Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS24000 and EX31_RS24005 are separated by 179 nucleotides EX31_RS24005 and EX31_RS24010 are separated by 27 nucleotides EX31_RS24010 and EX31_RS24015 are separated by 603 nucleotides
EX31_RS24000: EX31_RS24000 - MerR family transcriptional regulator, at 567,514 to 568,374
_RS24000
EX31_RS24005: EX31_RS24005 - helix-turn-helix transcriptional regulator, at 568,554 to 569,123
_RS24005
EX31_RS24010: EX31_RS24010 - GNAT family N-acetyltransferase, at 569,151 to 569,687
_RS24010
EX31_RS24015: EX31_RS24015 - ABC transporter permease, at 570,291 to 571,286
_RS24015
Position (kb)
569
570 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 568.158 kb on + strand, within EX31_RS24000 at 568.159 kb on - strand, within EX31_RS24000 at 568.159 kb on - strand, within EX31_RS24000 at 568.374 kb on + strand at 568.374 kb on + strand at 568.374 kb on + strand at 568.374 kb on + strand at 568.374 kb on + strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.375 kb on - strand at 568.395 kb on - strand at 568.395 kb on - strand at 568.395 kb on - strand at 568.395 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.402 kb on - strand at 568.404 kb on - strand at 568.404 kb on - strand at 568.404 kb on - strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.408 kb on + strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.409 kb on - strand at 568.428 kb on - strand at 568.609 kb on + strand at 568.609 kb on + strand at 568.609 kb on + strand at 568.781 kb on + strand, within EX31_RS24005 at 568.782 kb on - strand, within EX31_RS24005 at 568.782 kb on - strand, within EX31_RS24005 at 568.925 kb on + strand, within EX31_RS24005 at 568.925 kb on + strand, within EX31_RS24005 at 568.926 kb on - strand, within EX31_RS24005 at 568.929 kb on + strand, within EX31_RS24005 at 568.929 kb on + strand, within EX31_RS24005 at 568.929 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 568.964 kb on + strand, within EX31_RS24005 at 569.070 kb on + strand at 569.070 kb on + strand at 569.070 kb on + strand at 569.071 kb on - strand at 569.121 kb on + strand at 569.121 kb on + strand at 569.121 kb on + strand at 569.121 kb on + strand at 569.122 kb on - strand at 569.122 kb on - strand at 569.122 kb on - strand at 569.137 kb on + strand at 569.144 kb on + strand at 569.145 kb on - strand at 569.145 kb on - strand at 569.320 kb on + strand, within EX31_RS24010 at 569.320 kb on + strand, within EX31_RS24010 at 569.320 kb on + strand, within EX31_RS24010 at 569.531 kb on + strand, within EX31_RS24010 at 569.531 kb on + strand, within EX31_RS24010 at 569.583 kb on + strand, within EX31_RS24010 at 569.626 kb on - strand, within EX31_RS24010 at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.670 kb on + strand at 569.671 kb on - strand at 569.671 kb on - strand at 569.671 kb on - strand at 569.671 kb on - strand at 569.671 kb on - strand at 569.671 kb on - strand at 569.671 kb on - strand at 569.672 kb on + strand at 569.672 kb on + strand at 569.672 kb on + strand at 569.672 kb on + strand at 569.673 kb on - strand at 569.673 kb on - strand at 569.673 kb on - strand at 570.158 kb on - strand at 570.274 kb on + strand at 570.275 kb on - strand at 570.276 kb on + strand at 570.276 kb on + strand at 570.277 kb on - strand at 570.305 kb on + strand at 570.305 kb on + strand at 570.305 kb on + strand at 570.306 kb on - strand at 570.306 kb on - strand at 570.307 kb on + strand at 570.307 kb on + strand at 570.307 kb on + strand at 570.307 kb on + strand at 570.307 kb on + strand at 570.307 kb on + strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.308 kb on - strand at 570.337 kb on - strand at 570.361 kb on + strand at 570.361 kb on + strand at 570.362 kb on - strand at 570.364 kb on + strand at 570.365 kb on - strand at 570.440 kb on + strand, within EX31_RS24015 at 570.441 kb on - strand, within EX31_RS24015 at 570.441 kb on - strand, within EX31_RS24015 at 570.474 kb on - strand, within EX31_RS24015 at 570.476 kb on - strand, within EX31_RS24015 at 570.589 kb on + strand, within EX31_RS24015 at 570.590 kb on - strand, within EX31_RS24015 at 570.590 kb on - strand, within EX31_RS24015 at 570.661 kb on + strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015 at 570.662 kb on - strand, within EX31_RS24015
