Strain Fitness in Rahnella sp. WP5 around EX31_RS05095

Experiment: NL-CCM; ambient oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; ambient oxygen
151,447	+		EX31_RS05090	0.15	-0.1
151,447	+		EX31_RS05090	0.15	-0.3
151,447	+		EX31_RS05090	0.15	-0.2
151,448	-		EX31_RS05090	0.16	+0.8
151,472	+		EX31_RS05090	0.19	+0.8
151,472	+		EX31_RS05090	0.19	-1.0
151,473	-		EX31_RS05090	0.19	+0.1
151,473	-		EX31_RS05090	0.19	-1.3
151,512	+		EX31_RS05090	0.25	-0.5
151,513	-		EX31_RS05090	0.25	+0.3
151,513	-		EX31_RS05090	0.25	+0.3
151,607	+		EX31_RS05090	0.38	+0.3
151,706	-		EX31_RS05090	0.53	+1.0
151,725	+		EX31_RS05090	0.55	+0.1
151,725	+		EX31_RS05090	0.55	-1.3
151,725	+		EX31_RS05090	0.55	-0.2
151,725	+		EX31_RS05090	0.55	-0.6
151,726	-		EX31_RS05090	0.55	-1.0
151,726	-		EX31_RS05090	0.55	-0.5
151,726	-		EX31_RS05090	0.55	-0.2
151,726	-		EX31_RS05090	0.55	+0.2
151,726	-		EX31_RS05090	0.55	-1.0
151,760	-		EX31_RS05090	0.60	-0.5
151,760	-		EX31_RS05090	0.60	+0.3
151,760	-		EX31_RS05090	0.60	+0.2
151,760	-		EX31_RS05090	0.60	+0.6
151,760	-		EX31_RS05090	0.60	+0.2
151,836	+		EX31_RS05090	0.71	-0.4
151,836	+		EX31_RS05090	0.71	-2.3
151,836	+		EX31_RS05090	0.71	-0.5
151,836	+		EX31_RS05090	0.71	+0.7
151,836	+		EX31_RS05090	0.71	-1.4
151,836	+		EX31_RS05090	0.71	-0.2
151,836	+		EX31_RS05090	0.71	-0.1
151,836	+		EX31_RS05090	0.71	-0.8
151,836	+		EX31_RS05090	0.71	-2.2
151,836	+		EX31_RS05090	0.71	-1.3
151,836	+		EX31_RS05090	0.71	-0.7
151,837	-		EX31_RS05090	0.71	-0.4
151,837	-		EX31_RS05090	0.71	-0.3
151,837	-		EX31_RS05090	0.71	-0.2
151,837	-		EX31_RS05090	0.71	-0.1
151,837	-		EX31_RS05090	0.71	+0.1
151,837	-		EX31_RS05090	0.71	+0.2
151,837	-		EX31_RS05090	0.71	-0.6
151,837	-		EX31_RS05090	0.71	-0.7
151,837	-		EX31_RS05090	0.71	+0.3
151,837	-		EX31_RS05090	0.71	+0.7
151,837	-		EX31_RS05090	0.71	+0.7
151,837	-		EX31_RS05090	0.71	+0.3
151,837	-		EX31_RS05090	0.71	+0.2
151,837	-		EX31_RS05090	0.71	-0.3
151,837	-		EX31_RS05090	0.71	+0.5
151,858	+		EX31_RS05090	0.74	-0.5
151,947	+		EX31_RS05090	0.87	-1.0
151,948	-		EX31_RS05090	0.87	+1.3
151,948	-		EX31_RS05090	0.87	+0.8
151,948	-		EX31_RS05090	0.87	+0.1
151,948	-		EX31_RS05090	0.87	+0.0
151,948	-		EX31_RS05090	0.87	+0.2
152,024	+				-0.3
152,029	-				-1.2
152,029	-				-0.2
152,067	-				-0.4
