Strain Fitness in Rahnella sp. WP5 around EX31_RS23375

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS23370 and EX31_RS23375 are separated by 26 nucleotidesEX31_RS23375 and EX31_RS23380 overlap by 4 nucleotides EX31_RS23370: EX31_RS23370 - 3',5'-cyclic-nucleotide phosphodiesterase, at 438,189 to 439,172 _RS23370 EX31_RS23375: EX31_RS23375 - type 2 GTP cyclohydrolase I, at 439,199 to 439,942 _RS23375 EX31_RS23380: EX31_RS23380 - MFS transporter, at 439,939 to 441,375 _RS23380 Position (kb) 439 440Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 438.199 kb on - strandat 438.306 kb on + strand, within EX31_RS23370at 438.307 kb on - strand, within EX31_RS23370at 438.336 kb on + strand, within EX31_RS23370at 438.474 kb on + strand, within EX31_RS23370at 438.475 kb on - strand, within EX31_RS23370at 438.591 kb on + strand, within EX31_RS23370at 438.592 kb on - strand, within EX31_RS23370at 438.592 kb on - strand, within EX31_RS23370at 438.592 kb on - strand, within EX31_RS23370at 438.640 kb on + strand, within EX31_RS23370at 438.640 kb on + strand, within EX31_RS23370at 438.640 kb on + strand, within EX31_RS23370at 438.640 kb on + strand, within EX31_RS23370at 438.640 kb on + strand, within EX31_RS23370at 438.640 kb on + strand, within EX31_RS23370at 438.641 kb on - strand, within EX31_RS23370at 438.641 kb on - strand, within EX31_RS23370at 438.641 kb on - strand, within EX31_RS23370at 438.645 kb on - strand, within EX31_RS23370at 438.655 kb on - strand, within EX31_RS23370at 438.719 kb on + strand, within EX31_RS23370at 438.719 kb on + strand, within EX31_RS23370at 438.719 kb on + strand, within EX31_RS23370at 438.719 kb on + strand, within EX31_RS23370at 438.719 kb on + strand, within EX31_RS23370at 438.720 kb on - strand, within EX31_RS23370at 438.720 kb on - strand, within EX31_RS23370at 438.720 kb on - strand, within EX31_RS23370at 438.720 kb on - strand, within EX31_RS23370at 438.724 kb on - strand, within EX31_RS23370at 438.724 kb on - strand, within EX31_RS23370at 438.744 kb on - strand, within EX31_RS23370at 438.776 kb on + strand, within EX31_RS23370at 438.777 kb on - strand, within EX31_RS23370at 438.996 kb on + strand, within EX31_RS23370at 439.037 kb on + strand, within EX31_RS23370at 439.049 kb on + strand, within EX31_RS23370at 439.159 kb on + strandat 439.159 kb on + strandat 439.159 kb on + strandat 439.159 kb on + strandat 439.159 kb on + strandat 439.170 kb on + strandat 439.171 kb on - strandat 439.171 kb on - strandat 439.182 kb on + strandat 439.182 kb on + strandat 439.183 kb on - strandat 439.185 kb on + strandat 439.204 kb on + strandat 439.253 kb on + strandat 439.262 kb on + strandat 439.262 kb on + strandat 439.447 kb on + strand, within EX31_RS23375at 439.448 kb on - strand, within EX31_RS23375at 439.474 kb on + strand, within EX31_RS23375at 439.474 kb on + strand, within EX31_RS23375at 439.474 kb on + strand, within EX31_RS23375at 439.474 kb on + strand, within EX31_RS23375at 439.474 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.478 kb on + strand, within EX31_RS23375at 439.479 kb on - strand, within EX31_RS23375at 439.479 kb on - strand, within EX31_RS23375at 439.479 kb on - strand, within EX31_RS23375at 439.479 kb on - strand, within EX31_RS23375at 439.479 kb on - strand, within EX31_RS23375at 439.479 kb on - strand, within EX31_RS23375at 439.522 kb on + strand, within EX31_RS23375at 439.768 kb on + strand, within EX31_RS23375at 439.769 kb on - strand, within EX31_RS23375at 439.801 kb on + strand, within EX31_RS23375at 439.802 kb on - strand, within EX31_RS23375at 440.003 kb on - strandat 440.043 kb on - strandat 440.043 kb on - strandat 440.043 kb on - strandat 440.307 kb on - strand, within EX31_RS23380at 440.307 kb on - strand, within EX31_RS23380at 440.662 kb on - strand, within EX31_RS23380at 440.706 kb on - strand, within EX31_RS23380at 440.749 kb on + strand, within EX31_RS23380at 440.767 kb on + strand, within EX31_RS23380at 440.772 kb on + strand, within EX31_RS23380at 440.820 kb on + strand, within EX31_RS23380at 440.820 kb on + strand, within EX31_RS23380at 440.820 kb on + strand, within EX31_RS23380at 440.820 kb on + strand, within EX31_RS23380at 440.820 kb on + strand, within EX31_RS23380at 440.820 kb on + strand, within EX31_RS23380at 440.821 kb on - strand, within EX31_RS23380at 440.821 kb on - strand, within EX31_RS23380

