Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS23370 and EX31_RS23375 are separated by 26 nucleotides EX31_RS23375 and EX31_RS23380 overlap by 4 nucleotides
EX31_RS23370: EX31_RS23370 - 3',5'-cyclic-nucleotide phosphodiesterase, at 438,189 to 439,172
_RS23370
EX31_RS23375: EX31_RS23375 - type 2 GTP cyclohydrolase I, at 439,199 to 439,942
_RS23375
EX31_RS23380: EX31_RS23380 - MFS transporter, at 439,939 to 441,375
_RS23380
Position (kb)
439
440 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 438.199 kb on - strand at 438.306 kb on + strand, within EX31_RS23370 at 438.307 kb on - strand, within EX31_RS23370 at 438.336 kb on + strand, within EX31_RS23370 at 438.474 kb on + strand, within EX31_RS23370 at 438.475 kb on - strand, within EX31_RS23370 at 438.591 kb on + strand, within EX31_RS23370 at 438.592 kb on - strand, within EX31_RS23370 at 438.592 kb on - strand, within EX31_RS23370 at 438.592 kb on - strand, within EX31_RS23370 at 438.640 kb on + strand, within EX31_RS23370 at 438.640 kb on + strand, within EX31_RS23370 at 438.640 kb on + strand, within EX31_RS23370 at 438.640 kb on + strand, within EX31_RS23370 at 438.640 kb on + strand, within EX31_RS23370 at 438.640 kb on + strand, within EX31_RS23370 at 438.641 kb on - strand, within EX31_RS23370 at 438.641 kb on - strand, within EX31_RS23370 at 438.641 kb on - strand, within EX31_RS23370 at 438.645 kb on - strand, within EX31_RS23370 at 438.655 kb on - strand, within EX31_RS23370 at 438.719 kb on + strand, within EX31_RS23370 at 438.719 kb on + strand, within EX31_RS23370 at 438.719 kb on + strand, within EX31_RS23370 at 438.719 kb on + strand, within EX31_RS23370 at 438.719 kb on + strand, within EX31_RS23370 at 438.720 kb on - strand, within EX31_RS23370 at 438.720 kb on - strand, within EX31_RS23370 at 438.720 kb on - strand, within EX31_RS23370 at 438.720 kb on - strand, within EX31_RS23370 at 438.724 kb on - strand, within EX31_RS23370 at 438.724 kb on - strand, within EX31_RS23370 at 438.744 kb on - strand, within EX31_RS23370 at 438.776 kb on + strand, within EX31_RS23370 at 438.777 kb on - strand, within EX31_RS23370 at 438.996 kb on + strand, within EX31_RS23370 at 439.037 kb on + strand, within EX31_RS23370 at 439.049 kb on + strand, within EX31_RS23370 at 439.159 kb on + strand at 439.159 kb on + strand at 439.159 kb on + strand at 439.159 kb on + strand at 439.159 kb on + strand at 439.170 kb on + strand at 439.171 kb on - strand at 439.171 kb on - strand at 439.182 kb on + strand at 439.182 kb on + strand at 439.183 kb on - strand at 439.185 kb on + strand at 439.204 kb on + strand at 439.253 kb on + strand at 439.262 kb on + strand at 439.262 kb on + strand at 439.447 kb on + strand, within EX31_RS23375 at 439.448 kb on - strand, within EX31_RS23375 at 439.474 kb on + strand, within EX31_RS23375 at 439.474 kb on + strand, within EX31_RS23375 at 439.474 kb on + strand, within EX31_RS23375 at 439.474 kb on + strand, within EX31_RS23375 at 439.474 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.478 kb on + strand, within EX31_RS23375 at 439.479 kb on - strand, within EX31_RS23375 at 439.479 kb on - strand, within EX31_RS23375 at 439.479 kb on - strand, within EX31_RS23375 at 439.479 kb on - strand, within EX31_RS23375 at 439.479 kb on - strand, within EX31_RS23375 at 439.479 kb on - strand, within EX31_RS23375 at 439.522 kb on + strand, within EX31_RS23375 at 439.768 kb on + strand, within EX31_RS23375 at 439.769 kb on - strand, within EX31_RS23375 at 439.801 kb on + strand, within EX31_RS23375 at 439.802 kb on - strand, within EX31_RS23375 at 440.003 kb on - strand at 440.043 kb on - strand at 440.043 kb on - strand at 440.043 kb on - strand at 440.307 kb on - strand, within EX31_RS23380 at 440.307 kb