Strain Fitness in Rahnella sp. WP5 around EX31_RS14560

Experiment: NL-CCM; ambient oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS14550 and EX31_RS14555 are separated by 37 nucleotidesEX31_RS14555 and EX31_RS14560 overlap by 1 nucleotidesEX31_RS14560 and EX31_RS14565 are separated by 189 nucleotides EX31_RS14550: EX31_RS14550 - Trk system potassium transporter TrkH, at 1,117 to 2,568 _RS14550 EX31_RS14555: EX31_RS14555 - IMPACT family protein, at 2,606 to 3,217 _RS14555 EX31_RS14560: EX31_RS14560 - Xaa-Pro dipeptidase, at 3,217 to 4,548 _RS14560 EX31_RS14565: EX31_RS14565 - fatty acid oxidation complex subunit alpha FadB, at 4,738 to 6,930 _RS14565 Position (kb) 3 4 5Strain fitness (log2 ratio) -3 -2 -1 0 1at 2.598 kb on - strandat 2.598 kb on - strandat 2.735 kb on - strand, within EX31_RS14555at 2.775 kb on - strand, within EX31_RS14555at 2.833 kb on + strand, within EX31_RS14555at 2.834 kb on - strand, within EX31_RS14555at 2.834 kb on - strand, within EX31_RS14555at 2.834 kb on - strand, within EX31_RS14555at 2.834 kb on - strand, within EX31_RS14555at 2.834 kb on - strand, within EX31_RS14555at 2.900 kb on + strand, within EX31_RS14555at 2.900 kb on + strand, within EX31_RS14555at 2.901 kb on - strand, within EX31_RS14555at 2.901 kb on - strand, within EX31_RS14555at 2.910 kb on + strand, within EX31_RS14555at 2.910 kb on + strand, within EX31_RS14555at 2.910 kb on + strand, within EX31_RS14555at 2.910 kb on + strand, within EX31_RS14555at 2.910 kb on + strand, within EX31_RS14555at 2.911 kb on - strand, within EX31_RS14555at 2.911 kb on - strand, within EX31_RS14555at 2.913 kb on + strand, within EX31_RS14555at 2.913 kb on + strand, within EX31_RS14555at 2.914 kb on - strand, within EX31_RS14555at 2.966 kb on + strand, within EX31_RS14555at 2.966 kb on + strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 2.967 kb on - strand, within EX31_RS14555at 3.047 kb on + strand, within EX31_RS14555at 3.047 kb on + strand, within EX31_RS14555at 3.047 kb on + strand, within EX31_RS14555at 3.048 kb on - strand, within EX31_RS14555at 3.048 kb on - strand, within EX31_RS14555at 3.048 kb on - strand, within EX31_RS14555at 3.048 kb on - strand, within EX31_RS14555at 3.104 kb on - strand, within EX31_RS14555at 3.167 kb on + strandat 3.168 kb on - strandat 3.168 kb on - strandat 3.168 kb on - strandat 3.168 kb on - strandat 3.244 kb on - strandat 3.244 kb on - strandat 3.253 kb on - strandat 3.343 kb on - strandat 3.386 kb on + strand, within EX31_RS14560at 3.386 kb on + strand, within EX31_RS14560at 3.386 kb on + strand, within EX31_RS14560at 3.386 kb on + strand, within EX31_RS14560at 3.387 kb on - strand, within EX31_RS14560at 3.387 kb on - strand, within EX31_RS14560at 3.387 kb on - strand, within EX31_RS14560at 3.387 kb on - strand, within EX31_RS14560at 3.435 kb on + strand, within EX31_RS14560at 3.436 kb on - strand, within EX31_RS14560at 3.447 kb on - strand, within EX31_RS14560at 3.613 kb on - strand, within EX31_RS14560at 3.659 kb on + strand, within EX31_RS14560at 3.666 kb on + strand, within EX31_RS14560at 3.668 kb on + strand, within EX31_RS14560at 3.669 kb on - strand, within EX31_RS14560at 3.669 kb on - strand, within EX31_RS14560at 