Strain Fitness in Rahnella sp. WP5 around EX31_RS04040

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS04035 and EX31_RS04040 are separated by 234 nucleotidesEX31_RS04040 and EX31_RS04045 are separated by 1 nucleotides EX31_RS04035: EX31_RS04035 - phosphoserine phosphatase, at 329,168 to 330,133 _RS04035 EX31_RS04040: EX31_RS04040 - YtjB family periplasmic protein, at 330,368 to 331,156 _RS04040 EX31_RS04045: EX31_RS04045 - type II toxin-antitoxin system HipA family toxin YjjJ, at 331,158 to 332,504 _RS04045 Position (kb) 330 331 332Strain fitness (log2 ratio) -3 -2 -1 0 1at 329.376 kb on + strand, within EX31_RS04035at 329.376 kb on + strand, within EX31_RS04035at 329.377 kb on + strand, within EX31_RS04035at 329.378 kb on - strand, within EX31_RS04035at 329.378 kb on - strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.386 kb on + strand, within EX31_RS04035at 329.388 kb on + strand, within EX31_RS04035at 329.388 kb on + strand, within EX31_RS04035at 329.388 kb on + strand, within EX31_RS04035at 329.388 kb on + strand, within EX31_RS04035at 329.389 kb on - strand, within EX31_RS04035at 329.389 kb on - strand, within EX31_RS04035at 329.389 kb on - strand, within EX31_RS04035at 329.389 kb on - strand, within EX31_RS04035at 329.389 kb on - strand, within EX31_RS04035at 329.389 kb on - strand, within EX31_RS04035at 329.431 kb on + strand, within EX31_RS04035at 329.493 kb on + strand, within EX31_RS04035at 329.503 kb on - strand, within EX31_RS04035at 329.503 kb on - strand, within EX31_RS04035at 329.505 kb on + strand, within EX31_RS04035at 329.505 kb on + strand, within EX31_RS04035at 329.505 kb on + strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.506 kb on - strand, within EX31_RS04035at 329.509 kb on + strand, within EX31_RS04035at 329.509 kb on + strand, within EX31_RS04035at 329.509 kb on + strand, within EX31_RS04035at 329.774 kb on - strand, within EX31_RS04035at 329.870 kb on + strand, within EX31_RS04035at 329.870 kb on + strand, within EX31_RS04035at 329.870 kb on + strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.871 kb on - strand, within EX31_RS04035at 329.881 kb on + strand, within EX31_RS04035at 329.910 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.974 kb on + strand, within EX31_RS04035at 329.975 kb on - strand, within EX31_RS04035at 329.975 kb on - strand, within EX31_RS04035at 329.975 kb on - strand, within EX31_RS04035at 329.975 kb on - strand, within EX31_RS04035at 329.977 kb on + strand, within EX31_RS04035at 329.977 kb on + strand, within EX31_RS04035at 329.977 kb on + strand, within EX31_RS04035at 329.978 kb on - strand, within EX31_RS04035at 329.978 kb on - strand, within EX31_RS04035at 330.114 kb on + strandat 330.114 kb on + strandat 330.114 kb on + strandat 330.115 kb on - strandat 330.115 kb on - strandat 330.115 kb on - strandat 330.115 kb on - strandat 330.161 kb on + strandat 330.174 kb on + strandat 330.184 kb on + strandat 330.185 kb on - strandat 330.185 kb on - strandat 330.259 kb on - strandat 330.260 kb on + strandat 330.260 kb on + strandat 330.261 kb on - strandat 330.261 kb on - strandat 330.310 kb on + strandat 330.310 kb on + strandat 330.310 kb on + strandat 330.310 kb on + strandat 330.310 kb on + strandat 330.310 kb on + strandat 330.311 kb on - strandat 330.320 kb on + strandat 330.320 kb on + strandat 330.320 kb on + strandat 330.321 kb on - strandat 330.338 kb on + strandat 330.338 kb on + strandat 330.338 kb on + strandat 330.338 kb on + strandat 330.339 kb on - strandat 330.339 kb on - strandat 330.339 kb on - strandat 330.339 kb on - strandat 330.352 kb on + strandat 330.352 kb on + strandat 330.352 kb on + strandat 330.353 kb on - strandat 330.353 kb on - strandat 330.461 kb on + strand, within EX31_RS04040at 330.462 kb on - strand, within EX31_RS04040at 330.601 kb on + strand, within EX31_RS04040at 330.616 kb on + strand, within EX31_RS04040at 330.617 kb on - strand, within EX31_RS04040at 330.651 kb on - strand, within EX31_RS04040at 330.740 kb on + strand, within EX31_RS04040at 330.741 kb on - strand, within EX31_RS04040at 330.741 kb on - strand, within EX31_RS04040at 330.741 kb on - strand, within EX31_RS04040at 330.741 kb on - strand, within EX31_RS04040at 330.741 kb on - strand, within EX31_RS04040at 330.775 kb on + strand, within EX31_RS04040at 330.775 kb on + strand, within EX31_RS04040at 330.776 kb on - strand, within EX31_RS04040at 330.805 kb on + strand, within EX31_RS04040at 330.905 kb on - strand, within EX31_RS04040at 330.905 kb on - strand, within EX31_RS04040at 330.905 kb on - strand, within EX31_RS04040at 330.905 kb on - strand, within EX31_RS04040at 331.124 kb on + strandat 331.125 kb on - strandat 331.176 kb on - strandat 331.247 kb on + strandat 331.257 kb on + strandat 331.257 kb on + strandat 331.317 kb on + strand, within EX31_RS04045at 331.317 kb on + strand, within EX31_RS04045at 331.318 kb on - strand, within EX31_RS04045at 331.338 kb on + strand, within EX31_RS04045at 331.339 kb on - strand, within EX31_RS04045at 331.399 kb on + strand, within EX31_RS04045at 331.399 kb on + strand, within EX31_RS04045at 331.399 kb on + strand, within EX31_RS04045at 331.399 kb on + strand, within EX31_RS04045at 331.399 kb on + strand, within EX31_RS04045at 331.400 kb on - strand, within EX31_RS04045at 331.400 kb on - strand, within EX31_RS04045at 331.400 kb on - strand, within EX31_RS04045at 331.400 kb on - strand, within EX31_RS04045at 331.451 kb on + strand, within EX31_RS04045at 331.452 kb on - strand, within EX31_RS04045at 331.475 kb on + strand, within EX31_RS04045at 331.507 kb on + strand, within EX31_RS04045at 331.508 kb on - strand, within EX31_RS04045at 331.508 kb on - strand, within EX31_RS04045at 331.508 kb on - strand, within EX31_RS04045at 331.541 kb on + strand, within EX31_RS04045at 331.542 kb on - strand, within EX31_RS04045at 331.780 kb on - strand, within EX31_RS04045at 331.780 kb on - strand, within EX31_RS04045at 331.780 kb on - strand, within EX31_RS04045at 331.833 kb on + strand, within EX31_RS04045at 331.834 kb on - strand, within EX31_RS04045at 331.870 kb on + strand, within EX31_RS04045at 331.870 kb on + strand, within EX31_RS04045at 331.870 kb on + strand, within EX31_RS04045at 331.870 kb on + strand, within EX31_RS04045at 331.870 kb on + strand, within EX31_RS04045at 331.871 kb on - strand, within EX31_RS04045at 331.871 kb on - strand, within EX31_RS04045at 331.871 kb on - strand, within EX31_RS04045at 331.883 kb on + strand, within EX31_RS04045at 331.951 kb on + strand, within EX31_RS04045at 331.951 kb on + strand, within EX31_RS04045at 331.951 kb on + strand, within EX31_RS04045at 331.951 kb on + strand, within EX31_RS04045at 