Strain Fitness in Rahnella sp. WP5 around EX31_RS00225

Experiment: NL-CCM; ambient oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS00215 and EX31_RS00220 are separated by 156 nucleotidesEX31_RS00220 and EX31_RS00225 are separated by 52 nucleotidesEX31_RS00225 and EX31_RS00230 are separated by 56 nucleotides EX31_RS00215: EX31_RS00215 - ketopantoate reductase family protein, at 43,798 to 44,721 _RS00215 EX31_RS00220: EX31_RS00220 - Fic family protein, at 44,878 to 45,651 _RS00220 EX31_RS00225: EX31_RS00225 - ABC transporter permease, at 45,704 to 46,666 _RS00225 EX31_RS00230: EX31_RS00230 - ABC transporter permease, at 46,723 to 47,736 _RS00230 Position (kb) 45 46 47Strain fitness (log2 ratio) -2 -1 0 1 2at 44.737 kb on - strandat 44.737 kb on - strandat 44.767 kb on + strandat 44.841 kb on + strandat 44.841 kb on + strandat 44.842 kb on - strandat 44.842 kb on - strandat 44.842 kb on - strandat 44.844 kb on + strandat 44.844 kb on + strandat 44.845 kb on - strandat 44.899 kb on + strandat 44.900 kb on - strandat 44.905 kb on - strandat 44.905 kb on - strandat 45.009 kb on + strand, within EX31_RS00220at 45.145 kb on + strand, within EX31_RS00220at 45.145 kb on + strand, within EX31_RS00220at 45.146 kb on - strand, within EX31_RS00220at 45.155 kb on + strand, within EX31_RS00220at 45.265 kb on + strand, within EX31_RS00220at 45.266 kb on - strand, within EX31_RS00220at 45.391 kb on + strand, within EX31_RS00220at 45.405 kb on + strand, within EX31_RS00220at 45.532 kb on + strand, within EX31_RS00220at 45.583 kb on - strandat 45.591 kb on + strandat 45.592 kb on - strandat 45.617 kb on + strandat 45.697 kb on + strandat 45.698 kb on - strandat 45.698 kb on - strandat 45.698 kb on - strandat 45.705 kb on + strandat 45.705 kb on + strandat 45.706 kb on - strandat 45.854 kb on - strand, within EX31_RS00225at 45.857 kb on + strand, within EX31_RS00225at 45.958 kb on + strand, within EX31_RS00225at 46.092 kb on + strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.093 kb on - strand, within EX31_RS00225at 46.111 kb on + strand, within EX31_RS00225at 46.111 kb on + strand, within EX31_RS00225at 46.111 kb on + strand, within EX31_RS00225at 46.131 kb on + strand, within EX31_RS00225at 46.192 kb on - strand, within EX31_RS00225at 46.229 kb on - strand, within EX31_RS00225at 46.257 kb on + strand, within EX31_RS00225at 46.257 kb on + strand, within EX31_RS00225at 46.257 kb on + strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.258 kb on - strand, within EX31_RS00225at 46.261 kb on + strand, within EX31_RS00225at 46.294 kb on + strand, within EX31_RS00225at 46.295 kb on - strand, within EX31_RS00225at 46.528 kb on + strand, within EX31_RS00225at 46.553 kb on + strand, within EX31_RS00225at 46.553 kb on + strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.554 kb on - strand, within EX31_RS00225at 46.555 kb on + strand, within EX31_RS00225at 46.555 kb on + strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.556 kb on - strand, within EX31_RS00225at 46.596 kb on - strandat 46.794 kb on + strandat 46.999 kb on + strand, within EX31_RS00230at 47.028 kb on - strand, within EX31_RS00230at 47.028 kb on - strand, within EX31_RS00230at 47.132 kb on + strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.133 kb on - strand, within EX31_RS00230at 47.165 kb on + strand, within EX31_RS00230at 47.165 kb on + strand, within EX31_RS00230at 47.166 kb on - strand, within EX31_RS00230at 47.202 kb on - strand, within EX31_RS00230at 47.337 kb on + strand, within EX31_RS00230at 47.338 kb on - strand, within EX31_RS00230at 47.338 kb on - strand, within EX31_RS00230at 47.415 kb on + strand, within EX31_RS00230