152,067	-				+0.1
152,067	-				+0.2
152,171	+				-0.4
152,171	+				-0.5
152,171	+				+0.7
152,171	+				+0.5
152,185	-				-0.3
152,195	+				-0.2
152,195	+				+0.9
152,195	+				-0.5
152,195	+				-0.6
152,195	+				+0.0
152,195	+				-0.5
152,196	-				-1.5
152,196	-				-0.6
152,196	-				-0.1
152,196	-				+0.3
152,199	+				-0.7
152,200	-				+0.4
152,209	+				-0.1
152,209	+				+0.0
152,209	+				-0.5
152,210	-				+0.4
152,214	+				-0.9
152,214	+				-0.1
152,215	-				-0.9
152,215	-				+0.3
152,234	+				-0.3
152,235	-				+0.1
152,239	+				-0.1
152,240	-				+0.5
152,240	-				+0.1
152,244	+				-0.2
152,244	+				-0.5
152,244	+				-0.5
152,245	-				-0.2
152,245	-				-0.1
152,269	+				-1.6
152,269	+				+0.5
152,269	+				-0.5
152,316	+				+0.0
152,316	+				+0.2
152,316	+				-1.8
152,316	+				-0.2
152,316	+				-0.3
152,317	-				-0.1
152,317	-				-0.2
152,317	-				+0.2
152,331	+				+0.0
152,336	-				+0.1
152,336	-				-1.2
152,351	-				+0.3
152,351	-				-0.2
152,391	+				+0.0
152,444	+				-0.2
152,444	+				-0.2
152,444	+				-0.3
152,444	+				-0.1
152,444	+				+0.5
152,444	+				-1.5
152,444	+				+0.3
152,444	+				-0.4
152,444	+				-0.8
152,444	+				+0.3
152,444	+				-0.1
152,444	+				-0.2
152,444	+				+0.4
152,444	+				+0.2
152,444	+				+0.6
152,445	-				-0.4
152,445	-				-0.3
152,445	-				-0.0
152,445	-				-0.4
152,445	-				-0.5
152,445	-				-1.2
152,445	-				-0.7
152,445	-				-0.9
152,477	+				+0.3
152,562	+		EX31_RS05095	0.14	-1.8
152,562	+		EX31_RS05095	0.14	+0.2
152,563	-		EX31_RS05095	0.14	+0.1
152,566	+		EX31_RS05095	0.14	-0.8
152,566	+		EX31_RS05095	0.14	-0.3
152,567	-		EX31_RS05095	0.14	-0.6
152,567	-		EX31_RS05095	0.14	-0.1
152,567	-		EX31_RS05095	0.14	-1.2
152,567	-		EX31_RS05095	0.14	-0.7
152,598	+		EX31_RS05095	0.15	-0.6
152,598	+		EX31_RS05095	0.15	-0.7
152,598	+		EX31_RS05095	0.15	-0.2
152,598	+		EX31_RS05095	0.15	-0.8
152,598	+		EX31_RS05095	0.15	+0.2
152,598	+		EX31_RS05095	0.15	-0.5
152,598	+		EX31_RS05095	0.15	-0.2
152,599	-		EX31_RS05095	0.16	-0.7
152,599	-		EX31_RS05095	0.16	+0.1
152,599	-		EX31_RS05095	0.16	-0.7
152,599	-		EX31_RS05095	0.16	-0.9
152,599	-		EX31_RS05095	0.16	-0.4
152,599	-		EX31_RS05095	0.16	-0.2
152,602	+		EX31_RS05095	0.16	-0.3
152,603	-		EX31_RS05095	0.16	-0.1
152,603	-		EX31_RS05095	0.16	-1.5
152,603	-		EX31_RS05095	0.16	-1.9