331.952 kb on - strand, within EX31_RS04045at 331.952 kb on - strand, within EX31_RS04045at 331.986 kb on - strand, within EX31_RS04045at 332.015 kb on - strand, within EX31_RS04045at 332.015 kb on - strand, within EX31_RS04045at 332.102 kb on + strand, within EX31_RS04045at 332.102 kb on + strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.103 kb on - strand, within EX31_RS04045at 332.133 kb on - strand, within EX31_RS04045at 332.135 kb on + strand, within EX31_RS04045at 332.136 kb on - strand, within EX31_RS04045at 332.136 kb on - strand, within EX31_RS04045

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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329,376 + EX31_RS04035 0.22 -1.2
329,376 + EX31_RS04035 0.22 -0.5
329,377 + EX31_RS04035 0.22 -1.1
329,378 - EX31_RS04035 0.22 -0.9
329,378 - EX31_RS04035 0.22 -1.2
329,386 + EX31_RS04035 0.23 -0.7
329,386 + EX31_RS04035 0.23 -0.2
329,386 + EX31_RS04035 0.23 -2.0
329,386 + EX31_RS04035 0.23 -2.7
329,386 + EX31_RS04035 0.23 -1.6
329,386 + EX31_RS04035 0.23 +0.4
329,386 + EX31_RS04035 0.23 -1.8
329,388 + EX31_RS04035 0.23 -0.2
329,388 + EX31_RS04035 0.23 -1.6
329,388 + EX31_RS04035 0.23 -2.7
329,388 + EX31_RS04035 0.23 -1.9
329,389 - EX31_RS04035 0.23 -0.4
329,389 - EX31_RS04035 0.23 -1.1
329,389 - EX31_RS04035 0.23 -0.8
329,389 - EX31_RS04035 0.23 -1.0
329,389 - EX31_RS04035 0.23 -0.9
329,389 - EX31_RS04035 0.23 -1.4
329,431 + EX31_RS04035 0.27 -1.0
329,493 + EX31_RS04035 0.34 -1.7
329,503 - EX31_RS04035 0.35 -0.7
329,503 - EX31_RS04035 0.35 -0.4
329,505 + EX31_RS04035 0.35 -0.7
329,505 + EX31_RS04035 0.35 -0.3
329,505 + EX31_RS04035 0.35 -2.6
329,506 - EX31_RS04035 0.35 -0.6
329,506 - EX31_RS04035 0.35 -1.3
329,506 - EX31_RS04035 0.35 -1.1
329,506 - EX31_RS04035 0.35 -0.1
329,506 - EX31_RS04035 0.35 -0.6
329,506 - EX31_RS04035 0.35 -0.9
329,506 - EX31_RS04035 0.35 -1.7
329,506 - EX31_RS04035 0.35 -0.2
329,506 - EX31_RS04035 0.35 -1.0
329,506 - EX31_RS04035 0.35 -0.3
329,506 - EX31_RS04035 0.35 +0.4
329,506 - EX31_RS04035 0.35 -0.4
329,509 + EX31_RS04035 0.35 -1.9
329,509 + EX31_RS04035 0.35 -0.7
329,509 + EX31_RS04035 0.35 -1.7
329,774 - EX31_RS04035 0.63 -2.0
329,870 + EX31_RS04035 0.73 -0.5
329,870 + EX31_RS04035 0.73 -3.3
329,870 + EX31_RS04035 0.73 -1.5
329,871 - EX31_RS04035 0.73 -2.5
329,871 - EX31_RS04035 0.73 -2.9
329,871 - EX31_RS04035 0.73 -0.7
329,871 - EX31_RS04035 0.73 +0.4
329,871 - EX31_RS04035 0.73 -0.2
329,871 - EX31_RS04035 0.73 -0.4
329,871 - EX31_RS04035 0.73 -1.7
329,881 + EX31_RS04035 0.74 -1.6
329,910 + EX31_RS04035 0.77 -2.8
329,974 + EX31_RS04035 0.83 -0.0
329,974 + EX31_RS04035 0.83 -1.7
329,974 + EX31_RS04035 0.83 -0.9
329,974 + EX31_RS04035 0.83 -1.0
329,974 + EX31_RS04035 0.83 -0.2
329,974 + EX31_RS04035 0.83 -2.4
329,974 + EX31_RS04035 0.83 -0.6
329,974 + EX31_RS04035 0.83 -1.1
329,974 + EX31_RS04035 0.83 -0.7
329,974 + EX31_RS04035 0.83 -1.5
329,974 + EX31_RS04035 0.83 +0.9
329,974 + EX31_RS04035 0.83 +0.0
329,975 - EX31_RS04035 0.84 -0.7
329,975 - EX31_RS04035 0.84 -0.7
329,975 - EX31_RS04035 0.84 -1.0
329,975 - EX31_RS04035 0.84 -2.1
329,977 + EX31_RS04035 0.84 -0.6
329,977 + EX31_RS04035 0.84 +0.4
329,977 + EX31_RS04035 0.84 -1.7
329,978 - EX31_RS04035 0.84 -2.1
329,978 - EX31_RS04035 0.84 -2.4
330,114 + -0.2
330,114 + -0.8
330,114 + -2.7
330,115 - -1.1
330,115 - +0.1
