Strain Fitness in Rahnella sp. WP5 around EX31_RS24010

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS24000 and EX31_RS24005 are separated by 179 nucleotidesEX31_RS24005 and EX31_RS24010 are separated by 27 nucleotidesEX31_RS24010 and EX31_RS24015 are separated by 603 nucleotides EX31_RS24000: EX31_RS24000 - MerR family transcriptional regulator, at 567,514 to 568,374 _RS24000 EX31_RS24005: EX31_RS24005 - helix-turn-helix transcriptional regulator, at 568,554 to 569,123 _RS24005 EX31_RS24010: EX31_RS24010 - GNAT family N-acetyltransferase, at 569,151 to 569,687 _RS24010 EX31_RS24015: EX31_RS24015 - ABC transporter permease, at 570,291 to 571,286 _RS24015 Position (kb) 569 570Strain fitness (log2 ratio) -2 -1 0 1 2at 568.158 kb on + strand, within EX31_RS24000at 568.159 kb on - strand, within EX31_RS24000at 568.159 kb on - strand, within EX31_RS24000at 568.374 kb on + strandat 568.374 kb on + strandat 568.374 kb on + strandat 568.374 kb on + strandat 568.374 kb on + strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.375 kb on - strandat 568.395 kb on - strandat 568.395 kb on - strandat 568.395 kb on - strandat 568.395 kb on - strandat 568.402 kb on - strandat 568.402 kb on - strandat 568.402 kb on - strandat 568.402 kb on - strandat 568.402 kb on - strandat 568.402 kb on - strandat 568.402 kb on - strandat 568.404 kb on - strandat 568.404 kb on - strandat 568.404 kb on - strandat 568.408 kb on + strandat 568.408 kb on + strandat 568.408 kb on + strandat 568.408 kb on + strandat 568.408 kb on + strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.409 kb on - strandat 568.428 kb on - strandat 568.609 kb on + strandat 568.609 kb on + strandat 568.609 kb on + strandat 568.781 kb on + strand, within EX31_RS24005at 568.782 kb on - strand, within EX31_RS24005at 568.782 kb on - strand, within EX31_RS24005at 568.925 kb on + strand, within EX31_RS24005at 568.925 kb on + strand, within EX31_RS24005at 568.926 kb on - strand, within EX31_RS24005at 568.929 kb on + strand, within EX31_RS24005at 568.929 kb on + strand, within EX31_RS24005at 568.929 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 568.964 kb on + strand, within EX31_RS24005at 569.070 kb on + strandat 569.070 kb on + strandat 569.070 kb on + strandat 569.071 kb on - strandat 569.121 kb on + strandat 569.121 kb on + strandat 569.121 kb on + strandat 569.121 kb on + strandat 569.122 kb on - strandat 569.122 kb on - strandat 569.122 kb on - strandat 569.137 kb on + strandat 569.144 kb on + strandat 569.145 kb on - strandat 569.145 kb on - strandat 569.320 kb on + strand, within EX31_RS24010at 569.320 kb on + strand, within EX31_RS24010at 569.320 kb on + strand, within EX31_RS24010at 569.531 kb on + strand, within EX31_RS24010at 569.531 kb on + strand, within EX31_RS24010at 569.583 kb on + strand, within EX31_RS24010at 569.626 kb on - strand, within EX31_RS24010at 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.670 kb on + strandat 569.671 kb on - strandat 569.671 kb on - strandat 569.671 kb on - strandat 569.671 kb on - strandat 569.671 kb on - strandat 569.671 kb on - strandat 569.671 kb on - strandat 569.672 kb on + strandat 569.672 kb on + strandat 569.672 kb on + strandat 569.672 kb on + strandat 569.673 kb on - strandat 569.673 kb on - strandat 569.673 kb on - strandat 570.158 kb on - strandat 570.274 kb on + strandat 570.275 kb on - strandat 570.276 kb on + strandat 570.276 kb on + strandat 570.277 kb on - strandat 570.305 kb on + strandat 570.305 kb on + strandat 570.305 kb on + strandat 570.306 kb on - strandat 570.306 kb on - strandat 570.307 kb on + strandat 570.307 kb on + strandat 570.307 kb on + strandat 570.307 kb on + strandat 570.307 kb on + strandat 570.307 kb on + strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.308 kb on - strandat 570.337 kb on - strandat 570.361 kb on + strandat 570.361 kb on + strandat 570.362 kb on - strandat 570.364 kb on + strandat 570.365 kb on - strandat 570.440 kb on + strand, within EX31_RS24015at 570.441 kb on - strand, within EX31_RS24015at 570.441 kb on - strand, within EX31_RS24015at 570.474 kb on - strand, within EX31_RS24015at 570.476 kb on - strand, within EX31_RS24015at 570.589 kb on + strand, within EX31_RS24015at 570.590 kb on - strand, within EX31_RS24015at 570.590 kb on - strand, within EX31_RS24015at 570.661 kb on + strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015at 570.662 kb on - strand, within EX31_RS24015