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 568,158 + EX31_RS24000 0.75 -1.1 568,159 - EX31_RS24000 0.75 +0.9 568,159 - EX31_RS24000 0.75 +0.8 568,374 + -1.4 568,374 + -1.6 568,374 + -0.6 568,374 + -0.3 568,374 + +0.3 568,375 - -0.3 568,375 - -0.2 568,375 - +1.5 568,375 - +0.4 568,375 - +0.7 568,375 - +0.2 568,375 - +0.8 568,375 - +1.4 568,375 - +0.3 568,395 - +0.1 568,395 - -0.3 568,395 - +0.6 568,395 - +0.2 568,402 - -0.1 568,402 - +1.1 568,402 - -0.5 568,402 - -0.7 568,402 - -0.2 568,402 - +0.8 568,402 - +1.0 568,404 - -1.4 568,404 - +0.5 568,404 - -0.9 568,408 + +0.1 568,408 + +0.3 568,408 + +0.4 568,408 + -1.4 568,408 + -0.3 568,409 - +0.5 568,409 - +1.0 568,409 - +0.7 568,409 - +1.2 568,409 - +0.5 568,409 - -0.2 568,409 - -0.3 568,409 - +1.7 568,409 - +0.2 568,409 - -2.1 568,428 - -1.4 568,609 + +0.4 568,609 + -0.3 568,609 + +0.2 568,781 + EX31_RS24005 0.40 -0.5 568,782 - EX31_RS24005 0.40 +0.3 568,782 - EX31_RS24005 0.40 -0.6 568,925 + EX31_RS24005 0.65 +0.2 568,925 + EX31_RS24005 0.65 -0.2 568,926 - EX31_RS24005 0.65 +0.3 568,929 + EX31_RS24005 0.66 +0.9 568,929 + EX31_RS24005 0.66 +0.5 568,929 + EX31_RS24005 0.66 +0.7 568,964 + EX31_RS24005 0.72 +0.5 568,964 + EX31_RS24005 0.72 +0.1 568,964 + EX31_RS24005 0.72 +1.6 568,964 + EX31_RS24005 0.72 -0.1 568,964 + EX31_RS24005 0.72 -0.2 568,964 + EX31_RS24005 0.72 +0.1 568,964 + EX31_RS24005 0.72 +0.8 568,964 + EX31_RS24005 0.72 -0.1 569,070 + +0.8 569,070 + +0.7 569,070 + +0.7 569,071 - +0.4 569,121 + -0.5 569,121 + +1.5 569,121 + +0.4 569,121 + +2.6 569,122 - -1.2 569,122 - -0.9 569,122 - +1.5 569,137 + +0.2 569,144 + -0.0 569,145 - -0.1 569,145 - +0.2 569,320 + EX31_RS24010 0.31 +0.1 569,320 + EX31_RS24010 0.31 -0.1 569,320 + EX31_RS24010 0.31 +2.3 569,531 + EX31_RS24010 0.71 -1.4 569,531 + EX31_RS24010 0.71 -1.5 569,583 + EX31_RS24010 0.80 -1.7 569,626 - EX31_RS24010 0.88 -0.5 569,670 + -0.0 569,670 + -0.6 569,670 + -0.4 569,670 + +0.8 569,670 + -1.8 569,670 + +0.4 569,670 + -0.8 569,670 + +0.2 569,670 + +1.3 569,670 + -0.9 569,670 + +0.3 569,670 + -0.8 569,670 + +0.0 569,670 + -0.1 569,670 + +1.1 569,670 + -0.5 569,670 + -0.1 569,671 - -0.3 569,671 - -0.3 569,671 - +0.1 569,671 - -0.2 569,671 - -2.1 569,671 - +0.4 569,671 - +1.3 569,672 + +0.1 569,672 + -1.4 569,672 + -0.1 569,672 + +0.3 569,673 - +0.2 569,673 - -1.0 569,673 - -0.4 570,158 - -0.1 570,274 + +0.2 570,275 - -1.3 570,276 + -0.9 570,276 + -0.5 570,277 - -0.1 570,305 + +0.3 570,305 + -0.6 570,305 + -1.6 570,306 - +0.1 570,306 - -0.3 570,307 + -0.5 570,307 + +0.6 570,307 + +0.2 570,307 + -1.8 570,307 + +1.0 570,307 + -0.3 570,308 - +0.8 570,308 - -0.6 570,308 - +0.0 570,308 - +0.3 570,308 - -0.4 570,308 - -0.3 570,308 - -0.7 570,308 - -0.1 570,308 - -2.0 570,308 - -0.9 570,308 - +0.7 570,308 - -0.1 570,308 - +0.1 570,308 - -1.8 570,337 - -1.2 570,361 + +0.7 570,361 + +0.1 570,362 - +0.6 570,364 + -0.2 570,365 - -0.7 570,440 + EX31_RS24015 0.15 +0.4 570,441 - EX31_RS24015 0.15 -2.5 570,441 - EX31_RS24015 0.15 +1.4 570,474 - EX31_RS24015 0.18 -0.3 570,476 - EX31_RS24015 0.19 -0.7 570,589 + EX31_RS24015 0.30 -0.0 570,590 - EX31_RS24015 0.30 +0.1 570,590 - EX31_RS24015 0.30 -0.3 570,661 + EX31_RS24015 0.37 +0.5 570,662 - EX31_RS24015 0.37 -0.2 570,662 - EX31_RS24015 0.37 +0.4 570,662 - EX31_RS24015 0.37 +0.2 570,662 - EX31_RS24015 0.37 +0.0 570,662 - EX31_RS24015 0.37 +0.8 570,662 - EX31_RS24015 0.37 +0.9 570,662 - EX31_RS24015 0.37 -0.9 570,662 - EX31_RS24015 0.37 +1.0
Or see this region's nucleotide sequence