330,115 - -0.9
330,115 - +0.7
330,161 + -2.7
330,174 + -1.9
330,184 + -0.3
330,185 - +0.8
330,185 - -0.0
330,259 - +0.8
330,260 + +0.4
330,260 + -0.7
330,261 - +0.7
330,261 - +0.3
330,310 + -1.0
330,310 + -0.1
330,310 + -0.5
330,310 + -1.7
330,310 + +0.4
330,310 + -0.4
330,311 - +0.3
330,320 + +0.0
330,320 + -0.3
330,320 + -0.5
330,321 - +0.0
330,338 + -0.3
330,338 + -0.3
330,338 + +0.6
330,338 + +0.2
330,339 - +1.1
330,339 - -0.5
330,339 - -0.4
330,339 - -0.2
330,352 + +0.7
330,352 + -0.0
330,352 + -0.8
330,353 - -0.1
330,353 - +0.1
330,461 + EX31_RS04040 0.12 -1.4
330,462 - EX31_RS04040 0.12 +0.2
330,601 + EX31_RS04040 0.30 -0.9
330,616 + EX31_RS04040 0.31 -0.9
330,617 - EX31_RS04040 0.32 -0.3
330,651 - EX31_RS04040 0.36 -0.1
330,740 + EX31_RS04040 0.47 -0.1
330,741 - EX31_RS04040 0.47 -0.4
330,741 - EX31_RS04040 0.47 -0.2
330,741 - EX31_RS04040 0.47 +0.6
330,741 - EX31_RS04040 0.47 +0.2
330,741 - EX31_RS04040 0.47 -1.6
330,775 + EX31_RS04040 0.52 -0.2
330,775 + EX31_RS04040 0.52 -0.2
330,776 - EX31_RS04040 0.52 -1.7
330,805 + EX31_RS04040 0.55 -0.6
330,905 - EX31_RS04040 0.68 -0.1
330,905 - EX31_RS04040 0.68 -0.7
330,905 - EX31_RS04040 0.68 -1.2
330,905 - EX31_RS04040 0.68 -0.3
331,124 + -0.0
331,125 - -0.2
331,176 - -0.3
331,247 + -0.5
331,257 + -1.2
331,257 + -0.4
331,317 + EX31_RS04045 0.12 -0.7
331,317 + EX31_RS04045 0.12 -1.0
331,318 - EX31_RS04045 0.12 +0.3
331,338 + EX31_RS04045 0.13 +1.1
331,339 - EX31_RS04045 0.13 +0.8
331,399 + EX31_RS04045 0.18 +0.7
331,399 + EX31_RS04045 0.18 -0.3
331,399 + EX31_RS04045 0.18 +0.2
331,399 + EX31_RS04045 0.18 -2.2
331,399 + EX31_RS04045 0.18 -0.2
331,400 - EX31_RS04045 0.18 +0.4
331,400 - EX31_RS04045 0.18 +0.3
331,400 - EX31_RS04045 0.18 +0.7
331,400 - EX31_RS04045 0.18 +0.1
331,451 + EX31_RS04045 0.22 -1.4
331,452 - EX31_RS04045 0.22 +0.8
331,475 + EX31_RS04045 0.24 -1.3
331,507 + EX31_RS04045 0.26 +0.3
331,508 - EX31_RS04045 0.26 +0.4
331,508 - EX31_RS04045 0.26 +0.9
331,508 - EX31_RS04045 0.26 -0.0
331,541 + EX31_RS04045 0.28 -1.3
331,542 - EX31_RS04045 0.29 +0.7
331,780 - EX31_RS04045 0.46 +0.4
331,780 - EX31_RS04045 0.46 +1.4
331,780 - EX31_RS04045 0.46 +0.3
331,833 + EX31_RS04045 0.50 -2.8
331,834 - EX31_RS04045 0.50 +0.3
331,870 + EX31_RS04045 0.53 -0.2
331,870 + EX31_RS04045 0.53 +0.7
331,870 + EX31_RS04045 0.53 -1.3
331,870 + EX31_RS04045 0.53 -0.1
331,870 + EX31_RS04045 0.53 -3.0
331,871 - EX31_RS04045 0.53 +0.3
331,871 - EX31_RS04045 0.53 +1.7
331,871 - EX31_RS04045 0.53 +1.0
331,883 + EX31_RS04045 0.54 -0.5
331,951 + EX31_RS04045 0.59 +0.3
331,951 + EX31_RS04045 0.59 +0.4
331,951 + EX31_RS04045 0.59 -1.4
331,951 + EX31_RS04045 0.59 -1.8
331,952 - EX31_RS04045 0.59 -1.0
331,952 - EX31_RS04045 0.59 +0.1
331,986 - EX31_RS04045 0.61 -0.1
332,015 - EX31_RS04045 0.64 +0.6
332,015 - EX31_RS04045 0.64 +0.5
332,102 + EX31_RS04045 0.70 +0.5
332,102 + EX31_RS04045 0.70 -2.0
332,103 - EX31_RS04045 0.70 +0.5
332,103 - EX31_RS04045 0.70 +0.1
332,103 - EX31_RS04045 0.70 +0.6
332,103 - EX31_RS04045 0.70 +0.4
332,103 - EX31_RS04045 0.70 -0.7
332,103 - EX31_RS04045 0.70 +0.8
332,103 - EX31_RS04045 0.70 +0.3
332,103 - EX31_RS04045 0.70 +0.5
332,103 - EX31_RS04045 0.70 +0.4
332,133 - EX31_RS04045 0.72 +0.4
332,135 + EX31_RS04045 0.73 -0.4
332,136 - EX31_RS04045 0.73 +0.6
332,136 - EX31_RS04045 0.73 -0.9

Or see this region's nucleotide sequence