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; ambient oxygen
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44,737 - +0.5
44,737 - -0.1
44,767 + -1.4
44,841 + +0.7
44,841 + +0.3
44,842 - +0.3
44,842 - -0.3
44,842 - -0.6
44,844 + +0.6
44,844 + -0.1
44,845 - -1.3
44,899 + +0.0
44,900 - +0.0
44,905 - -0.8
44,905 - -0.0
45,009 + EX31_RS00220 0.17 -0.9
45,145 + EX31_RS00220 0.34 +0.8
45,145 + EX31_RS00220 0.34 +1.0
45,146 - EX31_RS00220 0.35 +0.0
45,155 + EX31_RS00220 0.36 -0.6
45,265 + EX31_RS00220 0.50 +0.4
45,266 - EX31_RS00220 0.50 +0.5
45,391 + EX31_RS00220 0.66 +0.2
45,405 + EX31_RS00220 0.68 -0.2
45,532 + EX31_RS00220 0.84 +0.4
45,583 - -0.0
45,591 + -0.6
45,592 - -1.5
45,617 + +1.0
45,697 + -0.7
45,698 - +0.0
45,698 - -0.9
45,698 - +0.9
45,705 + -1.1
45,705 + -1.6
45,706 - -1.3
45,854 - EX31_RS00225 0.16 -0.4
45,857 + EX31_RS00225 0.16 +1.2
45,958 + EX31_RS00225 0.26 -0.1
46,092 + EX31_RS00225 0.40 -0.3
46,093 - EX31_RS00225 0.40 +0.2
46,093 - EX31_RS00225 0.40 -0.0
46,093 - EX31_RS00225 0.40 -0.5
46,093 - EX31_RS00225 0.40 +0.3
46,111 + EX31_RS00225 0.42 +0.5
46,111 + EX31_RS00225 0.42 +0.9
46,111 + EX31_RS00225 0.42 -2.2
46,131 + EX31_RS00225 0.44 +0.6
46,192 - EX31_RS00225 0.51 -0.5
46,229 - EX31_RS00225 0.55 -1.0
46,257 + EX31_RS00225 0.57 +0.8
46,257 + EX31_RS00225 0.57 -0.2
46,257 + EX31_RS00225 0.57 -1.3
46,258 - EX31_RS00225 0.58 +0.2
46,258 - EX31_RS00225 0.58 +0.0
46,258 - EX31_RS00225 0.58 -0.2
46,258 - EX31_RS00225 0.58 -0.4
46,258 - EX31_RS00225 0.58 -0.1
46,261 + EX31_RS00225 0.58 -0.5
46,294 + EX31_RS00225 0.61 -0.0
46,295 - EX31_RS00225 0.61 -0.6
46,528 + EX31_RS00225 0.86 -1.0
46,553 + EX31_RS00225 0.88 -0.4
46,553 + EX31_RS00225 0.88 +0.3
46,554 - EX31_RS00225 0.88 +0.4
46,554 - EX31_RS00225 0.88 +0.5
46,554 - EX31_RS00225 0.88 +1.1
46,554 - EX31_RS00225 0.88 +1.0
46,555 + EX31_RS00225 0.88 -0.7
46,555 + EX31_RS00225 0.88 +0.4
46,556 - EX31_RS00225 0.88 +0.2
46,556 - EX31_RS00225 0.88 -0.8
46,556 - EX31_RS00225 0.88 +0.3
46,556 - EX31_RS00225 0.88 +1.9
46,596 - -0.1
46,794 + +0.7
46,999 + EX31_RS00230 0.27 +1.7
47,028 - EX31_RS00230 0.30 -1.5
47,028 - EX31_RS00230 0.30 +0.1
47,132 + EX31_RS00230 0.40 +0.7
47,133 - EX31_RS00230 0.40 +0.5
47,133 - EX31_RS00230 0.40 -0.2
47,133 - EX31_RS00230 0.40 +0.5
47,165 + EX31_RS00230 0.44 -0.8
47,165 + EX31_RS00230 0.44 +1.6
47,166 - EX31_RS00230 0.44 +1.4
47,202 - EX31_RS00230 0.47 +1.9
47,337 + EX31_RS00230 0.61 +0.6
47,338 - EX31_RS00230 0.61 +0.8
47,338 - EX31_RS00230 0.61 -0.5
47,415 + EX31_RS00230 0.68 -0.7

Or see this region's nucleotide sequence