Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS21565 and EX31_RS21570 are separated by 379 nucleotides EX31_RS21570 and EX31_RS21575 are separated by 265 nucleotides EX31_RS21575 and EX31_RS21580 are separated by 162 nucleotides
EX31_RS21565: EX31_RS21565 - ribokinase, at 58,401 to 59,333
_RS21565
EX31_RS21570: EX31_RS21570 - hypothetical protein, at 59,713 to 60,033
_RS21570
EX31_RS21575: EX31_RS21575 - hypothetical protein, at 60,299 to 60,700
_RS21575
EX31_RS21580: EX31_RS21580 - sugar ABC transporter permease, at 60,863 to 61,735
_RS21580
Position (kb)
60
61 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 59.350 kb on + strand at 59.350 kb on + strand at 59.350 kb on + strand at 59.351 kb on - strand at 59.427 kb on + strand at 59.428 kb on - strand at 59.477 kb on + strand at 59.477 kb on + strand at 59.478 kb on - strand at 59.478 kb on - strand at 59.478 kb on - strand at 59.479 kb on + strand at 59.504 kb on + strand at 59.553 kb on + strand at 59.553 kb on + strand at 59.553 kb on + strand at 59.554 kb on - strand at 59.554 kb on - strand at 59.554 kb on - strand at 59.554 kb on - strand at 59.579 kb on + strand at 59.580 kb on - strand at 59.585 kb on - strand at 59.641 kb on - strand at 59.641 kb on - strand at 59.692 kb on + strand at 59.693 kb on - strand at 59.709 kb on + strand at 59.709 kb on + strand at 59.710 kb on - strand at 59.710 kb on - strand at 59.818 kb on + strand, within EX31_RS21570 at 59.818 kb on + strand, within EX31_RS21570 at 59.819 kb on - strand, within EX31_RS21570 at 59.819 kb on - strand, within EX31_RS21570 at 59.898 kb on + strand, within EX31_RS21570 at 59.942 kb on - strand, within EX31_RS21570 at 60.100 kb on + strand at 60.116 kb on + strand at 60.190 kb on + strand at 60.282 kb on - strand at 60.370 kb on - strand, within EX31_RS21575 at 60.427 kb on + strand, within EX31_RS21575 at 60.450 kb on - strand, within EX31_RS21575 at 60.497 kb on + strand, within EX31_RS21575 at 60.637 kb on + strand, within EX31_RS21575 at 60.641 kb on + strand, within EX31_RS21575 at 60.673 kb on + strand at 60.675 kb on + strand at 60.676 kb on - strand at 60.676 kb on - strand at 60.746 kb on + strand at 60.771 kb on - strand at 60.830 kb on + strand at 60.831 kb on - strand at 60.831 kb on - strand at 60.839 kb on + strand at 60.861 kb on + strand at 60.922 kb on - strand at 60.922 kb on - strand at 60.929 kb on + strand at 60.929 kb on + strand at 60.929 kb on + strand at 60.929 kb on + strand at 60.929 kb on + strand at 60.929 kb on + strand at 60.930 kb on - strand at 60.930 kb on - strand at 60.930 kb on - strand at 60.932 kb on + strand at 61.073 kb on + strand, within EX31_RS21580 at 61.073 kb on + strand, within EX31_RS21580 at 61.073 kb on + strand, within EX31_RS21580 at 61.073 kb on + strand, within EX31_RS21580 at 61.074 kb on - strand, within EX31_RS21580 at 61.074 kb on - strand, within EX31_RS21580 at 61.074 kb on - strand, within EX31_RS21580 at 61.103 kb on - strand, within EX31_RS21580 at 61.103 kb on - strand, within EX31_RS21580 at 61.259 kb on + strand, within EX31_RS21580 at 61.259 kb on + strand, within EX31_RS21580 at 61.260 kb on - strand, within EX31_RS21580 at 61.289 kb on - strand, within EX31_RS21580 at 61.295 kb on + strand, within EX31_RS21580 at 61.295 kb on + strand, within EX31_RS21580 at 61.295 kb on + strand, within EX31_RS21580 at 61.296 kb on - strand, within EX31_RS21580 at 61.296 kb on - strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.364 kb on + strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.365 kb on - strand, within EX31_RS21580 at 61.460 kb on + strand, within EX31_RS21580 at 61.460 kb on + strand, within EX31_RS21580 at 61.460 kb on + strand, within EX31_RS21580 at 61.460 kb on + strand, within EX31_RS21580 at 61.461 kb on - strand, within EX31_RS21580 at 61.461 kb on - strand, within EX31_RS21580 at 61.461 kb on - strand, within EX31_RS21580 at 61.463 kb on - strand, within EX31_RS21580 at 61.463 kb on - strand, within EX31_RS21580 at 61.463 kb on - strand, within EX31_RS21580 at 61.520 kb on + strand, within EX31_RS21580 at 61.520 kb on + strand, within EX31_RS21580 at 61.521 kb on - strand, within EX31_RS21580 at 61.536 kb on + strand, within EX31_RS21580 at 61.536 kb on + strand, within EX31_RS21580 at 61.537 kb on - strand, within EX31_RS21580 at 61.595 kb on + strand, within EX31_RS21580 at 61.595 kb on + strand, within EX31_RS21580 at 61.596 kb on - strand, within EX31_RS21580 at 61.596 kb on - strand, within EX31_RS21580 at 61.596 kb on - strand, within EX31_RS21580 at 61.596 kb on - strand, within EX31_RS21580 at 61.596 kb on - strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.598 kb on + strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.599 kb on - strand, within EX31_RS21580 at 61.632 kb on + strand, within EX31_RS21580
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 59,350 + +3.1 59,350 + -0.2 59,350 + +0.1 59,351 - -0.6 59,427 + +0.2 59,428 - -0.1 59,477 + -1.1 59,477 + +0.1 59,478 - -0.3 59,478 - -0.8 59,478 - -1.5 59,479 + +0.5 59,504 + -0.2 59,553 + -0.2 59,553 + +0.5 59,553 + +0.5 59,554 - +0.7 59,554 - +1.1 59,554 - -0.3 59,554 - +0.4 59,579 + -0.1 59,580 - -0.3 59,585 - -0.5 59,641 - -0.8 59,641 - +1.0 59,692 + -0.3 59,693 - -0.4 59,709 + +0.5 59,709 + -1.5 59,710 - -0.1 59,710 - +0.4 59,818 + EX31_RS21570 0.33 -0.2 59,818 + EX31_RS21570 0.33 -0.2 59,819 - EX31_RS21570 0.33 -0.1 59,819 - EX31_RS21570 0.33 -0.8 59,898 + EX31_RS21570 0.58 +0.6 59,942 - EX31_RS21570 0.71 -0.3 60,100 + -2.7 60,116 + -0.4 60,190 + +0.2 60,282 - -0.5 60,370 - EX31_RS21575 0.18 +0.5 60,427 + EX31_RS21575 0.32 -1.0 60,450 - EX31_RS21575 0.38 -0.9 60,497 + EX31_RS21575 0.49 -0.5 60,637 + EX31_RS21575 0.84 -0.8 60,641 + EX31_RS21575 