Strain Fitness in Rahnella sp. WP5 around EX31_RS10820

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10815 and EX31_RS10820 are separated by 118 nucleotidesEX31_RS10820 and EX31_RS10825 are separated by 177 nucleotidesEX31_RS10825 and EX31_RS10830 are separated by 102 nucleotides EX31_RS10815: EX31_RS10815 - oxidoreductase, at 84,636 to 85,469 _RS10815 EX31_RS10820: EX31_RS10820 - magnesium/cobalt transporter CorA, at 85,588 to 86,595 _RS10820 EX31_RS10825: EX31_RS10825 - hypothetical protein, at 86,773 to 87,192 _RS10825 EX31_RS10830: EX31_RS10830 - copper-binding protein, at 87,295 to 87,630 _RS10830 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1at 84.635 kb on + strandat 84.789 kb on - strand, within EX31_RS10815at 84.911 kb on + strand, within EX31_RS10815at 85.019 kb on + strand, within EX31_RS10815at 85.028 kb on + strand, within EX31_RS10815at 85.028 kb on + strand, within EX31_RS10815at 85.028 kb on + strand, within EX31_RS10815at 85.029 kb on - strand, within EX31_RS10815at 85.034 kb on + strand, within EX31_RS10815at 85.080 kb on + strand, within EX31_RS10815at 85.081 kb on - strand, within EX31_RS10815at 85.095 kb on - strand, within EX31_RS10815at 85.480 kb on + strandat 85.480 kb on + strandat 85.481 kb on - strandat 85.639 kb on - strandat 85.759 kb on + strand, within EX31_RS10820at 85.759 kb on + strand, within EX31_RS10820at 85.759 kb on + strand, within EX31_RS10820at 85.760 kb on - strand, within EX31_RS10820at 85.761 kb on + strand, within EX31_RS10820at 85.762 kb on - strand, within EX31_RS10820at 85.762 kb on - strand, within EX31_RS10820at 85.762 kb on - strand, within EX31_RS10820at 85.979 kb on - strand, within EX31_RS10820at 86.026 kb on - strand, within EX31_RS10820at 86.026 kb on - strand, within EX31_RS10820at 86.026 kb on - strand, within EX31_RS10820at 86.038 kb on + strand, within EX31_RS10820at 86.038 kb on + strand, within EX31_RS10820at 86.038 kb on + strand, within EX31_RS10820at 86.039 kb on - strand, within EX31_RS10820at 86.047 kb on + strand, within EX31_RS10820at 86.048 kb on - strand, within EX31_RS10820at 86.142 kb on + strand, within EX31_RS10820at 86.173 kb on + strand, within EX31_RS10820at 86.173 kb on + strand, within EX31_RS10820at 86.175 kb on + strand, within EX31_RS10820at 86.175 kb on + strand, within EX31_RS10820at 86.176 kb on - strand, within EX31_RS10820at 86.176 kb on - strand, within EX31_RS10820at 86.176 kb on - strand, within EX31_RS10820at 86.229 kb on + strand, within EX31_RS10820at 86.230 kb on - strand, within EX31_RS10820at 86.230 kb on - strand, within EX31_RS10820at 86.230 kb on - strand, within EX31_RS10820at 86.255 kb on - strand, within EX31_RS10820at 86.287 kb on + strand, within EX31_RS10820at 86.288 kb on - strand, within EX31_RS10820at 86.470 kb on + strand, within EX31_RS10820at 86.561 kb on + strandat 86.564 kb on - strandat 86.626 kb on + strandat 86.627 kb on - strandat 86.653 kb on + strandat 86.734 kb on - strandat 86.734 kb on - strandat 86.734 kb on - strandat 86.734 kb on - strandat 86.735 kb on + strandat 86.765 kb on + strandat 86.943 kb on + strand, within EX31_RS10825at 86.943 kb on + strand, within EX31_RS10825at 86.944 kb on - strand, within EX31_RS10825at 87.226 kb on + strandat 87.252 kb on + strandat 87.270 kb on + strandat 87.279 kb on + strandat 87.381 kb on + strand, within EX31_RS10830at 87.384 kb on + strand, within EX31_RS10830at 87.384 kb on + strand, within EX31_RS10830at 87.400 kb on - strand, within EX31_RS10830at 87.402 kb on + strand, within EX31_RS10830at 87.413 kb on - strand, within EX31_RS10830