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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568,158 + EX31_RS24000 0.75 -1.1
568,159 - EX31_RS24000 0.75 +0.9
568,159 - EX31_RS24000 0.75 +0.8
568,374 + -1.4
568,374 + -1.6
568,374 + -0.6
568,374 + -0.3
568,374 + +0.3
568,375 - -0.3
568,375 - -0.2
568,375 - +1.5
568,375 - +0.4
568,375 - +0.7
568,375 - +0.2
568,375 - +0.8
568,375 - +1.4
568,375 - +0.3
568,395 - +0.1
568,395 - -0.3
568,395 - +0.6
568,395 - +0.2
568,402 - -0.1
568,402 - +1.1
568,402 - -0.5
568,402 - -0.7
568,402 - -0.2
568,402 - +0.8
568,402 - +1.0
568,404 - -1.4
568,404 - +0.5
568,404 - -0.9
568,408 + +0.1
568,408 + +0.3
568,408 + +0.4
568,408 + -1.4
568,408 + -0.3
568,409 - +0.5
568,409 - +1.0
568,409 - +0.7
568,409 - +1.2
568,409 - +0.5
568,409 - -0.2
568,409 - -0.3
568,409 - +1.7
568,409 - +0.2
568,409 - -2.1
568,428 - -1.4
568,609 + +0.4
568,609 + -0.3
568,609 + +0.2
568,781 + EX31_RS24005 0.40 -0.5
568,782 - EX31_RS24005 0.40 +0.3
568,782 - EX31_RS24005 0.40 -0.6
568,925 + EX31_RS24005 0.65 +0.2
568,925 + EX31_RS24005 0.65 -0.2
568,926 - EX31_RS24005 0.65 +0.3
568,929 + EX31_RS24005 0.66 +0.9
568,929 + EX31_RS24005 0.66 +0.5
568,929 + EX31_RS24005 0.66 +0.7
568,964 + EX31_RS24005 0.72 +0.5
568,964 + EX31_RS24005 0.72 +0.1
568,964 + EX31_RS24005 0.72 +1.6
568,964 + EX31_RS24005 0.72 -0.1
568,964 + EX31_RS24005 0.72 -0.2
568,964 + EX31_RS24005 0.72 +0.1
568,964 + EX31_RS24005 0.72 +0.8
568,964 + EX31_RS24005 0.72 -0.1
569,070 + +0.8
569,070 + +0.7
569,070 + +0.7
569,071 - +0.4
569,121 + -0.5
569,121 + +1.5
569,121 + +0.4
569,121 + +2.6
569,122 - -1.2
569,122 - -0.9
569,122 - +1.5
569,137 + +0.2
569,144 + -0.0
569,145 - -0.1
569,145 - +0.2
569,320 + EX31_RS24010 0.31 +0.1
569,320 + EX31_RS24010 0.31 -0.1
569,320 + EX31_RS24010 0.31 +2.3
569,531 + EX31_RS24010 0.71 -1.4
569,531 + EX31_RS24010 0.71 -1.5
569,583 + EX31_RS24010 0.80 -1.7
569,626 - EX31_RS24010 0.88 -0.5
569,670 + -0.0
569,670 + -0.6
569,670 + -0.4
569,670 + +0.8
569,670 + -1.8
569,670 + +0.4
569,670 + -0.8
569,670 + +0.2
569,670 + +1.3
569,670 + -0.9
569,670 + +0.3
569,670 + -0.8
569,670 + +0.0
569,670 + -0.1
569,670 + +1.1
569,670 + -0.5
569,670 + -0.1
569,671 - -0.3
569,671 - -0.3
569,671 - +0.1
569,671 - -0.2
569,671 - -2.1
569,671 - +0.4
569,671 - +1.3
569,672 + +0.1
569,672 + -1.4
569,672 + -0.1
569,672 + +0.3
569,673 - +0.2
569,673 - -1.0
569,673 - -0.4
570,158 - -0.1
570,274 + +0.2
570,275 - -1.3
570,276 + -0.9
570,276 + -0.5
570,277 - -0.1
570,305 + +0.3
570,305 + -0.6
570,305 + -1.6
570,306 - +0.1
570,306 - -0.3
570,307 + -0.5
570,307 + +0.6
570,307 + +0.2
570,307 + -1.8
570,307 + +1.0
570,307 + -0.3
570,308 - +0.8
570,308 - -0.6
570,308 - +0.0
570,308 - +0.3
570,308 - -0.4
570,308 - -0.3
570,308 - -0.7
570,308 - -0.1
570,308 - -2.0
570,308 - -0.9
570,308 - +0.7
570,308 - -0.1
570,308 - +0.1
570,308 - -1.8
570,337 - -1.2
570,361 + +0.7
570,361 + +0.1
570,362 - +0.6
570,364 + -0.2
570,365 - -0.7
570,440 + EX31_RS24015 0.15 +0.4
570,441 - EX31_RS24015 0.15 -2.5
570,441 - EX31_RS24015 0.15 +1.4
570,474 - EX31_RS24015 0.18 -0.3
570,476 - EX31_RS24015 0.19 -0.7
570,589 + EX31_RS24015 0.30 -0.0
570,590 - EX31_RS24015 0.30 +0.1
570,590 - EX31_RS24015 0.30 -0.3
570,661 + EX31_RS24015 0.37 +0.5
570,662 - EX31_RS24015 0.37 -0.2
570,662 - EX31_RS24015 0.37 +0.4
570,662 - EX31_RS24015 0.37 +0.2
570,662 - EX31_RS24015 0.37 +0.0
570,662 - EX31_RS24015 0.37 +0.8
570,662 - EX31_RS24015 0.37 +0.9
570,662 - EX31_RS24015 0.37 -0.9
570,662 - EX31_RS24015 0.37 +1.0

Or see this region's nucleotide sequence