Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS18965 and EX31_RS18970 are separated by 437 nucleotides EX31_RS18970 and EX31_RS18975 are separated by 401 nucleotides
EX31_RS18965: EX31_RS18965 - capsule biosynthesis protein, at 380,981 to 382,129
_RS18965
EX31_RS18970: EX31_RS18970 - DksA/TraR family C4-type zinc finger protein, at 382,567 to 382,833
_RS18970
EX31_RS18975: EX31_RS18975 - glutamine ABC transporter substrate-binding protein GlnH, at 383,235 to 383,978
_RS18975
Position (kb)
382
383 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 381.575 kb on - strand, within EX31_RS18965 at 381.593 kb on - strand, within EX31_RS18965 at 381.593 kb on - strand, within EX31_RS18965 at 381.626 kb on - strand, within EX31_RS18965 at 381.693 kb on + strand, within EX31_RS18965 at 381.693 kb on + strand, within EX31_RS18965 at 381.693 kb on + strand, within EX31_RS18965 at 381.694 kb on - strand, within EX31_RS18965 at 381.694 kb on - strand, within EX31_RS18965 at 381.694 kb on - strand, within EX31_RS18965 at 381.694 kb on - strand, within EX31_RS18965 at 381.706 kb on + strand, within EX31_RS18965 at 381.707 kb on - strand, within EX31_RS18965 at 381.726 kb on - strand, within EX31_RS18965 at 381.773 kb on + strand, within EX31_RS18965 at 381.774 kb on - strand, within EX31_RS18965 at 381.774 kb on - strand, within EX31_RS18965 at 381.849 kb on + strand, within EX31_RS18965 at 381.849 kb on + strand, within EX31_RS18965 at 381.849 kb on + strand, within EX31_RS18965 at 381.850 kb on - strand, within EX31_RS18965 at 381.850 kb on - strand, within EX31_RS18965 at 381.857 kb on + strand, within EX31_RS18965 at 381.858 kb on - strand, within EX31_RS18965 at 381.858 kb on - strand, within EX31_RS18965 at 381.861 kb on + strand, within EX31_RS18965 at 381.861 kb on + strand, within EX31_RS18965 at 381.862 kb on - strand, within EX31_RS18965 at 381.862 kb on - strand, within EX31_RS18965 at 381.906 kb on - strand, within EX31_RS18965 at 381.940 kb on + strand, within EX31_RS18965 at 381.975 kb on + strand, within EX31_RS18965 at 382.002 kb on + strand, within EX31_RS18965 at 382.002 kb on + strand, within EX31_RS18965 at 382.002 kb on + strand, within EX31_RS18965 at 382.002 kb on + strand, within EX31_RS18965 at 382.002 kb on + strand, within EX31_RS18965 at 382.002 kb on + strand, within EX31_RS18965 at 382.003 kb on - strand, within EX31_RS18965 at 382.003 kb on - strand, within EX31_RS18965 at 382.003 kb on - strand, within EX31_RS18965 at 382.003 kb on - strand, within EX31_RS18965 at 382.003 kb on - strand, within EX31_RS18965 at 382.003 kb on - strand, within EX31_RS18965 at 382.069 kb on + strand at 382.072 kb on + strand at 382.072 kb on + strand at 382.073 kb on - strand at 382.073 kb on - strand at 382.103 kb on - strand at 382.146 kb on + strand at 382.146 kb on + strand at 382.146 kb on + strand at 382.147 kb on - strand at 382.147 kb on - strand at 382.147 kb on - strand at 382.147 kb on - strand at 382.149 kb on + strand at 382.149 kb on + strand at 382.176 kb on - strand at 382.192 kb on - strand at 382.192 kb on - strand at 382.192 kb on - strand at 382.216 kb on + strand at 382.265 kb