0.85 -0.2 60,673 + -0.8 60,675 + -0.2 60,676 - -0.2 60,676 - -1.5 60,746 + -0.5 60,771 - -0.7 60,830 + -1.4 60,831 - -1.0 60,831 - -0.3 60,839 + +1.1 60,861 + +0.3 60,922 - -2.1 60,922 - +0.5 60,929 + -0.2 60,929 + -0.1 60,929 + -0.0 60,929 + -0.8 60,929 + -1.3 60,929 + -0.1 60,930 - -0.0 60,930 - +0.5 60,930 - +0.3 60,932 + +1.9 61,073 + EX31_RS21580 0.24 +0.0 61,073 + EX31_RS21580 0.24 -0.3 61,073 + EX31_RS21580 0.24 -1.5 61,073 + EX31_RS21580 0.24 -0.2 61,074 - EX31_RS21580 0.24 +0.6 61,074 - EX31_RS21580 0.24 +0.2 61,074 - EX31_RS21580 0.24 -1.1 61,103 - EX31_RS21580 0.27 +0.4 61,103 - EX31_RS21580 0.27 +0.4 61,259 + EX31_RS21580 0.45 +0.3 61,259 + EX31_RS21580 0.45 -1.3 61,260 - EX31_RS21580 0.45 -0.7 61,289 - EX31_RS21580 0.49 +0.6 61,295 + EX31_RS21580 0.49 +0.6 61,295 + EX31_RS21580 0.49 +0.1 61,295 + EX31_RS21580 0.49 -0.4 61,296 - EX31_RS21580 0.50 -0.4 61,296 - EX31_RS21580 0.50 -0.2 61,364 + EX31_RS21580 0.57 +0.0 61,364 + EX31_RS21580 0.57 -0.1 61,364 + EX31_RS21580 0.57 +0.5 61,364 + EX31_RS21580 0.57 -0.4 61,364 + EX31_RS21580 0.57 +0.5 61,364 + EX31_RS21580 0.57 +0.3 61,364 + EX31_RS21580 0.57 +0.6 61,364 + EX31_RS21580 0.57 -0.0 61,364 + EX31_RS21580 0.57 +0.0 61,365 - EX31_RS21580 0.58 -0.7 61,365 - EX31_RS21580 0.58 -0.4 61,365 - EX31_RS21580 0.58 -0.7 61,365 - EX31_RS21580 0.58 +0.5 61,365 - EX31_RS21580 0.58 -0.2 61,365 - EX31_RS21580 0.58 +0.5 61,365 - EX31_RS21580 0.58 -1.2 61,460 + EX31_RS21580 0.68 -1.7 61,460 + EX31_RS21580 0.68 -0.3 61,460 + EX31_RS21580 0.68 -0.5 61,460 + EX31_RS21580 0.68 -0.3 61,461 - EX31_RS21580 0.68 -0.4 61,461 - EX31_RS21580 0.68 -0.6 61,461 - EX31_RS21580 0.68 -0.2 61,463 - EX31_RS21580 0.69 +0.3 61,463 - EX31_RS21580 0.69 +1.0 61,463 - EX31_RS21580 0.69 -0.5 61,520 + EX31_RS21580 0.75 -0.5 61,520 + EX31_RS21580 0.75 +0.0 61,521 - EX31_RS21580 0.75 +0.7 61,536 + EX31_RS21580 0.77 -0.6 61,536 + EX31_RS21580 0.77 -0.2 61,537 - EX31_RS21580 0.77 -0.6 61,595 + EX31_RS21580 0.84 -0.5 61,595 + EX31_RS21580 0.84 +0.6 61,596 - EX31_RS21580 0.84 +0.2 61,596 - EX31_RS21580 0.84 -0.8 61,596 - EX31_RS21580 0.84 +1.2 61,596 - EX31_RS21580 0.84 +0.7 61,596 - EX31_RS21580 0.84 -0.8 61,598 + EX31_RS21580 0.84 -0.1 61,598 + EX31_RS21580 0.84 -1.5 61,598 + EX31_RS21580 0.84 +0.2 61,598 + EX31_RS21580 0.84 +0.0 61,598 + EX31_RS21580 0.84 -1.1 61,598 + EX31_RS21580 0.84 +1.6 61,598 + EX31_RS21580 0.84 +0.5 61,599 - EX31_RS21580 0.84 +0.6 61,599 - EX31_RS21580 0.84 +0.2 61,599 - EX31_RS21580 0.84 +0.4 61,599 - EX31_RS21580 0.84 -1.2 61,599 - EX31_RS21580 0.84 -1.4 61,599 - EX31_RS21580 0.84 -1.7 61,599 - EX31_RS21580 0.84 -0.5 61,599 - EX31_RS21580 0.84 -1.1 61,599 - EX31_RS21580 0.84 -1.0 61,599 - EX31_RS21580 0.84 -1.5 61,599 - EX31_RS21580 0.84 -0.9 61,599 - EX31_RS21580 0.84 +0.6 61,599 - EX31_RS21580 0.84 -0.5 61,632 + EX31_RS21580 0.88 -0.9
Or see this region's nucleotide sequence