3.684 kb on + strand, within EX31_RS14560at 3.690 kb on + strand, within EX31_RS14560at 3.691 kb on - strand, within EX31_RS14560at 3.691 kb on - strand, within EX31_RS14560at 3.697 kb on + strand, within EX31_RS14560at 3.764 kb on + strand, within EX31_RS14560at 3.764 kb on + strand, within EX31_RS14560at 3.765 kb on - strand, within EX31_RS14560at 3.765 kb on - strand, within EX31_RS14560at 3.765 kb on - strand, within EX31_RS14560at 3.768 kb on + strand, within EX31_RS14560at 3.768 kb on + strand, within EX31_RS14560at 3.769 kb on - strand, within EX31_RS14560at 3.788 kb on + strand, within EX31_RS14560at 3.789 kb on - strand, within EX31_RS14560at 3.795 kb on + strand, within EX31_RS14560at 3.797 kb on + strand, within EX31_RS14560at 3.797 kb on + strand, within EX31_RS14560at 3.797 kb on + strand, within EX31_RS14560at 3.797 kb on + strand, within EX31_RS14560at 3.798 kb on - strand, within EX31_RS14560at 3.798 kb on - strand, within EX31_RS14560at 3.798 kb on - strand, within EX31_RS14560at 3.798 kb on - strand, within EX31_RS14560at 3.859 kb on - strand, within EX31_RS14560at 3.863 kb on + strand, within EX31_RS14560at 3.863 kb on + strand, within EX31_RS14560at 3.863 kb on + strand, within EX31_RS14560at 3.863 kb on + strand, within EX31_RS14560at 3.863 kb on + strand, within EX31_RS14560at 3.863 kb on + strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.864 kb on - strand, within EX31_RS14560at 3.871 kb on + strand, within EX31_RS14560at 3.908 kb on + strand, within EX31_RS14560at 3.909 kb on - strand, within EX31_RS14560at 3.922 kb on - strand, within EX31_RS14560at 3.947 kb on + strand, within EX31_RS14560at 3.961 kb on - strand, within EX31_RS14560at 3.961 kb on - strand, within EX31_RS14560at 4.041 kb on + strand, within EX31_RS14560at 4.056 kb on - strand, within EX31_RS14560at 4.056 kb on - strand, within EX31_RS14560at 4.065 kb on + strand, within EX31_RS14560at 4.066 kb on - strand, within EX31_RS14560at 4.068 kb on - strand, within EX31_RS14560at 4.079 kb on + strand, within EX31_RS14560at 4.080 kb on - strand, within EX31_RS14560at 4.080 kb on - strand, within EX31_RS14560at 4.157 kb on + strand, within EX31_RS14560at 4.166 kb on + strand, within EX31_RS14560at 4.167 kb on - strand, within EX31_RS14560at 4.167 kb on - strand, within EX31_RS14560at 4.301 kb on + strand, within EX31_RS14560at 4.302 kb on - strand, within EX31_RS14560at 4.406 kb on + strand, within EX31_RS14560at 4.407 kb on - strand, within EX31_RS14560at 4.515 kb on + strandat 4.516 kb on - strandat 4.526 kb on + strandat 4.527 kb on - strandat 4.533 kb on + strandat 4.534 kb on - strandat 4.590 kb on - strandat 4.590 kb on - strandat 4.590 kb on - strandat 4.590 kb on - strandat 4.590 kb on - strandat 4.611 kb on + strandat 4.611 kb on + strandat 4.611 kb on + strandat 4.611 kb on + strandat 4.611 kb on + strandat 4.611 kb on + strandat 4.611 kb on + strandat 4.612 kb on - strandat 4.744 kb on + strandat 4.744 kb on + strandat 4.760 kb on + strandat 4.760 kb on + strandat 4.760 kb on + strandat 4.760 kb on + strandat 4.760 kb on + strandat 4.760 kb on + strandat 4.760 kb on + strandat 4.761 kb on - strandat 4.761 kb on - strandat 4.761 kb on - strandat 