Experiment: NL-CCM; ambient oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS02485 and EX31_RS02490 overlap by 4 nucleotides EX31_RS02490 and EX31_RS02495 overlap by 11 nucleotides EX31_RS02495 and EX31_RS02500 overlap by 17 nucleotides
EX31_RS02485: EX31_RS02485 - hypothetical protein, at 526,956 to 527,807
_RS02485
EX31_RS02490: EX31_RS02490 - 3-oxoacyl-ACP synthase, at 527,804 to 528,751
_RS02490
EX31_RS02495: EX31_RS02495 - cytochrome P450, at 528,741 to 530,057
_RS02495
EX31_RS02500: EX31_RS02500 - LLM class flavin-dependent oxidoreductase, at 530,041 to 531,096
_RS02500
Position (kb) 528
529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 527.831 kb on - strand at 528.003 kb on + strand, within EX31_RS02490 at 528.003 kb on + strand, within EX31_RS02490 at 528.003 kb on + strand, within EX31_RS02490 at 528.003 kb on + strand, within EX31_RS02490 at 528.209 kb on + strand, within EX31_RS02490 at 528.210 kb on - strand, within EX31_RS02490 at 528.270 kb on - strand, within EX31_RS02490 at 528.270 kb on - strand, within EX31_RS02490 at 528.409 kb on + strand, within EX31_RS02490 at 528.409 kb on + strand, within EX31_RS02490 at 528.412 kb on + strand, within EX31_RS02490 at 528.621 kb on + strand, within EX31_RS02490 at 528.670 kb on - strand at 528.849 kb on - strand at 528.849 kb on - strand at 528.974 kb on + strand, within EX31_RS02495 at 529.070 kb on + strand, within EX31_RS02495 at 529.260 kb on - strand, within EX31_RS02495 at 529.260 kb on - strand, within EX31_RS02495 at 529.263 kb on + strand, within EX31_RS02495 at 529.263 kb on + strand, within EX31_RS02495 at 529.263 kb on + strand, within EX31_RS02495 at 529.263 kb on + strand, within EX31_RS02495 at 529.264 kb on - strand, within EX31_RS02495 at 529.264 kb on - strand, within EX31_RS02495 at 529.264 kb on - strand, within EX31_RS02495 at 529.264 kb on - strand, within EX31_RS02495 at 529.523 kb on - strand, within EX31_RS02495 at 529.523 kb on - strand, within EX31_RS02495 at 529.557 kb on + strand, within EX31_RS02495 at 529.724 kb on - strand, within EX31_RS02495 at 529.832 kb on - strand, within EX31_RS02495 at 529.980 kb on - strand at 530.119 kb on + strand at 530.120 kb on - strand at 530.132 kb on + strand at 530.132 kb on + strand at 530.133 kb on - strand at 530.133 kb on - strand at 530.172 kb on + strand, within EX31_RS02500 at 530.172 kb on + strand, within EX31_RS02500 at 530.173 kb on - strand, within EX31_RS02500 at 530.266 kb on - strand, within EX31_RS02500 at 530.422 kb on + strand, within EX31_RS02500 at 530.610 kb on - strand, within EX31_RS02500 at 530.817 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.838 kb on + strand, within EX31_RS02500 at 530.908 kb on + strand, within EX31_RS02500 at 530.908 kb on + strand, within EX31_RS02500 at 530.935 kb on + strand, within EX31_RS02500 at 530.936 kb on - strand, within EX31_RS02500
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen remove 527,831 - -0.5 528,003 + EX31_RS02490 0.21 -0.1 528,003 + EX31_RS02490 0.21 -0.1 528,003 + EX31_RS02490 0.21 -0.5 528,003 + EX31_RS02490 0.21 +0.7 528,209 + EX31_RS02490 0.43 -0.1 528,210 - EX31_RS02490 0.43 -0.4 528,270 - EX31_RS02490 0.49 -0.2 528,270 - EX31_RS02490 0.49 -1.1 528,409 + EX31_RS02490 0.64 -2.4 528,409 + EX31_RS02490 0.64 -2.0 528,412 + EX31_RS02490 0.64 -1.3 528,621 + EX31_RS02490 0.86 -0.5 528,670 - +0.1 528,849 - +0.9 528,849 - +0.7 528,974 + EX31_RS02495 0.18 +0.6 529,070 + EX31_RS02495 0.25 -0.9 529,260 - EX31_RS02495 0.39 -1.2 529,260 - EX31_RS02495 0.39 -0.6 529,263 + EX31_RS02495 0.40 +0.5 529,263 + EX31_RS02495 0.40 -0.5 529,263 + EX31_RS02495 0.40 -0.3 529,263 + EX31_RS02495 0.40 -0.5 529,264 - EX31_RS02495 0.40 -3.0 529,264 - EX31_RS02495 0.40 -1.6 529,264 - EX31_RS02495 0.40 -0.7 529,264 - EX31_RS02495 0.40 +0.2 529,523 - EX31_RS02495 0.59 -1.6 529,523 - EX31_RS02495 0.59 +0.4 529,557 + EX31_RS02495 0.62 -0.2 529,724 - EX31_RS02495 0.75 -0.3 529,832 - EX31_RS02495 0.83 +0.2 529,980 - -2.0 530,119 + -0.6 530,120 - +0.1 530,132 + +0.2 530,132 + +0.5 530,133 - +1.0 530,133 - -2.0 530,172 + EX31_RS02500 0.12 -0.8 530,172 + EX31_RS02500 0.12 +1.3 530,173 - EX31_RS02500 0.12 -0.4 530,266 - EX31_RS02500 0.21 +1.5 530,422 + EX31_RS02500 0.36 -0.8 530,610 - EX31_RS02500 0.54 +0.8 530,817 + EX31_RS02500 0.73 -0.6 530,838 + EX31_RS02500 0.75 -1.7 530,838 + EX31_RS02500 0.75 -0.3 530,838 + EX31_RS02500 0.75 -0.1 530,838 + EX31_RS02500 0.75 -0.4 530,908 + EX31_RS02500 0.82 +0.4 530,908 + EX31_RS02500 0.82 -0.1 530,935 + EX31_RS02500 0.85 -0.5 530,936 - EX31_RS02500 0.85 +0.6
Or see this region's nucleotide sequence