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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438,199 - -1.4
438,306 + EX31_RS23370 0.12 -0.4
438,307 - EX31_RS23370 0.12 +0.1
438,336 + EX31_RS23370 0.15 +0.1
438,474 + EX31_RS23370 0.29 -0.3
438,475 - EX31_RS23370 0.29 -0.3
438,591 + EX31_RS23370 0.41 -1.8
438,592 - EX31_RS23370 0.41 -0.4
438,592 - EX31_RS23370 0.41 -0.3
438,592 - EX31_RS23370 0.41 +0.7
438,640 + EX31_RS23370 0.46 -0.1
438,640 + EX31_RS23370 0.46 -0.6
438,640 + EX31_RS23370 0.46 -0.3
438,640 + EX31_RS23370 0.46 +0.5
438,640 + EX31_RS23370 0.46 +0.8
438,640 + EX31_RS23370 0.46 +0.0
438,641 - EX31_RS23370 0.46 -0.2
438,641 - EX31_RS23370 0.46 -0.3
438,641 - EX31_RS23370 0.46 +0.1
438,645 - EX31_RS23370 0.46 +0.1
438,655 - EX31_RS23370 0.47 -1.7
438,719 + EX31_RS23370 0.54 -0.3
438,719 + EX31_RS23370 0.54 -0.5
438,719 + EX31_RS23370 0.54 +0.5
438,719 + EX31_RS23370 0.54 -0.8
438,719 + EX31_RS23370 0.54 -0.0
438,720 - EX31_RS23370 0.54 -0.4
438,720 - EX31_RS23370 0.54 -0.9
438,720 - EX31_RS23370 0.54 -0.6
438,720 - EX31_RS23370 0.54 -2.8
438,724 - EX31_RS23370 0.54 +0.5
438,724 - EX31_RS23370 0.54 +0.6
438,744 - EX31_RS23370 0.56 -1.5
438,776 + EX31_RS23370 0.60 -0.1
438,777 - EX31_RS23370 0.60 +1.0
438,996 + EX31_RS23370 0.82 +0.5
439,037 + EX31_RS23370 0.86 -0.1
439,049 + EX31_RS23370 0.87 -0.1
439,159 + +2.2
439,159 + +1.0
439,159 + +0.5
439,159 + -0.4
439,159 + +0.2
439,170 + -0.4
439,171 - +0.2
439,171 - -1.0
439,182 + -0.1
439,182 + +0.5
439,183 - -0.2
439,185 + +0.0
439,204 + +0.2
439,253 + -0.7
439,262 + -0.3
439,262 + +0.0
439,447 + EX31_RS23375 0.33 -0.8
439,448 - EX31_RS23375 0.33 -1.4
439,474 + EX31_RS23375 0.37 +0.4
439,474 + EX31_RS23375 0.37 -0.3
439,474 + EX31_RS23375 0.37 -0.5
439,474 + EX31_RS23375 0.37 -0.6
439,474 + EX31_RS23375 0.37 +0.2
439,478 + EX31_RS23375 0.38 -0.8
439,478 + EX31_RS23375 0.38 +0.1
439,478 + EX31_RS23375 0.38 -1.7
439,478 + EX31_RS23375 0.38 -0.4
439,478 + EX31_RS23375 0.38 -0.2
439,478 + EX31_RS23375 0.38 -1.4
439,478 + EX31_RS23375 0.38 +1.6
439,478 + EX31_RS23375 0.38 -0.4
439,478 + EX31_RS23375 0.38 -0.7
439,478 + EX31_RS23375 0.38 +0.6
439,478 + EX31_RS23375 0.38 -1.2
439,478 + EX31_RS23375 0.38 +0.3
439,479 - EX31_RS23375 0.38 -2.7
439,479 - EX31_RS23375 0.38 -0.4
439,479 - EX31_RS23375 0.38 +0.1
439,479 - EX31_RS23375 0.38 -1.0
439,479 - EX31_RS23375 0.38 -0.8
439,479 - EX31_RS23375 0.38 -0.4
439,522 + EX31_RS23375 0.43 -0.8
439,768 + EX31_RS23375 0.76 -1.3
439,769 - EX31_RS23375 0.77 +0.5
439,801 + EX31_RS23375 0.81 -0.2
439,802 - EX31_RS23375 0.81 -1.1
440,003 - +0.2
440,043 - +0.5
440,043 - -0.5
440,043 - +0.1
440,307 - EX31_RS23380 0.26 -0.1
440,307 - EX31_RS23380 0.26 -1.0
440,662 - EX31_RS23380 0.50 +0.3
440,706 - EX31_RS23380 0.53 -0.5
440,749 + EX31_RS23380 0.56 +0.5
440,767 + EX31_RS23380 0.58 -0.5
440,772 + EX31_RS23380 0.58 -1.9
440,820 + EX31_RS23380 0.61 -0.6
440,820 + EX31_RS23380 0.61 -0.7
440,820 + EX31_RS23380 0.61 -2.0
440,820 + EX31_RS23380 0.61 -2.6
440,820 + EX31_RS23380 0.61 -0.1
440,820 + EX31_RS23380 0.61 +0.3
440,821 - EX31_RS23380 0.61 +0.9
440,821 - EX31_RS23380 0.61 +0.4

Or see this region's nucleotide sequence