Strain Fitness in Rahnella sp. WP5 around EX31_RS00555

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00545 and EX31_RS00550 are separated by 10 nucleotidesEX31_RS00550 and EX31_RS00555 are separated by 153 nucleotidesEX31_RS00555 and EX31_RS00560 are separated by 3 nucleotides EX31_RS00545: EX31_RS00545 - molybdopterin-dependent oxidoreductase, at 116,536 to 117,339 _RS00545 EX31_RS00550: EX31_RS00550 - cytochrome b/b6 domain-containing protein, at 117,350 to 117,976 _RS00550 EX31_RS00555: EX31_RS00555 - response regulator transcription factor, at 118,130 to 118,852 _RS00555 EX31_RS00560: EX31_RS00560 - HAMP domain-containing histidine kinase, at 118,856 to 120,322 _RS00560 Position (kb) 118 119Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 117.215 kb on - strand, within EX31_RS00545at 117.252 kb on + strand, within EX31_RS00545at 117.457 kb on - strand, within EX31_RS00550at 117.570 kb on + strand, within EX31_RS00550at 117.571 kb on - strand, within EX31_RS00550at 117.594 kb on + strand, within EX31_RS00550at 117.595 kb on - strand, within EX31_RS00550at 117.595 kb on - strand, within EX31_RS00550at 117.603 kb on - strand, within EX31_RS00550at 117.752 kb on - strand, within EX31_RS00550at 117.772 kb on + strand, within EX31_RS00550at 117.772 kb on + strand, within EX31_RS00550at 117.843 kb on + strand, within EX31_RS00550at 117.843 kb on + strand, within EX31_RS00550at 117.844 kb on - strand, within EX31_RS00550at 117.868 kb on + strand, within EX31_RS00550at 117.868 kb on + strand, within EX31_RS00550at 117.869 kb on - strand, within EX31_RS00550at 117.869 kb on - strand, within EX31_RS00550at 117.968 kb on + strandat 117.968 kb on + strandat 117.968 kb on + strandat 117.968 kb on + strandat 117.969 kb on - strandat 117.976 kb on + strandat 118.013 kb on + strandat 118.013 kb on + strandat 118.056 kb on - strandat 118.088 kb on + strandat 118.089 kb on - strandat 118.135 kb on + strandat 118.135 kb on + strandat 118.222 kb on + strand, within EX31_RS00555at 118.357 kb on + strand, within EX31_RS00555at 118.357 kb on + strand, within EX31_RS00555at 118.358 kb on - strand, within EX31_RS00555at 118.369 kb on + strand, within EX31_RS00555at 118.369 kb on + strand, within EX31_RS00555at 118.369 kb on + strand, within EX31_RS00555at 118.370 kb on - strand, within EX31_RS00555at 118.370 kb on - strand, within EX31_RS00555at 118.370 kb on - strand, within EX31_RS00555at 118.433 kb on + strand, within EX31_RS00555at 118.453 kb on + strand, within EX31_RS00555at 118.453 kb on + strand, within EX31_RS00555at 118.514 kb on - strand, within EX31_RS00555at 118.635 kb on - strand, within EX31_RS00555at 118.684 kb on - strand, within EX31_RS00555at 118.715 kb on + strand, within EX31_RS00555at 118.716 kb on - strand, within EX31_RS00555at 118.723 kb on + strand, within EX31_RS00555at 118.739 kb on - strand, within EX31_RS00555at 118.761 kb on + strand, within EX31_RS00555at 118.762 kb on - strand, within EX31_RS00555at 118.850 kb on + strandat 118.850 kb on + strandat 118.851 kb on - strandat 119.020 kb on + strand, within EX31_RS00560at 119.065 kb on + strand, within EX31_RS00560at 119.111 kb on + strand, within EX31_RS00560at 119.111 kb on + strand, within EX31_RS00560at 119.134 kb on + strand, within EX31_RS00560at 119.230 kb on - strand, within EX31_RS00560at 119.231 kb on + strand, within EX31_RS00560at 119.232 kb on - strand, within EX31_RS00560at 119.312 kb on + strand, within EX31_RS00560at 119.312 kb on + strand, within EX31_RS00560at 119.313 kb on - strand, within EX31_RS00560at 119.313 kb on - strand, within EX31_RS00560at 119.313 kb on - strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.318 kb on + strand, within EX31_RS00560at 119.319 kb on - strand, within EX31_RS00560at 119.319 kb on - strand, within EX31_RS00560at 119.319 kb on - strand, within EX31_RS00560at 119.319 kb on - strand, within EX31_RS00560at 119.319 kb on - strand, within EX31_RS00560at 119.342 kb on + strand, within EX31_RS00560at 119.342 kb on + strand, within EX31_RS00560at 119.342 kb on + strand, within EX31_RS00560at 119.342 kb on + strand, within EX31_RS00560at 119.402 kb on - strand, within EX31_RS00560at 119.473 kb on + strand, within EX31_RS00560at 119.473 kb on + strand, within EX31_RS00560at 119.546 kb on - strand, within EX31_RS00560at 119.584 kb on - strand, within EX31_RS00560at 119.677 kb on + strand, within EX31_RS00560at 119.677 kb on + strand, within EX31_RS00560at 119.678 kb on - strand, within EX31_RS00560at 119.721 kb on - strand, within EX31_RS00560at 119.777 kb on + strand, within EX31_RS00560at 119.833 kb on - strand, within EX31_RS00560at 119.833 kb on - strand, within EX31_RS00560