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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84,635 + +0.3
84,789 - EX31_RS10815 0.18 -0.5
84,911 + EX31_RS10815 0.33 -0.6
85,019 + EX31_RS10815 0.46 -0.8
85,028 + EX31_RS10815 0.47 +0.3
85,028 + EX31_RS10815 0.47 +0.6
85,028 + EX31_RS10815 0.47 -0.5
85,029 - EX31_RS10815 0.47 -0.3
85,034 + EX31_RS10815 0.48 +0.2
85,080 + EX31_RS10815 0.53 -0.5
85,081 - EX31_RS10815 0.53 +0.4
85,095 - EX31_RS10815 0.55 -0.5
85,480 + -0.4
85,480 + -0.2
85,481 - -0.6
85,639 - -0.4
85,759 + EX31_RS10820 0.17 -1.9
85,759 + EX31_RS10820 0.17 -0.4
85,759 + EX31_RS10820 0.17 +0.6
85,760 - EX31_RS10820 0.17 +0.1
85,761 + EX31_RS10820 0.17 +1.1
85,762 - EX31_RS10820 0.17 -2.7
85,762 - EX31_RS10820 0.17 -0.9
85,762 - EX31_RS10820 0.17 +0.2
85,979 - EX31_RS10820 0.39 -0.8
86,026 - EX31_RS10820 0.43 +0.7
86,026 - EX31_RS10820 0.43 -0.6
86,026 - EX31_RS10820 0.43 +1.2
86,038 + EX31_RS10820 0.45 -0.7
86,038 + EX31_RS10820 0.45 -0.2
86,038 + EX31_RS10820 0.45 -0.1
86,039 - EX31_RS10820 0.45 -2.2
86,047 + EX31_RS10820 0.46 -1.6
86,048 - EX31_RS10820 0.46 -0.9
86,142 + EX31_RS10820 0.55 -0.6
86,173 + EX31_RS10820 0.58 -1.3
86,173 + EX31_RS10820 0.58 -1.7
86,175 + EX31_RS10820 0.58 +0.1
86,175 + EX31_RS10820 0.58 +1.5
86,176 - EX31_RS10820 0.58 +1.2
86,176 - EX31_RS10820 0.58 -1.2
86,176 - EX31_RS10820 0.58 -0.5
86,229 + EX31_RS10820 0.64 -0.2
86,230 - EX31_RS10820 0.64 -2.4
86,230 - EX31_RS10820 0.64 +0.6
86,230 - EX31_RS10820 0.64 +0.5
86,255 - EX31_RS10820 0.66 -0.3
86,287 + EX31_RS10820 0.69 -0.3
86,288 - EX31_RS10820 0.69 +0.3
86,470 + EX31_RS10820 0.88 -2.1
86,561 + +0.7
86,564 - -0.3
86,626 + -0.4
86,627 - -0.5
86,653 + -1.4
86,734 - +0.1
86,734 - -0.2
86,734 - +0.3
86,734 - +0.1
86,735 + -0.9
86,765 + -0.5
86,943 + EX31_RS10825 0.40 -0.4
86,943 + EX31_RS10825 0.40 -1.0
86,944 - EX31_RS10825 0.41 -2.5
87,226 + +0.8
87,252 + -0.4
87,270 + +0.6
87,279 + +0.4
87,381 + EX31_RS10830 0.26 -1.0
87,384 + EX31_RS10830 0.26 -1.0
87,384 + EX31_RS10830 0.26 +0.4
87,400 - EX31_RS10830 0.31 +0.1
87,402 + EX31_RS10830 0.32 +0.3
87,413 - EX31_RS10830 0.35 -0.6

Or see this region's nucleotide sequence