152,677	+		EX31_RS05095	0.19	-0.3
152,677	+		EX31_RS05095	0.19	-1.3
152,677	+		EX31_RS05095	0.19	-0.6
152,677	+		EX31_RS05095	0.19	+0.2
152,677	+		EX31_RS05095	0.19	-0.9
152,677	+		EX31_RS05095	0.19	-0.5
152,677	+		EX31_RS05095	0.19	-0.4
152,677	+		EX31_RS05095	0.19	+0.5
152,677	+		EX31_RS05095	0.19	-0.9
152,677	+		EX31_RS05095	0.19	-0.7
152,678	-		EX31_RS05095	0.19	+0.4
152,678	-		EX31_RS05095	0.19	-1.2
152,678	-		EX31_RS05095	0.19	+0.1
152,678	-		EX31_RS05095	0.19	-0.0
152,678	-		EX31_RS05095	0.19	+0.1
152,711	-		EX31_RS05095	0.21	-1.2
152,791	+		EX31_RS05095	0.25	+0.9
152,792	-		EX31_RS05095	0.25	-1.2
152,792	-		EX31_RS05095	0.25	-0.2
152,795	+		EX31_RS05095	0.25	-0.9
152,795	+		EX31_RS05095	0.25	-0.0
152,795	+		EX31_RS05095	0.25	+0.3
152,796	-		EX31_RS05095	0.25	+0.8
152,826	+		EX31_RS05095	0.26	+0.9
152,827	-		EX31_RS05095	0.26	-0.5
152,827	-		EX31_RS05095	0.26	+0.3
152,847	+		EX31_RS05095	0.27	+0.7
152,848	-		EX31_RS05095	0.27	-0.3
152,910	+		EX31_RS05095	0.30	-0.0
152,910	+		EX31_RS05095	0.30	-0.5
152,910	+		EX31_RS05095	0.30	+0.8
152,910	+		EX31_RS05095	0.30	-0.2
152,910	+		EX31_RS05095	0.30	-0.2
152,910	+		EX31_RS05095	0.30	+0.3
152,910	+		EX31_RS05095	0.30	+0.3
152,910	+		EX31_RS05095	0.30	-0.5
152,910	+		EX31_RS05095	0.30	-0.5
152,910	+		EX31_RS05095	0.30	+0.0
152,910	+		EX31_RS05095	0.30	-1.4
152,910	+		EX31_RS05095	0.30	+0.2
152,910	+		EX31_RS05095	0.30	-0.6
152,910	+		EX31_RS05095	0.30	-0.5
152,910	+		EX31_RS05095	0.30	-0.5
152,910	+		EX31_RS05095	0.30	-0.1
152,910	+		EX31_RS05095	0.30	+0.9
152,910	+		EX31_RS05095	0.30	+0.4
152,911	-		EX31_RS05095	0.30	-0.9
152,911	-		EX31_RS05095	0.30	-0.2
152,911	-		EX31_RS05095	0.30	-0.1
152,911	-		EX31_RS05095	0.30	+0.1
152,911	-		EX31_RS05095	0.30	-0.4
152,911	-		EX31_RS05095	0.30	+0.5
152,911	-		EX31_RS05095	0.30	-0.0
152,911	-		EX31_RS05095	0.30	+0.3
152,911	-		EX31_RS05095	0.30	-0.5
152,911	-		EX31_RS05095	0.30	-0.2
152,911	-		EX31_RS05095	0.30	-0.0
152,911	-		EX31_RS05095	0.30	-0.6
152,911	-		EX31_RS05095	0.30	-0.4
152,911	-		EX31_RS05095	0.30	-0.4
152,912	+		EX31_RS05095	0.30	-0.6
152,912	+		EX31_RS05095	0.30	+0.1
152,912	+		EX31_RS05095	0.30	-0.2
152,913	-		EX31_RS05095	0.31	-0.3
152,913	-		EX31_RS05095	0.31	+0.6
152,913	-		EX31_RS05095	0.31	-1.2
152,913	-		EX31_RS05095	0.31	-0.9