on + strand at 382.266 kb on - strand at 382.266 kb on - strand at 382.266 kb on - strand at 382.271 kb on + strand at 382.271 kb on + strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.272 kb on - strand at 382.285 kb on + strand at 382.285 kb on + strand at 382.285 kb on + strand at 382.285 kb on + strand at 382.285 kb on + strand at 382.285 kb on + strand at 382.285 kb on + strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.286 kb on - strand at 382.348 kb on + strand at 382.349 kb on - strand at 382.388 kb on - strand at 382.388 kb on - strand at 382.437 kb on - strand at 382.437 kb on - strand at 382.465 kb on + strand at 382.465 kb on + strand at 382.465 kb on + strand at 382.465 kb on + strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.466 kb on - strand at 382.469 kb on + strand at 382.469 kb on + strand at 382.469 kb on + strand at 382.470 kb on - strand at 382.470 kb on - strand at 382.470 kb on - strand at 382.470 kb on - strand at 382.470 kb on - strand at 382.470 kb on - strand at 382.470 kb on - strand at 382.481 kb on - strand at 382.481 kb on - strand at 382.481 kb on - strand at 382.481 kb on - strand at 382.507 kb on + strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.512 kb on + strand at 382.513 kb on - strand at 382.513 kb on - strand at 382.513 kb on - strand at 382.513 kb on - strand at 382.524 kb on + strand at 382.524 kb on + strand at 382.525 kb on - strand at 382.550 kb on + strand at 382.550 kb on + strand at 382.566 kb on + strand at 382.567 kb on - strand at 382.683 kb on + strand, within EX31_RS18970 at 382.684 kb on - strand, within EX31_RS18970 at 382.684 kb on - strand, within EX31_RS18970 at 382.737 kb on - strand, within EX31_RS18970 at 382.737 kb on - strand, within EX31_RS18970 at 382.741 kb on + strand, within EX31_RS18970 at 382.742 kb on - strand, within EX31_RS18970 at 382.795 kb on + strand, within EX31_RS18970 at 382.796 kb on - strand, within EX31_RS18970 at 382.796 kb on - strand, within EX31_RS18970 at 382.796 kb on - strand, within EX31_RS18970 at 382.796 kb on - strand, within EX31_RS18970 at 382.832 kb on - strand at 382.839 kb on + strand at 382.839 kb on + strand at 382.839 kb on + strand at 382.840 kb on - strand at 382.840 kb on - strand at 382.844 kb on + strand at 382.845 kb on - strand at 382.845 kb on - strand at 382.845 kb on - strand at 382.845 kb on - strand at 382.845 kb on - strand at 382.846 kb on + strand at 382.846 kb on + strand at 382.846 kb on + strand at 382.846 kb on + strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.847 kb on - strand at 382.862 kb on + strand at 382.862 kb on + strand at 382.894 kb on + strand at 382.895 kb on - strand at 382.895 kb on - strand at 382.950 kb on + strand at 382.951 kb on - strand at 382.951 kb on - strand at 382.951 kb on - strand at 382.956 kb on + strand at 382.956 kb on + strand at 382.957 kb on - strand at 382.957 kb on - strand at 382.995 kb on + strand at 382.995 kb on + strand at 382.999 kb on + strand at 382.999 kb on + strand at 383.000 kb on - strand at 383.010 kb on + strand at 383.011 kb on - strand at 383.015 kb on + strand at 383.015 kb on + strand at 