RS24175 - hypothetical protein, at 605,239 to 605,505
_RS24175
EX31_RS24180: EX31_RS24180 - serine/threonine protein phosphatase, at 605,729 to 606,388
_RS24180
Position (kb) 604
605 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 603.803 kb on + strand at 603.803 kb on + strand at 603.803 kb on + strand at 603.804 kb on - strand at 603.804 kb on - strand at 603.804 kb on - strand at 603.804 kb on - strand at 603.825 kb on + strand at 603.826 kb on - strand at 603.871 kb on + strand at 603.872 kb on - strand at 603.911 kb on + strand at 603.922 kb on + strand at 603.922 kb on + strand at 603.922 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.930 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.936 kb on + strand at 603.939 kb on + strand at 603.960 kb on + strand at 603.969 kb on + strand at 604.636 kb on + strand at 604.640 kb on + strand at 604.788 kb on + strand at 604.788 kb on + strand at 604.788 kb on + strand at 605.007 kb on + strand at 605.007 kb on + strand at 605.007 kb on + strand at 605.007 kb on + strand at 605.007 kb on + strand at 605.010 kb on + strand at 605.010 kb on + strand at 605.010 kb on + strand at 605.010 kb on + strand at 605.010 kb on + strand at 605.021 kb on + strand at 605.021 kb on + strand at 605.021 kb on + strand at 605.021 kb on + strand at 605.118 kb on + strand at 605.185 kb on - strand at 605.210 kb on + strand at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.298 kb on - strand, within EX31_RS24175 at 605.301 kb on + strand, within EX31_RS24175 at 605.301 kb on + strand, within EX31_RS24175 at 605.302 kb on - strand, within EX31_RS24175 at 605.302 kb on - strand, within EX31_RS24175 at 605.382 kb on + strand, within EX31_RS24175 at 605.382 kb on + strand, within EX31_RS24175 at 605.383 kb on - strand, within EX31_RS24175 at 605.383 kb on - strand, within EX31_RS24175 at 605.383 kb on - strand, within EX31_RS24175 at 605.383 kb on - strand, within EX31_RS24175 at 605.433 kb on + strand, within EX31_RS24175 at 605.433 kb on + strand, within EX31_RS24175 at 605.433 kb on + strand, within EX31_RS24175 at 605.434 kb on - strand, within EX31_RS24175 at 605.449 kb on - strand, within EX31_RS24175 at 605.449 kb on - strand, within EX31_RS24175 at 605.449 kb on - strand, within EX31_RS24175 at 605.449 kb on - strand, within EX31_RS24175 at 605.449 kb on - strand, within EX31_RS24175 at 605.465 kb on - strand, within EX31_RS24175 at 605.489 kb on - strand at 605.525 kb on - strand at 605.542 kb on - strand at 605.562 kb on - strand at 605.580 kb on + strand at 605.639 kb on + strand at 605.640 kb on - strand at 605.687 kb on + strand at 605.687 kb on + strand at 605.688 kb on - strand at 605.688 kb on - strand at 605.693 kb on + strand at 605.693 kb on + strand at 605.698 kb on + strand at 605.699 kb on - strand at 605.728 kb on + strand at 605.744 kb on + strand at 605.745 kb on - strand at 605.768 kb on + strand at 605.769 kb on - strand at 605.769 kb on - strand at 605.769 kb on - strand at 605.769 kb on - strand at 605.769 kb on - strand at 605.769 kb on - strand at 605.780 kb on + strand at 605.780 kb on + strand at 605.780 kb on + strand at 605.781 kb on - strand at 605.782 kb on + strand at 605.782 kb on + strand at 605.783 kb on - strand at 605.783 kb on - strand at 605.814 kb on + strand, within EX31_RS24180 at 605.814 kb on + strand, within EX31_RS24180 at 605.814 kb on + strand, within EX31_RS24180 at 605.814 kb on + strand, within EX31_RS24180 at 605.815 kb on - strand, within EX31_RS24180 at 605.868 kb on + strand, within EX31_RS24180 at 605.868 kb on + strand, within EX31_RS24180 at 605.868 kb on + strand, within EX31_RS24180 at 605.868 kb on + strand, within EX31_RS24180 at 605.869 kb on - strand, within EX31_RS24180
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 603,803 + -0.8 603,803 + -0.1 603,803 + -0.1 603,804 - +0.1 603,804 - -1.1 603,804 - +0.2 603,804 - -0.9 603,825 + +0.2 603,826 - -2.4 603,871 + +0.6 603,872 - -0.5 603,911 + -0.0 603,922 + -0.6 603,922 + +0.6 603,922 + -0.0 603,930 + +0.6 603,930 + -0.6 603,930 + +1.1 603,930 + +0.1 603,930 + +0.2 603,930 + +2.0 603,936 + +0.6 603,936 + -0.0 603,936 + -0.6 603,936 + +0.5 603,936 + +0.9 603,936 + +0.6 603,936 + +0.3 603,939 + +1.3 603,960 + -0.4 603,969 + +0.6 604,636 + +2.1 604,640 + +2.3 604,788 + +0.8 604,788 + +2.8 604,788 + +2.2 605,007 + +2.5 605,007 + +1.9 605,007 + +2.4 605,007 + +2.1 605,007 + +1.7 605,010 + +1.9 605,010 + +2.0 605,010 + +2.4 605,010 + +2.6 605,010 + +2.7 605,021 + +1.7 605,021 + +1.8 605,021 + +1.9 605,021 + +2.0 605,118 + -0.8 605,185 - +0.7 605,210 + -0.5 605,298 - EX31_RS24175 0.22 +0.2 605,298 - EX31_RS24175 0.22 +0.3 605,298 - EX31_RS24175 0.22 +0.3 605,298 - EX31_RS24175 0.22 -0.5 605,298 - EX31_RS24175 0.22 +0.6 605,298 - EX31_RS24175 0.22 +1.1 605,298 - EX31_RS24175 0.22 +0.7 605,298 - EX31_RS24175 0.22 -0.8 605,301 + EX31_RS24175 0.23 -0.5 605,301 + EX31_RS24175 0.23 -1.0 605,302 - EX31_RS24175 0.24 -0.2 605,302 - EX31_RS24175 0.24 +0.2 605,382 + EX31_RS24175 0.54 -1.5 605,382 + EX31_RS24175 0.54 -0.8 605,383 - EX31_RS24175 0.54 +0.5 605,383 - EX31_RS24175 0.54 -0.8 605,383 - EX31_RS24175 0.54 +0.3 605,383 - EX31_RS24175 0.54 +1.1 605,433 + EX31_RS24175 0.73 -1.4 605,433 + EX31_RS24175 0.73 -0.5 605,433 + EX31_RS24175 0.73 -0.4 605,434 - EX31_RS24175 0.73 +0.0 605,449 - EX31_RS24175 0.79 +0.2 605,449 - EX31_RS24175 0.79 -1.0 605,449 - EX31_RS24175 0.79 +0.7 605,449 - EX31_RS24175 0.79 -0.6 605,449 - EX31_RS24175 0.79 +0.3 605,465 - EX31_RS24175 0.85 -0.1 605,489 - -0.2 605,525 - -1.0 605,542 - +0.3 605,562 - +0.2 605,580 + -1.0 605,639 + -0.7 605,640 - -0.1 605,687 + -1.4 605,687 + -0.0 605,688 - +0.1 605,688 - -2.3 605,693 + -1.1 605,693 + -0.9 605,698 + -1.8 605,699 - +0.4 605,728 + +0.1 605,744 + +0.1 605,745 - -0.3 605,768 + -0.1 605,769 - +0.2 605,769 - -0.3 605,769 - +0.1 605,769 - +0.3 605,769 - -1.3 605,769 - -0.3 605,780 + -2.4 605,780 + -0.5 605,780 + +1.1 605,781 - -1.1 605,782 + +0.3 605,782 + +1.1 605,783 - +0.5 605,783 - -0.2 605,814 + EX31_RS24180 0.13 -0.3 605,814 + EX31_RS24180 0.13 -0.8 605,814 + EX31_RS24180 0.13 -0.1 605,814 + EX31_RS24180 0.13 -0.9 605,815 - EX31_RS24180 0.13 -0.8 605,868 + EX31_RS24180 0.21 -0.8 605,868 + EX31_RS24180 0.21 +0.8 605,868 + EX31_RS24180 0.21 +0.4 605,868 + EX31_RS24180 0.21 -0.3 605,869 - EX31_RS24180 0.21 -1.1
Or see this region's nucleotide sequence