152,930	+		EX31_RS05095	0.31	-0.6
152,930	+		EX31_RS05095	0.31	+0.9
152,930	+		EX31_RS05095	0.31	+0.5
152,930	+		EX31_RS05095	0.31	-0.6
152,931	-		EX31_RS05095	0.31	-0.8
152,931	-		EX31_RS05095	0.31	-1.1
152,976	+		EX31_RS05095	0.34	-0.4
152,976	+		EX31_RS05095	0.34	+0.4
152,976	+		EX31_RS05095	0.34	+0.2
152,977	-		EX31_RS05095	0.34	+0.1
152,977	-		EX31_RS05095	0.34	-0.5
153,002	+		EX31_RS05095	0.35	-0.5
153,003	-		EX31_RS05095	0.35	+0.5
153,003	-		EX31_RS05095	0.35	+0.3
153,003	-		EX31_RS05095	0.35	+0.7
153,003	-		EX31_RS05095	0.35	+1.0
153,003	-		EX31_RS05095	0.35	+0.5
153,003	-		EX31_RS05095	0.35	-0.1
153,003	-		EX31_RS05095	0.35	-0.7
153,019	+		EX31_RS05095	0.36	-0.9
153,020	-		EX31_RS05095	0.36	+0.2
153,032	+		EX31_RS05095	0.36	-0.3
153,033	-		EX31_RS05095	0.36	+0.2
153,033	-		EX31_RS05095	0.36	-0.9
153,033	-		EX31_RS05095	0.36	+0.2
153,033	-		EX31_RS05095	0.36	-0.0
153,033	-		EX31_RS05095	0.36	-0.3
153,107	-		EX31_RS05095	0.40	-0.9
153,122	+		EX31_RS05095	0.40	-0.4
153,122	+		EX31_RS05095	0.40	-0.2
153,122	+		EX31_RS05095	0.40	-0.5
153,122	+		EX31_RS05095	0.40	+0.5
153,122	+		EX31_RS05095	0.40	+0.7
153,122	+		EX31_RS05095	0.40	-0.3
153,122	+		EX31_RS05095	0.40	-2.1
153,122	+		EX31_RS05095	0.40	-0.5
153,122	+		EX31_RS05095	0.40	-0.4
153,122	+		EX31_RS05095	0.40	+0.0
153,123	-		EX31_RS05095	0.41	-0.3
153,123	-		EX31_RS05095	0.41	+0.1
153,123	-		EX31_RS05095	0.41	+0.5
153,123	-		EX31_RS05095	0.41	-0.1
153,123	-		EX31_RS05095	0.41	+0.6
153,123	-		EX31_RS05095	0.41	-1.3
153,123	-		EX31_RS05095	0.41	+0.0
153,123	-		EX31_RS05095	0.41	-0.8
153,123	-		EX31_RS05095	0.41	-1.9
153,123	-		EX31_RS05095	0.41	-0.8
153,148	+		EX31_RS05095	0.42	-0.2
153,149	-		EX31_RS05095	0.42	+0.6
153,149	-		EX31_RS05095	0.42	+0.3
153,177	-		EX31_RS05095	0.43	+0.2
153,177	-		EX31_RS05095	0.43	-0.4
153,185	+		EX31_RS05095	0.43	-0.6
153,185	+		EX31_RS05095	0.43	-0.3
153,186	-		EX31_RS05095	0.44	+1.3
153,186	-		EX31_RS05095	0.44	+0.0
153,284	-		EX31_RS05095	0.48	+0.6
153,317	+		EX31_RS05095	0.50	-0.3
153,317	+		EX31_RS05095	0.50	-0.9
153,345	-		EX31_RS05095	0.51	+0.0
153,356	-		EX31_RS05095	0.52	-0.2
153,356	-		EX31_RS05095	0.52	-0.3
153,364	+		EX31_RS05095	0.52	-0.1
153,364	+		EX31_RS05095	0.52	-0.0
153,477	-		EX31_RS05095	0.57	-0.0
153,477	-		EX31_RS05095	0.57	+0.3