on - strand, within EX31_RS23380 at 440.662 kb on - strand, within EX31_RS23380 at 440.706 kb on - strand, within EX31_RS23380 at 440.749 kb on + strand, within EX31_RS23380 at 440.767 kb on + strand, within EX31_RS23380 at 440.772 kb on + strand, within EX31_RS23380 at 440.820 kb on + strand, within EX31_RS23380 at 440.820 kb on + strand, within EX31_RS23380 at 440.820 kb on + strand, within EX31_RS23380 at 440.820 kb on + strand, within EX31_RS23380 at 440.820 kb on + strand, within EX31_RS23380 at 440.820 kb on + strand, within EX31_RS23380 at 440.821 kb on - strand, within EX31_RS23380 at 440.821 kb on - strand, within EX31_RS23380
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 438,199 - -1.4 438,306 + EX31_RS23370 0.12 -0.4 438,307 - EX31_RS23370 0.12 +0.1 438,336 + EX31_RS23370 0.15 +0.1 438,474 + EX31_RS23370 0.29 -0.3 438,475 - EX31_RS23370 0.29 -0.3 438,591 + EX31_RS23370 0.41 -1.8 438,592 - EX31_RS23370 0.41 -0.4 438,592 - EX31_RS23370 0.41 -0.3 438,592 - EX31_RS23370 0.41 +0.7 438,640 + EX31_RS23370 0.46 -0.1 438,640 + EX31_RS23370 0.46 -0.6 438,640 + EX31_RS23370 0.46 -0.3 438,640 + EX31_RS23370 0.46 +0.5 438,640 + EX31_RS23370 0.46 +0.8 438,640 + EX31_RS23370 0.46 +0.0 438,641 - EX31_RS23370 0.46 -0.2 438,641 - EX31_RS23370 0.46 -0.3 438,641 - EX31_RS23370 0.46 +0.1 438,645 - EX31_RS23370 0.46 +0.1 438,655 - EX31_RS23370 0.47 -1.7 438,719 + EX31_RS23370 0.54 -0.3 438,719 + EX31_RS23370 0.54 -0.5 438,719 + EX31_RS23370 0.54 +0.5 438,719 + EX31_RS23370 0.54 -0.8 438,719 + EX31_RS23370 0.54 -0.0 438,720 - EX31_RS23370 0.54 -0.4 438,720 - EX31_RS23370 0.54 -0.9 438,720 - EX31_RS23370 0.54 -0.6 438,720 - EX31_RS23370 0.54 -2.8 438,724 - EX31_RS23370 0.54 +0.5 438,724 - EX31_RS23370 0.54 +0.6 438,744 - EX31_RS23370 0.56 -1.5 438,776 + EX31_RS23370 0.60 -0.1 438,777 - EX31_RS23370 0.60 +1.0 438,996 + EX31_RS23370 0.82 +0.5 439,037 + EX31_RS23370 0.86 -0.1 439,049 + EX31_RS23370 0.87 -0.1 439,159 + +2.2 439,159 + +1.0 439,159 + +0.5 439,159 + -0.4 439,159 + +0.2 439,170 + -0.4 439,171 - +0.2 439,171 - -1.0 439,182 + -0.1 439,182 + +0.5 439,183 - -0.2 439,185 + +0.0 439,204 + +0.2 439,253 + -0.7 439,262 + -0.3 439,262 + +0.0 439,447 + EX31_RS23375 0.33 -0.8 439,448 - EX31_RS23375 0.33 -1.4 439,474 + EX31_RS23375 0.37 +0.4 439,474 + EX31_RS23375 0.37 -0.3 439,474 + EX31_RS23375 0.37 -0.5 439,474 + EX31_RS23375 0.37 -0.6 439,474 + EX31_RS23375 0.37 +0.2 439,478 + EX31_RS23375 0.38 -0.8 439,478 + EX31_RS23375 0.38 +0.1 439,478 + EX31_RS23375 0.38 -1.7 439,478 + EX31_RS23375 0.38 -0.4 439,478 + EX31_RS23375 0.38 -0.2 439,478 + EX31_RS23375 0.38 -1.4 439,478 + EX31_RS23375 0.38 +1.6 439,478 + EX31_RS23375 0.38 -0.4 439,478 + EX31_RS23375 0.38 -0.7 439,478 + EX31_RS23375 0.38 +0.6 439,478 + EX31_RS23375 0.38 -1.2 439,478 + EX31_RS23375 0.38 +0.3 439,479 - EX31_RS23375 0.38 -2.7 439,479 - EX31_RS23375 0.38 -0.4 439,479 - EX31_RS23375 0.38 +0.1 439,479 - EX31_RS23375 0.38 -1.0 439,479 - EX31_RS23375 0.38 -0.8 439,479 - EX31_RS23375 0.38 -0.4 439,522 + EX31_RS23375 0.43 -0.8 439,768 + EX31_RS23375 0.76 -1.3 439,769 - EX31_RS23375 0.77 +0.5 439,801 + EX31_RS23375 0.81 -0.2 439,802 - EX31_RS23375 0.81 -1.1 440,003 - +0.2 440,043 - +0.5 440,043 - -0.5 440,043 - +0.1 440,307 - EX31_RS23380 0.26 -0.1 440,307 - EX31_RS23380 0.26 -1.0 440,662 - EX31_RS23380 0.50 +0.3 440,706 - EX31_RS23380 0.53 -0.5 440,749 + EX31_RS23380 0.56 +0.5 440,767 + EX31_RS23380 0.58 -0.5 440,772 + EX31_RS23380 0.58 -1.9 440,820 + EX31_RS23380 0.61 -0.6 440,820 + EX31_RS23380 0.61 -0.7 440,820 + EX31_RS23380 0.61 -2.0 440,820 + EX31_RS23380 0.61 -2.6 440,820 + EX31_RS23380 0.61 -0.1 440,820 + EX31_RS23380 0.61 +0.3 440,821 - EX31_RS23380 0.61 +0.9 440,821 - EX31_RS23380 0.61 +0.4
Or see this region's nucleotide sequence