383.016 kb on - strand at 383.016 kb on - strand at 383.016 kb on - strand at 383.022 kb on + strand at 383.022 kb on + strand at 383.022 kb on + strand at 383.023 kb on - strand at 383.023 kb on - strand at 383.023 kb on - strand at 383.023 kb on - strand at 383.023 kb on - strand at 383.023 kb on - strand at 383.023 kb on - strand at 383.102 kb on + strand at 383.154 kb on - strand at 383.191 kb on + strand at 383.195 kb on - strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.213 kb on + strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.214 kb on - strand at 383.217 kb on + strand at 383.217 kb on + strand at 383.218 kb on - strand at 383.248 kb on + strand at 383.270 kb on - strand at 383.306 kb on + strand at 383.321 kb on - strand, within EX31_RS18975 at 383.321 kb on - strand, within EX31_RS18975 at 383.324 kb on + strand, within EX31_RS18975 at 383.325 kb on - strand, within EX31_RS18975 at 383.341 kb on + strand, within EX31_RS18975 at 383.366 kb on + strand, within EX31_RS18975 at 383.366 kb on + strand, within EX31_RS18975 at 383.367 kb on - strand, within EX31_RS18975 at 383.370 kb on + strand, within EX31_RS18975 at 383.370 kb on + strand, within EX31_RS18975 at 383.370 kb on + strand, within EX31_RS18975 at 383.370 kb on + strand, within EX31_RS18975 at 383.370 kb on + strand, within EX31_RS18975 at 383.371 kb on - strand, within EX31_RS18975 at 383.371 kb on - strand, within EX31_RS18975 at 383.371 kb on - strand, within EX31_RS18975 at 383.371 kb on - strand, within EX31_RS18975 at 383.427 kb on + strand, within EX31_RS18975 at 383.427 kb on + strand, within EX31_RS18975 at 383.427 kb on + strand, within EX31_RS18975 at 383.428 kb on - strand, within EX31_RS18975 at 383.556 kb on + strand, within EX31_RS18975 at 383.556 kb on + strand, within EX31_RS18975 at 383.582 kb on + strand, within EX31_RS18975 at 383.582 kb on + strand, within EX31_RS18975 at 383.582 kb on + strand, within EX31_RS18975 at 383.628 kb on - strand, within EX31_RS18975 at 383.667 kb on + strand, within EX31_RS18975 at 383.668 kb on - strand, within EX31_RS18975 at 383.668 kb on - strand, within EX31_RS18975 at 383.668 kb on - strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.727 kb on + strand, within EX31_RS18975 at 383.728 kb on - strand, within EX31_RS18975 at 383.728 kb on - strand, within EX31_RS18975 at 383.728 kb on - strand, within EX31_RS18975 at 383.728 kb on - strand, within EX31_RS18975 at 383.787 kb on + strand, within EX31_RS18975 at 383.787 kb on + strand, within EX31_RS18975 at 383.787 kb on + strand, within EX31_RS18975 at 383.788 kb on - strand, within EX31_RS18975 at 383.788 kb on - strand, within EX31_RS18975 at 383.788 kb on - strand, within EX31_RS18975 at 383.788 kb on - strand, within EX31_RS18975