153,477	-		EX31_RS05095	0.57	-0.2
153,496	+		EX31_RS05095	0.58	-0.3
153,562	+		EX31_RS05095	0.61	-1.1
153,562	+		EX31_RS05095	0.61	-0.0
153,562	+		EX31_RS05095	0.61	+1.2
153,562	+		EX31_RS05095	0.61	+0.2
153,562	+		EX31_RS05095	0.61	-0.9
153,562	+		EX31_RS05095	0.61	+0.7
153,562	+		EX31_RS05095	0.61	-0.8
153,562	+		EX31_RS05095	0.61	-0.4
153,562	+		EX31_RS05095	0.61	-0.6
153,562	+		EX31_RS05095	0.61	-0.4
153,562	+		EX31_RS05095	0.61	+0.4
153,563	-		EX31_RS05095	0.62	-0.7
153,563	-		EX31_RS05095	0.62	-0.5
153,563	-		EX31_RS05095	0.62	+0.1
153,563	-		EX31_RS05095	0.62	-0.2
153,563	-		EX31_RS05095	0.62	-1.9
153,563	-		EX31_RS05095	0.62	-0.0
153,563	-		EX31_RS05095	0.62	-0.3
153,563	-		EX31_RS05095	0.62	-0.0
153,563	-		EX31_RS05095	0.62	-0.2
153,563	-		EX31_RS05095	0.62	-0.2
153,563	-		EX31_RS05095	0.62	+0.3
153,563	-		EX31_RS05095	0.62	-0.2
153,563	-		EX31_RS05095	0.62	-1.1
153,563	-		EX31_RS05095	0.62	-0.3
153,563	-		EX31_RS05095	0.62	+0.1
153,563	-		EX31_RS05095	0.62	-0.0
153,563	-		EX31_RS05095	0.62	+0.1
153,589	+		EX31_RS05095	0.63	-0.9
153,589	+		EX31_RS05095	0.63	+0.9
153,589	+		EX31_RS05095	0.63	-0.2
153,589	+		EX31_RS05095	0.63	-0.1
153,590	-		EX31_RS05095	0.63	+0.2
153,590	-		EX31_RS05095	0.63	-0.4
153,590	-		EX31_RS05095	0.63	-0.1
153,590	-		EX31_RS05095	0.63	-0.1
153,664	+		EX31_RS05095	0.66	-0.5
153,665	-		EX31_RS05095	0.66	-0.2
153,665	-		EX31_RS05095	0.66	+1.2
153,675	+		EX31_RS05095	0.67	-0.3
153,739	-		EX31_RS05095	0.70	-0.1
153,760	+		EX31_RS05095	0.71	-0.2
153,774	+		EX31_RS05095	0.72	-0.4
153,795	+		EX31_RS05095	0.73	+0.3
153,795	+		EX31_RS05095	0.73	-0.7
153,796	-		EX31_RS05095	0.73	+1.2
153,850	+		EX31_RS05095	0.75	-1.6
153,889	+		EX31_RS05095	0.77	-1.8
153,890	-		EX31_RS05095	0.77	+0.1
153,908	+		EX31_RS05095	0.78	-0.6
153,958	-		EX31_RS05095	0.80	-1.9
153,961	+		EX31_RS05095	0.80	-1.0
153,961	+		EX31_RS05095	0.80	-1.1
153,962	-		EX31_RS05095	0.81	-0.5
154,013	-		EX31_RS05095	0.83	-0.2
154,013	-		EX31_RS05095	0.83	+0.4
154,018	-		EX31_RS05095	0.83	+0.3
154,049	-		EX31_RS05095	0.85	-1.0
154,132	-		EX31_RS05095	0.89	-1.1
154,174	+				+0.1
154,174	+				+0.5
154,174	+				-0.1
154,174	+				-0.4
154,174	+				-0.7
154,175	-				-0.4
154,184	-				-0.4
154,184	-				-1.4
154,195	+				-0.2
154,195	+				+0.4
