Strain Fitness in Rahnella sp. WP5 around EX31_RS21575

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS21565 and EX31_RS21570 are separated by 379 nucleotidesEX31_RS21570 and EX31_RS21575 are separated by 265 nucleotidesEX31_RS21575 and EX31_RS21580 are separated by 162 nucleotides EX31_RS21565: EX31_RS21565 - ribokinase, at 58,401 to 59,333 _RS21565 EX31_RS21570: EX31_RS21570 - hypothetical protein, at 59,713 to 60,033 _RS21570 EX31_RS21575: EX31_RS21575 - hypothetical protein, at 60,299 to 60,700 _RS21575 EX31_RS21580: EX31_RS21580 - sugar ABC transporter permease, at 60,863 to 61,735 _RS21580 Position (kb) 60 61Strain fitness (log2 ratio) -2 -1 0 1 2 3at 59.350 kb on + strandat 59.350 kb on + strandat 59.350 kb on + strandat 59.351 kb on - strandat 59.427 kb on + strandat 59.428 kb on - strandat 59.477 kb on + strandat 59.477 kb on + strandat 59.478 kb on - strandat 59.478 kb on - strandat 59.478 kb on - strandat 59.479 kb on + strandat 59.504 kb on + strandat 59.553 kb on + strandat 59.553 kb on + strandat 59.553 kb on + strandat 59.554 kb on - strandat 59.554 kb on - strandat 59.554 kb on - strandat 59.554 kb on - strandat 59.579 kb on + strandat 59.580 kb on - strandat 59.585 kb on - strandat 59.641 kb on - strandat 59.641 kb on - strandat 59.692 kb on + strandat 59.693 kb on - strandat 59.709 kb on + strandat 59.709 kb on + strandat 59.710 kb on - strandat 59.710 kb on - strandat 59.818 kb on + strand, within EX31_RS21570at 59.818 kb on + strand, within EX31_RS21570at 59.819 kb on - strand, within EX31_RS21570at 59.819 kb on - strand, within EX31_RS21570at 59.898 kb on + strand, within EX31_RS21570at 59.942 kb on - strand, within EX31_RS21570at 60.100 kb on + strandat 60.116 kb on + strandat 60.190 kb on + strandat 60.282 kb on - strandat 60.370 kb on - strand, within EX31_RS21575at 60.427 kb on + strand, within EX31_RS21575at 60.450 kb on - strand, within EX31_RS21575at 60.497 kb on + strand, within EX31_RS21575at 60.637 kb on + strand, within EX31_RS21575at 60.641 kb on + strand, within EX31_RS21575at 60.673 kb on + strandat 60.675 kb on + strandat 60.676 kb on - strandat 60.676 kb on - strandat 60.746 kb on + strandat 60.771 kb on - strandat 60.830 kb on + strandat 60.831 kb on - strandat 60.831 kb on - strandat 60.839 kb on + strandat 60.861 kb on + strandat 60.922 kb on - strandat 60.922 kb on - strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.929 kb on + strandat 60.930 kb on - strandat 60.930 kb on - strandat 60.930 kb on - strandat 60.932 kb on + strandat 61.073 kb on + strand, within EX31_RS21580at 61.073 kb on + strand, within EX31_RS21580at 61.073 kb on + strand, within EX31_RS21580at 61.073 kb on + strand, within EX31_RS21580at 61.074 kb on - strand, within EX31_RS21580at 