4.761 kb on - strandat 4.761 kb on - strandat 4.761 kb on - strandat 4.871 kb on + strandat 4.872 kb on - strandat 4.872 kb on - strandat 4.930 kb on - strandat 5.162 kb on + strand, within EX31_RS14565at 5.169 kb on + strand, within EX31_RS14565at 5.170 kb on - strand, within EX31_RS14565at 5.170 kb on - strand, within EX31_RS14565at 5.170 kb on - strand, within EX31_RS14565at 5.214 kb on + strand, within EX31_RS14565at 5.215 kb on - strand, within EX31_RS14565at 5.254 kb on - strand, within EX31_RS14565at 5.373 kb on + strand, within EX31_RS14565at 5.373 kb on + strand, within EX31_RS14565at 5.374 kb on - strand, within EX31_RS14565at 5.374 kb on - strand, within EX31_RS14565at 5.389 kb on - strand, within EX31_RS14565at 5.451 kb on + strand, within EX31_RS14565at 5.451 kb on + strand, within EX31_RS14565at 5.451 kb on + strand, within EX31_RS14565at 5.451 kb on + strand, within EX31_RS14565at 5.452 kb on - strand, within EX31_RS14565at 5.452 kb on - strand, within EX31_RS14565at 5.452 kb on - strand, within EX31_RS14565at 5.452 kb on - strand, within EX31_RS14565at 5.479 kb on + strand, within EX31_RS14565at 5.510 kb on + strand, within EX31_RS14565

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
remove
2,598 - -0.3
2,598 - +0.2
2,735 - EX31_RS14555 0.21 +0.5
2,775 - EX31_RS14555 0.28 +0.5
2,833 + EX31_RS14555 0.37 -1.4
2,834 - EX31_RS14555 0.37 +0.5
2,834 - EX31_RS14555 0.37 -0.1
2,834 - EX31_RS14555 0.37 -0.1
2,834 - EX31_RS14555 0.37 -0.0
2,834 - EX31_RS14555 0.37 -0.1
2,900 + EX31_RS14555 0.48 -1.5
2,900 + EX31_RS14555 0.48 +0.3
2,901 - EX31_RS14555 0.48 -0.6
2,901 - EX31_RS14555 0.48 +0.0
2,910 + EX31_RS14555 0.50 +0.1
2,910 + EX31_RS14555 0.50 -0.0
2,910 + EX31_RS14555 0.50 -0.9
2,910 + EX31_RS14555 0.50 +0.6
2,910 + EX31_RS14555 0.50 -0.0
2,911 - EX31_RS14555 0.50 -0.4
2,911 - EX31_RS14555 0.50 -0.1
2,913 + EX31_RS14555 0.50 +0.0
2,913 + EX31_RS14555 0.50 -0.3
2,914 - EX31_RS14555 0.50 -1.1
2,966 + EX31_RS14555 0.59 -0.1
2,966 + EX31_RS14555 0.59 -0.3
2,967 - EX31_RS14555 0.59 +0.4
2,967 - EX31_RS14555 0.59 +0.9
2,967 - EX31_RS14555 0.59 -0.2
2,967 - EX31_RS14555 0.59 -0.2
2,967 - EX31_RS14555 0.59 +0.4
2,967 - EX31_RS14555 0.59 +0.5
2,967 - EX31_RS14555 0.59 +0.4
2,967 - EX31_RS14555 0.59 +0.7
2,967 - EX31_RS14555 0.59 +0.0
3,047 + EX31_RS14555 0.72 -0.6
3,047 + EX31_RS14555 0.72 +1.3
3,047 + EX31_RS14555 0.72 +1.0
3,048 - EX31_RS14555 0.72 -0.9
3,048 - EX31_RS14555 0.72 -0.2
3,048 - EX31_RS14555 0.72 -0.2
3,048 - EX31_RS14555 0.72 +0.2
3,104 - EX31_RS14555 0.81 -0.4
3,167 + +0.2
3,168 - -1.2
3,168 - +0.2
3,168 - -0.9
3,168 - -0.2
3,244 - -0.4
3,244 - +0.0
3,253 - -0.3
3,343 - -0.3
3,386 + EX31_RS14560 0.13 +0.4
3,386 + EX31_RS14560 0.13 -0.4
3,386 + EX31_RS14560 0.13 -0.3
3,386 + EX31_RS14560 0.13 +0.9
3,387 - EX31_RS14560 0.13 +0.5
3,387 - EX31_RS14560 0.13 +0.1
3,387 - EX31_RS14560 0.13 -0.6
3,387 - EX31_RS14560 0.13 -0.7
3,435 + EX31_RS14560 0.16 +0.5
3,436 - EX31_RS14560 0.16 -1.2
3,447 - EX31_RS14560 0.17 +0.4
3,613 - EX31_RS14560 0.30 +0.5
3,659 + EX31_RS14560 0.33 +0.7
3,666 + EX31_RS14560 0.34 -0.9
3,668 + EX31_RS14560 0.34 -0.4
3,669 - EX31_RS14560 0.34 -0.4
3,669 - EX31_RS14560 0.34 -0.1
3,684 + EX31_RS14560 0.35 -0.1