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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117,215 - EX31_RS00545 0.84 +0.0
117,252 + EX31_RS00545 0.89 -1.8
117,457 - EX31_RS00550 0.17 -1.3
117,570 + EX31_RS00550 0.35 -0.5
117,571 - EX31_RS00550 0.35 +0.6
117,594 + EX31_RS00550 0.39 -0.3
117,595 - EX31_RS00550 0.39 -0.2
117,595 - EX31_RS00550 0.39 +0.2
117,603 - EX31_RS00550 0.40 -0.1
117,752 - EX31_RS00550 0.64 -0.4
117,772 + EX31_RS00550 0.67 -1.5
117,772 + EX31_RS00550 0.67 -1.0
117,843 + EX31_RS00550 0.79 +0.8
117,843 + EX31_RS00550 0.79 -1.9
117,844 - EX31_RS00550 0.79 -0.8
117,868 + EX31_RS00550 0.83 +0.6
117,868 + EX31_RS00550 0.83 -0.3
117,869 - EX31_RS00550 0.83 +1.3
117,869 - EX31_RS00550 0.83 +0.7
117,968 + +1.9
117,968 + +0.2
117,968 + +0.7
117,968 + +0.7
117,969 - +0.7
117,976 + -0.5
118,013 + +0.7
118,013 + +1.5
118,056 - -0.1
118,088 + +1.3
118,089 - -0.9
118,135 + +0.2
118,135 + -2.5
118,222 + EX31_RS00555 0.13 +0.5
118,357 + EX31_RS00555 0.31 +0.4
118,357 + EX31_RS00555 0.31 +0.2
118,358 - EX31_RS00555 0.32 +0.4
118,369 + EX31_RS00555 0.33 +1.6
118,369 + EX31_RS00555 0.33 +0.4
118,369 + EX31_RS00555 0.33 +2.3
118,370 - EX31_RS00555 0.33 +0.2
118,370 - EX31_RS00555 0.33 +0.6
118,370 - EX31_RS00555 0.33 -0.9
118,433 + EX31_RS00555 0.42 +1.0
118,453 + EX31_RS00555 0.45 -1.0
118,453 + EX31_RS00555 0.45 -0.6
118,514 - EX31_RS00555 0.53 +0.4
118,635 - EX31_RS00555 0.70 -0.3
118,684 - EX31_RS00555 0.77 -0.8
118,715 + EX31_RS00555 0.81 +0.4
118,716 - EX31_RS00555 0.81 +0.3
118,723 + EX31_RS00555 0.82 +0.9
118,739 - EX31_RS00555 0.84 +0.0
118,761 + EX31_RS00555 0.87 +0.6
118,762 - EX31_RS00555 0.87 +0.3
118,850 + +1.5
118,850 + -1.8
118,851 - -0.2
119,020 + EX31_RS00560 0.11 +0.9
119,065 + EX31_RS00560 0.14 -0.5
119,111 + EX31_RS00560 0.17 +0.7
119,111 + EX31_RS00560 0.17 +0.2
119,134 + EX31_RS00560 0.19 +0.1
119,230 - EX31_RS00560 0.25 +0.0
119,231 + EX31_RS00560 0.26 -0.7
119,232 - EX31_RS00560 0.26 +0.6
119,312 + EX31_RS00560 0.31 -0.9
119,312 + EX31_RS00560 0.31 -2.0
119,313 - EX31_RS00560 0.31 -1.6
119,313 - EX31_RS00560 0.31 -0.5
119,313 - EX31_RS00560 0.31 +0.5
119,318 + EX31_RS00560 0.31 -0.8
119,318 + EX31_RS00560 0.31 -0.6
119,318 + EX31_RS00560 0.31 +0.0
119,318 + EX31_RS00560 0.31 -0.1
119,318 + EX31_RS00560 0.31 -1.1
119,318 + EX31_RS00560 0.31 +0.1
119,318 + EX31_RS00560 0.31 -0.0
119,318 + EX31_RS00560 0.31 -0.6
119,318 + EX31_RS00560 0.31 -1.1
119,318 + EX31_RS00560 0.31 -0.7
119,318 + EX31_RS00560 0.31 +0.5
119,319 - EX31_RS00560 0.32 -2.9
119,319 - EX31_RS00560 0.32 -0.3
119,319 - EX31_RS00560 0.32 +0.5
119,319 - EX31_RS00560 0.32 -1.1
119,319 - EX31_RS00560 0.32 -1.1
119,342 + EX31_RS00560 0.33 -0.1
119,342 + EX31_RS00560 0.33 -0.3
119,342 + EX31_RS00560 0.33 -0.2
119,342 + EX31_RS00560 0.33 +0.2
119,402 - EX31_RS00560 0.37 +0.0
119,473 + EX31_RS00560 0.42 +0.9
119,473 + EX31_RS00560 0.42 +0.6
119,546 - EX31_RS00560 0.47 -0.6
119,584 - EX31_RS00560 0.50 +2.0
119,677 + EX31_RS00560 0.56 +0.2
119,677 + EX31_RS00560 0.56 -0.1
119,678 - EX31_RS00560 0.56 -0.2
119,721 - EX31_RS00560 0.59 +0.9
119,777 + EX31_RS00560 0.63 -0.3
119,833 - EX31_RS00560 0.67 -0.6
119,833 - EX31_RS00560 0.67 -0.5

Or see this region's nucleotide sequence