154,195	+				-0.3
154,196	-				-0.3
154,196	-				-0.9
154,196	-				+0.3
154,196	-				-0.7
154,202	+				-0.5
154,235	-				+0.6
154,253	-				-0.6
154,253	-				+1.1
154,294	+				+0.3
154,294	+				+0.7
154,302	+				+0.0
154,302	+				-1.7
154,302	+				-0.0
154,303	-				-1.0
154,343	-				-0.4
154,365	+				+0.5
154,365	+				-0.0
154,365	+				+0.2
154,365	+				+0.3
154,365	+				-0.5
154,366	-				-0.6
154,367	+				+0.1
154,367	+				-0.0
154,367	+				+0.5
154,368	-				+0.8
154,368	-				-0.9
154,399	-				-1.2
154,399	-				-0.8
154,432	+				+0.2
154,451	+				-0.9
154,451	+				-0.3
154,456	+				-0.8
154,456	+				+0.1
154,456	+				+0.2
154,456	+				+0.9
154,457	-				-0.6
154,457	-				+0.2
154,457	-				-0.3
154,457	-				+0.3
154,457	-				-1.1
154,469	+				-0.1
154,469	+				+0.1
154,469	+				-1.5
154,470	-				-1.0
154,470	-				-0.7
154,470	-				+0.1
154,470	-				-0.2
154,488	+				-0.3
154,488	+				+0.3
154,522	-				-0.9
154,687	+		EX31_RS05100	0.15	-0.3
154,687	+		EX31_RS05100	0.15	-0.6
154,688	-		EX31_RS05100	0.15	-0.2
154,925	+		EX31_RS05100	0.28	+0.0
154,926	-		EX31_RS05100	0.28	+0.7
154,972	-		EX31_RS05100	0.30	-0.1
154,972	-		EX31_RS05100	0.30	-0.3
154,972	-		EX31_RS05100	0.30	-0.3
155,074	-		EX31_RS05100	0.36	-0.4
155,076	+		EX31_RS05100	0.36	+0.8
155,076	+		EX31_RS05100	0.36	+1.1
155,076	+		EX31_RS05100	0.36	+0.1
155,076	+		EX31_RS05100	0.36	-0.7
155,076	+		EX31_RS05100	0.36	+0.0
155,076	+		EX31_RS05100	0.36	+0.4
155,076	+		EX31_RS05100	0.36	-1.0
155,077	-		EX31_RS05100	0.36	+0.1
155,077	-		EX31_RS05100	0.36	+0.1
155,077	-		EX31_RS05100	0.36	-0.2
155,077	-		EX31_RS05100	0.36	+0.2
155,077	-		EX31_RS05100	0.36	+0.1
155,077	-		EX31_RS05100	0.36	-0.2
155,077	-		EX31_RS05100	0.36	-1.8
155,077	-		EX31_RS05100	0.36	+0.2
155,077	-		EX31_RS05100	0.36	+0.4
155,077	-		EX31_RS05100	0.36	-1.0
155,156	+		EX31_RS05100	0.40	-0.0
155,156	+		EX31_RS05100	0.40	+0.8
155,157	-		EX31_RS05100	0.40	-0.4
155,157	-		EX31_RS05100	0.40	+0.7
155,226	+		EX31_RS05100	0.44	+0.9
155,226	+		EX31_RS05100	0.44	-0.1
155,227	-		EX31_RS05100	0.44	-0.9
155,227	-		EX31_RS05100	0.44	-0.5
155,227	-		EX31_RS05100	0.44	+0.2
155,291	+		EX31_RS05100	0.47	-0.4
155,291	+		EX31_RS05100	0.47	-0.1
155,324	+		EX31_RS05100	0.49	+0.2
155,324	+		EX31_RS05100	0.49	-0.2
155,325	-		EX31_RS05100	0.49	-0.3