61.074 kb on - strand, within EX31_RS21580at 61.074 kb on - strand, within EX31_RS21580at 61.103 kb on - strand, within EX31_RS21580at 61.103 kb on - strand, within EX31_RS21580at 61.259 kb on + strand, within EX31_RS21580at 61.259 kb on + strand, within EX31_RS21580at 61.260 kb on - strand, within EX31_RS21580at 61.289 kb on - strand, within EX31_RS21580at 61.295 kb on + strand, within EX31_RS21580at 61.295 kb on + strand, within EX31_RS21580at 61.295 kb on + strand, within EX31_RS21580at 61.296 kb on - strand, within EX31_RS21580at 61.296 kb on - strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.364 kb on + strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.365 kb on - strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.460 kb on + strand, within EX31_RS21580at 61.461 kb on - strand, within EX31_RS21580at 61.461 kb on - strand, within EX31_RS21580at 61.461 kb on - strand, within EX31_RS21580at 61.463 kb on - strand, within EX31_RS21580at 61.463 kb on - strand, within EX31_RS21580at 61.463 kb on - strand, within EX31_RS21580at 61.520 kb on + strand, within EX31_RS21580at 61.520 kb on + strand, within EX31_RS21580at 61.521 kb on - strand, within EX31_RS21580at 61.536 kb on + strand, within EX31_RS21580at 61.536 kb on + strand, within EX31_RS21580at 61.537 kb on - strand, within EX31_RS21580at 61.595 kb on + strand, within EX31_RS21580at 61.595 kb on + strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.596 kb on - strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.598 kb on + strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.599 kb on - strand, within EX31_RS21580at 61.632 kb on + strand, within EX31_RS21580

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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59,350 + +3.1
59,350 + -0.2
59,350 + +0.1
59,351 - -0.6
59,427 + +0.2
59,428 - -0.1
59,477 + -1.1
59,477 + +0.1
59,478 - -0.3
59,478 - -0.8
59,478 - -1.5
59,479 + +0.5
59,504 + -0.2
59,553 + -0.2
59,553 + +0.5
59,553 + +0.5
59,554 - +0.7
59,554 - +1.1
59,554 - -0.3
59,554 - +0.4
59,579 + -0.1
59,580 - -0.3
59,585 - -0.5
59,641 - -0.8
59,641 - +1.0
59,692 + -0.3
59,693 - -0.4
59,709 + +0.5
59,709 + -1.5
59,710 - -0.1
59,710 - +0.4
59,818 + EX31_RS21570 0.33 -0.2
59,818 + EX31_RS21570 0.33 -0.2
59,819 - EX31_RS21570 0.33 -0.1
59,819 - EX31_RS21570 0.33 -0.8
59,898 + EX31_RS21570 0.58 +0.6
59,942 - EX31_RS21570 0.71 -0.3
60,100 + -2.7
60,116 + -0.4
60,190 + +0.2
60,282 - -0.5
60,370 - EX31_RS21575 0.18 +0.5
60,427 + EX31_RS21575 0.32 -1.0
60,450 - EX31_RS21575 0.38 -0.9
60,497 + EX31_RS21575 0.49 -0.5
60,637 + EX31_RS21575 0.84 -0.8
60,641 + EX31_RS21575 0.85 -0.2
60,673 + -0.8
60,675 + -0.2
60,676 - -0.2
60,676 - -1.5
60,746 + -0.5
60,771 - -0.7
60,830 + -1.4