3,690 + EX31_RS14560 0.36 +0.7
3,691 - EX31_RS14560 0.36 +0.3
3,691 - EX31_RS14560 0.36 +0.1
3,697 + EX31_RS14560 0.36 +0.1
3,764 + EX31_RS14560 0.41 -1.2
3,764 + EX31_RS14560 0.41 -0.5
3,765 - EX31_RS14560 0.41 +0.2
3,765 - EX31_RS14560 0.41 +0.5
3,765 - EX31_RS14560 0.41 -0.6
3,768 + EX31_RS14560 0.41 +0.9
3,768 + EX31_RS14560 0.41 +1.2
3,769 - EX31_RS14560 0.41 +0.8
3,788 + EX31_RS14560 0.43 -2.4
3,789 - EX31_RS14560 0.43 +0.1
3,795 + EX31_RS14560 0.43 +0.4
3,797 + EX31_RS14560 0.44 -0.3
3,797 + EX31_RS14560 0.44 -0.1
3,797 + EX31_RS14560 0.44 -0.7
3,797 + EX31_RS14560 0.44 -2.2
3,798 - EX31_RS14560 0.44 -0.0
3,798 - EX31_RS14560 0.44 +0.8
3,798 - EX31_RS14560 0.44 -0.2
3,798 - EX31_RS14560 0.44 -0.3
3,859 - EX31_RS14560 0.48 +0.2
3,863 + EX31_RS14560 0.48 -0.4
3,863 + EX31_RS14560 0.48 -0.8
3,863 + EX31_RS14560 0.48 +0.5
3,863 + EX31_RS14560 0.48 -0.2
3,863 + EX31_RS14560 0.48 -1.0
3,863 + EX31_RS14560 0.48 -1.6
3,864 - EX31_RS14560 0.49 +0.2
3,864 - EX31_RS14560 0.49 -1.2
3,864 - EX31_RS14560 0.49 +1.3
3,864 - EX31_RS14560 0.49 -0.3
3,864 - EX31_RS14560 0.49 +0.2
3,864 - EX31_RS14560 0.49 +0.3
3,864 - EX31_RS14560 0.49 -0.1
3,864 - EX31_RS14560 0.49 -0.6
3,864 - EX31_RS14560 0.49 +0.1
3,871 + EX31_RS14560 0.49 -1.0
3,908 + EX31_RS14560 0.52 -0.0
3,909 - EX31_RS14560 0.52 -0.2
3,922 - EX31_RS14560 0.53 -0.3
3,947 + EX31_RS14560 0.55 -1.7
3,961 - EX31_RS14560 0.56 +0.5
3,961 - EX31_RS14560 0.56 +0.4
4,041 + EX31_RS14560 0.62 -0.1
4,056 - EX31_RS14560 0.63 -0.5
4,056 - EX31_RS14560 0.63 +0.5
4,065 + EX31_RS14560 0.64 -0.9
4,066 - EX31_RS14560 0.64 +0.5
4,068 - EX31_RS14560 0.64 +0.4
4,079 + EX31_RS14560 0.65 -0.5
4,080 - EX31_RS14560 0.65 -0.1
4,080 - EX31_RS14560 0.65 -0.5
4,157 + EX31_RS14560 0.71 -0.0
4,166 + EX31_RS14560 0.71 -0.4
4,167 - EX31_RS14560 0.71 +0.2
4,167 - EX31_RS14560 0.71 +0.1
4,301 + EX31_RS14560 0.81 -2.3
4,302 - EX31_RS14560 0.81 +0.8
4,406 + EX31_RS14560 0.89 +0.6
4,407 - EX31_RS14560 0.89 -0.7
4,515 + +0.0
4,516 - -0.8
4,526 + -0.5
4,527 - -1.1
4,533 + -0.2
4,534 - -0.5
4,590 - -0.1
4,590 - -0.8
4,590 - -0.2
4,590 - +1.4
4,590 - +0.0
4,611 + -0.0
4,611 + +0.6
4,611 + -0.4
4,611 + -0.2
4,611 + -0.3
4,611 + -0.1
4,611 + +0.0
4,612 - +0.5
4,744 + +0.1
4,744 + +0.3
4,760 + -0.3
4,760 + -0.7
4,760 + +0.0
4,760 + -0.2
4,760 + +0.5
4,760 + -0.1
4,760 + +0.1
4,761 - -0.7
4,761 - +0.3
4,761 - -0.3
4,761 - -1.7
4,761 - -0.2
4,761 - +0.8
4,871 + +0.1
4,872 - +0.8
4,872 - -0.1
4,930 - +0.6
5,162 + EX31_RS14565 0.19 +0.0
5,169 + EX31_RS14565 0.20 -1.0
5,170 - EX31_RS14565 0.20 -0.0
5,170 - EX31_RS14565 0.20 +0.0
5,170 - EX31_RS14565 0.20 +0.3
5,214 + EX31_RS14565 0.22 +0.7
5,215 - EX31_RS14565 0.22 -0.3
5,254 - EX31_RS14565 0.24 +0.6
5,373 + EX31_RS14565 0.29 -0.1
5,373 + EX31_RS14565 0.29 -0.4
5,374 - EX31_RS14565 0.29 -2.8
5,374 - EX31_RS14565 0.29 +0.7
5,389 - EX31_RS14565 0.30 -0.1
5,451 + EX31_RS14565 0.33 +0.1
5,451 + EX31_RS14565 0.33 -1.3
5,451 + EX31_RS14565 0.33 +0.6
5,451 + EX31_RS14565 0.33 +0.7
5,452 - EX31_RS14565 0.33 +0.8
5,452 - EX31_RS14565 0.33 -0.3
5,452 - EX31_RS14565 0.33 +0.2
5,452 - EX31_RS14565 0.33 +0.1
5,479 + EX31_RS14565 0.34 +0.2
5,510 + EX31_RS14565 0.35 -0.3

Or see this region's nucleotide sequence