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 381,575 - EX31_RS18965 0.52 +1.0 381,593 - EX31_RS18965 0.53 +0.2 381,593 - EX31_RS18965 0.53 -0.0 381,626 - EX31_RS18965 0.56 -2.0 381,693 + EX31_RS18965 0.62 -1.0 381,693 + EX31_RS18965 0.62 +0.1 381,693 + EX31_RS18965 0.62 -0.3 381,694 - EX31_RS18965 0.62 -0.1 381,694 - EX31_RS18965 0.62 -0.2 381,694 - EX31_RS18965 0.62 -0.8 381,694 - EX31_RS18965 0.62 +0.1 381,706 + EX31_RS18965 0.63 -0.4 381,707 - EX31_RS18965 0.63 -0.1 381,726 - EX31_RS18965 0.65 +0.5 381,773 + EX31_RS18965 0.69 +0.2 381,774 - EX31_RS18965 0.69 -0.8 381,774 - EX31_RS18965 0.69 -0.3 381,849 + EX31_RS18965 0.76 +0.1 381,849 + EX31_RS18965 0.76 -1.5 381,849 + EX31_RS18965 0.76 +0.4 381,850 - EX31_RS18965 0.76 -1.0 381,850 - EX31_RS18965 0.76 -0.3 381,857 + EX31_RS18965 0.76 -0.4 381,858 - EX31_RS18965 0.76 +0.3 381,858 - EX31_RS18965 0.76 +0.9 381,861 + EX31_RS18965 0.77 -1.5 381,861 + EX31_RS18965 0.77 -0.1 381,862 - EX31_RS18965 0.77 +0.4 381,862 - EX31_RS18965 0.77 +0.7 381,906 - EX31_RS18965 0.81 +0.8 381,940 + EX31_RS18965 0.83 -0.6 381,975 + EX31_RS18965 0.87 -0.3 382,002 + EX31_RS18965 0.89 +0.6 382,002 + EX31_RS18965 0.89 -1.1 382,002 + EX31_RS18965 0.89 +0.2 382,002 + EX31_RS18965 0.89 +0.6 382,002 + EX31_RS18965 0.89 -1.1 382,002 + EX31_RS18965 0.89 +0.5 382,003 - EX31_RS18965 0.89 +0.2 382,003 - EX31_RS18965 0.89 +0.8 382,003 - EX31_RS18965 0.89 -0.5 382,003 - EX31_RS18965 0.89 +0.3 382,003 - EX31_RS18965 0.89 +0.3 382,003 - EX31_RS18965 0.89 -0.3 382,069 + -1.0 382,072 + -0.6 382,072 + -0.5 382,073 - +0.4 382,073 - -1.9 382,103 - -0.3 382,146 + +0.2 382,146 + +0.3 382,146 + -0.6 382,147 - -0.4 382,147 - +0.8 382,147 - +0.8 382,147 - +0.3 382,149 + -0.3 382,149 + -2.2 382,176 - +0.2 382,192 - +0.0 382,192 - -0.5 382,192 - -1.0 382,216 + +0.3 382,265 + +0.1 382,266 - +0.4 382,266 - +0.4 382,266 - +0.4 382,271 + -2.3 382,271 + +0.0 382,272 - +0.9 382,272 - -0.5 382,272 - -0.3 382,272 - +0.7 382,272 - -0.7 382,272 - +0.2 382,272 - +0.5 382,272 - +0.2 382,272 - +0.6 382,272 - -0.9 382,272 - +0.1 382,272 - +0.6 382,272 - +0.6 382,285 + +0.4 382,285 + -1.3 382,285 + +0.4 382,285 + +1.0 382,285 + +0.4 382,285 + +0.0 382,285 + -0.2 382,286 - -0.3 382,286 - -0.1 382,286 - -0.2 382,286 - -0.1 382,286 - -0.0 382,286 - +1.0 382,286 - +0.9 382,286 - +0.3 382,286 - +0.4 382,286 - -0.1 382,286 - -0.7 382,286 - +0.5 382,286 - -0.8 382,286 - -0.0 382,348 + -0.8 382,349 - +0.1 382,388 - -0.1 382,388 - +0.3 382,437 - +0.4 382,437 - +0.7 382,465 + -0.4 382,465 + +1.9 382,465 + +0.4 382,465 + -0.9 382,466 - -0.0 382,466 - +0.0 382,466 - +0.4 382,466 - +0.0 382,466 - -0.0 382,466 - +1.0 382,466 - +0.3 382,466 - +0.3 382,466 - +0.1 382,466 - +0.8 382,466 - +0.4 382,466 - +1.3 382,466 - -0.2 382,469 + +1.0 382,469 + -1.4 382,469 + -1.4 382,470 - +1.1 382,470 - +0.4 382,470 - +0.8 382,470 - +0.6 382,470 - +0.2 382,470 - +0.1 382,470 - +0.5 382,481 - +0.1 382,481 - +0.1 382,481 - +0.3 382,481 - +0.7 382,507 + +0.0 382,512 + +1.2 382,512 + +0.5 382,512 + -1.3 382,512 + -0.5 382,512 + +0.4 382,512 + -0.7 382,512 + +0.6 382,513 - -0.3 382,513 - -1.7 382,513 - -1.0 382,513 - -0.3 382,524 + -0.4 382,524 + +0.5 382,525 - +0.7 382,550 + +0.0 382,550 + +0.6 382,566 + -0.4 382,567 - +0.2 382,683 + EX31_RS18970 0.43 -0.2 382,684 - EX31_RS18970 0.44 -1.2 382,684 - EX31_RS18970 0.44 -0.2 382,737 - EX31_RS18970 0.64 -1.1 382,737 - EX31_RS18970 0.64 -1.1 382,741 + EX31_RS18970 0.65 -0.6 382,742 - EX31_RS18970 0.66 -1.5 382,795 + EX31_RS18970 0.85 -1.1 382,796 - EX31_RS18970 0.86 +0.4 382,796 - EX31_RS18970 0.86 -1.5 382,796 - EX31_RS18970 0.86 +0.7 382,796 - EX31_RS18970 0.86 -0.6 382,832 - +1.1 382,839 + -1.8 382,839 + -0.4 382,839 + -0.3 382,840 - -0.7 382,840 - +0.9 382,844 + -0.6 382,845 - +1.1 382,845 - +0.6 382,845 - -0.6 382,845 - -1.4 382,845 - -3.3 382,846 + +0.2 382,846 + -0.0 382,846 + -0.7 382,846 + +0.6 382,847 - -0.2 382,847 - -0.6 382,847 - +0.1 382,847 - +0.2 382,847 - +0.5 382,847 - +0.4 382,847 - +0.7 382,847 - -0.3 382,862 + +0.1 382,862 + +0.3 382,894 + +0.5 382,895 - +0.0 382,895 - +0.2 382,950 + -0.1 382,951 - +0.9 382,951 - -1.2 382,951 - +0.4 382,956 + -1.0 382,956 + -1.6 382,957 - +0.1 382,957 - -0.1 382,995 + +0.1 382,995 + -1.0 382,999 + -0.3 382,999 + -0.3 383,000 - +0.2 383,010 + -0.2 383,011 - -2.7 383,015 + -0.5 383,015 + +0.0 383,016 - -0.6 383,016 - +0.6 383,016 - -0.2 383,022 + +0.2 383,022 + -0.3 383,022 + -2.6 383,023 - +0.1 383,023 - +0.4 383,023 - +0.6 383,023 - -0.9 383,023 - +0.8 383,023 - +1.8 383,023 - -2.9 383,102 + -0.4 383,154 - -0.7 383,191 + -0.2 383,195 - +0.4 383,213 + +0.8 383,213 + +0.1 383,213 + +0.9 383,213 + +0.6 383,213 + +0.3 383,213 + -0.2 383,213 + +0.4 383,213 + -1.0 383,213 + -1.3 383,214 - -0.4 383,214 - +1.0 383,214 - -0.5 383,214 - +0.1 383,214 - +0.8 383,214 - +0.7 383,214 - +0.4 383,214 - -0.3 383,214 - -1.2 383,214 - +0.5 383,214 - +0.6 383,214 - -0.2 383,214 - +0.5 383,214 - +0.6 383,214 - +0.2 383,214 - +0.6 383,217 + -0.2 383,217 + -0.1 383,218 - -1.0 383,248 + +0.8 383,270 - +0.3 383,306 + +0.0 383,321 - EX31_RS18975 0.12 +0.2 383,321 - EX31_RS18975 0.12 -0.1 383,324 + EX31_RS18975 0.12 +0.5 383,325 - EX31_RS18975 0.12 -0.4 383,341 + EX31_RS18975 0.14 +0.3 383,366 + EX31_RS18975 0.18 -0.4 383,366 + EX31_RS18975 0.18 +0.3 383,367 - EX31_RS18975 0.18 -0.0 383,370 + EX31_RS18975 0.18 +0.6 383,370 + EX31_RS18975 0.18 +1.0 383,370 + EX31_RS18975 0.18 +0.6 383,370 + EX31_RS18975 0.18 +1.1 383,370 + EX31_RS18975 0.18 +0.6 383,371 - EX31_RS18975 0.18 +0.2 383,371 - EX31_RS18975 0.18 +0.2 383,371 - EX31_RS18975 0.18 +0.1 383,371 - EX31_RS18975 0.18 +0.2 383,427 + EX31_RS18975 0.26 -0.2 383,427 + EX31_RS18975 0.26 +1.0 383,427 + EX31_RS18975 0.26 +0.1 383,428 - EX31_RS18975 0.26 +1.0 383,556 + EX31_RS18975 0.43 -0.5 383,556 + EX31_RS18975 0.43 +0.3 383,582 + EX31_RS18975 0.47 +0.0 383,582 + EX31_RS18975 0.47 +1.0 383,582 + EX31_RS18975 0.47 +0.1 383,628 - EX31_RS18975 0.53 -0.5 383,667 + EX31_RS18975 0.58 +0.3 383,668 - EX31_RS18975 0.58 +1.0 383,668 - EX31_RS18975 0.58 -0.8 383,668 - EX31_RS18975 0.58 -2.7 383,727 + EX31_RS18975 0.66 +0.2 383,727 + EX31_RS18975 0.66 +0.6 383,727 + EX31_RS18975 0.66 +0.6 383,727 + EX31_RS18975 0.66 +0.1 383,727 + EX31_RS18975 0.66 +0.5 383,727 + EX31_RS18975 0.66 +0.1 383,727 + EX31_RS18975 0.66 +0.3 383,728 - EX31_RS18975 0.66 -0.4 383,728 - EX31_RS18975 0.66 +0.5 383,728 - EX31_RS18975 0.66 +1.0 383,728 - EX31_RS18975 0.66 +0.0 383,787 + EX31_RS18975 0.74 +0.9 383,787 + EX31_RS18975 0.74 +0.3 383,787 + EX31_RS18975 0.74 +0.3 383,788 - EX31_RS18975 0.74 +0.4 383,788 - EX31_RS18975 0.74 -0.2 383,788 - EX31_RS18975 0.74 -0.4 383,788 - EX31_RS18975 0.74 -0.8
Or see this region's nucleotide sequence