60,831 - -1.0
60,831 - -0.3
60,839 + +1.1
60,861 + +0.3
60,922 - -2.1
60,922 - +0.5
60,929 + -0.2
60,929 + -0.1
60,929 + -0.0
60,929 + -0.8
60,929 + -1.3
60,929 + -0.1
60,930 - -0.0
60,930 - +0.5
60,930 - +0.3
60,932 + +1.9
61,073 + EX31_RS21580 0.24 +0.0
61,073 + EX31_RS21580 0.24 -0.3
61,073 + EX31_RS21580 0.24 -1.5
61,073 + EX31_RS21580 0.24 -0.2
61,074 - EX31_RS21580 0.24 +0.6
61,074 - EX31_RS21580 0.24 +0.2
61,074 - EX31_RS21580 0.24 -1.1
61,103 - EX31_RS21580 0.27 +0.4
61,103 - EX31_RS21580 0.27 +0.4
61,259 + EX31_RS21580 0.45 +0.3
61,259 + EX31_RS21580 0.45 -1.3
61,260 - EX31_RS21580 0.45 -0.7
61,289 - EX31_RS21580 0.49 +0.6
61,295 + EX31_RS21580 0.49 +0.6
61,295 + EX31_RS21580 0.49 +0.1
61,295 + EX31_RS21580 0.49 -0.4
61,296 - EX31_RS21580 0.50 -0.4
61,296 - EX31_RS21580 0.50 -0.2
61,364 + EX31_RS21580 0.57 +0.0
61,364 + EX31_RS21580 0.57 -0.1
61,364 + EX31_RS21580 0.57 +0.5
61,364 + EX31_RS21580 0.57 -0.4
61,364 + EX31_RS21580 0.57 +0.5
61,364 + EX31_RS21580 0.57 +0.3
61,364 + EX31_RS21580 0.57 +0.6
61,364 + EX31_RS21580 0.57 -0.0
61,364 + EX31_RS21580 0.57 +0.0
61,365 - EX31_RS21580 0.58 -0.7
61,365 - EX31_RS21580 0.58 -0.4
61,365 - EX31_RS21580 0.58 -0.7
61,365 - EX31_RS21580 0.58 +0.5
61,365 - EX31_RS21580 0.58 -0.2
61,365 - EX31_RS21580 0.58 +0.5
61,365 - EX31_RS21580 0.58 -1.2
61,460 + EX31_RS21580 0.68 -1.7
61,460 + EX31_RS21580 0.68 -0.3
61,460 + EX31_RS21580 0.68 -0.5
61,460 + EX31_RS21580 0.68 -0.3
61,461 - EX31_RS21580 0.68 -0.4
61,461 - EX31_RS21580 0.68 -0.6
61,461 - EX31_RS21580 0.68 -0.2
61,463 - EX31_RS21580 0.69 +0.3
61,463 - EX31_RS21580 0.69 +1.0
61,463 - EX31_RS21580 0.69 -0.5
61,520 + EX31_RS21580 0.75 -0.5
61,520 + EX31_RS21580 0.75 +0.0
61,521 - EX31_RS21580 0.75 +0.7
61,536 + EX31_RS21580 0.77 -0.6
61,536 + EX31_RS21580 0.77 -0.2
61,537 - EX31_RS21580 0.77 -0.6
61,595 + EX31_RS21580 0.84 -0.5
61,595 + EX31_RS21580 0.84 +0.6
61,596 - EX31_RS21580 0.84 +0.2
61,596 - EX31_RS21580 0.84 -0.8
61,596 - EX31_RS21580 0.84 +1.2
61,596 - EX31_RS21580 0.84 +0.7
61,596 - EX31_RS21580 0.84 -0.8
61,598 + EX31_RS21580 0.84 -0.1
61,598 + EX31_RS21580 0.84 -1.5
61,598 + EX31_RS21580 0.84 +0.2
61,598 + EX31_RS21580 0.84 +0.0
61,598 + EX31_RS21580 0.84 -1.1
61,598 + EX31_RS21580 0.84 +1.6
61,598 + EX31_RS21580 0.84 +0.5
61,599 - EX31_RS21580 0.84 +0.6
61,599 - EX31_RS21580 0.84 +0.2
61,599 - EX31_RS21580 0.84 +0.4
61,599 - EX31_RS21580 0.84 -1.2
61,599 - EX31_RS21580 0.84 -1.4
61,599 - EX31_RS21580 0.84 -1.7
61,599 - EX31_RS21580 0.84 -0.5
61,599 - EX31_RS21580 0.84 -1.1
61,599 - EX31_RS21580 0.84 -1.0
61,599 - EX31_RS21580 0.84 -1.5
61,599 - EX31_RS21580 0.84 -0.9
61,599 - EX31_RS21580 0.84 +0.6
61,599 - EX31_RS21580 0.84 -0.5
61,632 + EX31_RS21580 0.88 -0.9

Or see this region's nucleotide sequence