Strain Fitness in Rahnella sp. WP5 around EX31_RS18970

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS18965 and EX31_RS18970 are separated by 437 nucleotidesEX31_RS18970 and EX31_RS18975 are separated by 401 nucleotides EX31_RS18965: EX31_RS18965 - capsule biosynthesis protein, at 380,981 to 382,129 _RS18965 EX31_RS18970: EX31_RS18970 - DksA/TraR family C4-type zinc finger protein, at 382,567 to 382,833 _RS18970 EX31_RS18975: EX31_RS18975 - glutamine ABC transporter substrate-binding protein GlnH, at 383,235 to 383,978 _RS18975 Position (kb) 382 383Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 381.575 kb on - strand, within EX31_RS18965at 381.593 kb on - strand, within EX31_RS18965at 381.593 kb on - strand, within EX31_RS18965at 381.626 kb on - strand, within EX31_RS18965at 381.693 kb on + strand, within EX31_RS18965at 381.693 kb on + strand, within EX31_RS18965at 381.693 kb on + strand, within EX31_RS18965at 381.694 kb on - strand, within EX31_RS18965at 381.694 kb on - strand, within EX31_RS18965at 381.694 kb on - strand, within EX31_RS18965at 381.694 kb on - strand, within EX31_RS18965at 381.706 kb on + strand, within EX31_RS18965at 381.707 kb on - strand, within EX31_RS18965at 381.726 kb on - strand, within EX31_RS18965at 381.773 kb on + strand, within EX31_RS18965at 381.774 kb on - strand, within EX31_RS18965at 381.774 kb on - strand, within EX31_RS18965at 381.849 kb on + strand, within EX31_RS18965at 381.849 kb on + strand, within EX31_RS18965at 381.849 kb on + strand, within EX31_RS18965at 381.850 kb on - strand, within EX31_RS18965at 381.850 kb on - strand, within EX31_RS18965at 381.857 kb on + strand, within EX31_RS18965at 381.858 kb on - strand, within EX31_RS18965at 381.858 kb on - strand, within EX31_RS18965at 381.861 kb on + strand, within EX31_RS18965at 381.861 kb on + strand, within EX31_RS18965at 381.862 kb on - strand, within EX31_RS18965at 381.862 kb on - strand, within EX31_RS18965at 381.906 kb on - strand, within EX31_RS18965at 381.940 kb on + strand, within EX31_RS18965at 381.975 kb on + strand, within EX31_RS18965at 382.002 kb on + strand, within EX31_RS18965at 382.002 kb on + strand, within EX31_RS18965at 382.002 kb on + strand, within EX31_RS18965at 382.002 kb on + strand, within EX31_RS18965at 382.002 kb on + strand, within EX31_RS18965at 382.002 kb on + strand, within EX31_RS18965at 382.003 kb on - strand, within EX31_RS18965at 382.003 kb on - strand, within EX31_RS18965at 382.003 kb on - strand, within EX31_RS18965at 382.003 kb on - strand, within EX31_RS18965at 382.003 kb on - strand, within EX31_RS18965at 382.003 kb on - strand, within EX31_RS18965at 382.069 kb on + strandat 382.072 kb on + strandat 382.072 kb on + strandat 382.073 kb on - strandat 382.073 kb on - strandat 382.103 kb on - strandat 382.146 kb on + strandat 382.146 kb on + strandat 382.146 kb on + strandat 382.147 kb on - strandat 382.147 kb on - strandat 382.147 kb on - strandat 382.147 kb on - strandat 382.149 kb on + strandat 382.149 kb on + strandat 382.176 kb on - strandat 382.192 kb on - strandat 382.192 kb on - strandat 382.192 kb on - strandat 382.216 kb on + strandat 382.265 kb on + strandat 382.266 kb on - strandat 382.266 kb on - strandat 382.266 kb on - strandat 382.271 kb on + strandat 382.271 kb on + strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.272 kb on - strandat 382.285 kb on + strandat 382.285 kb on + strandat 382.285 kb on + strandat 382.285 kb on + strandat 382.285 kb on + strandat 382.285 kb on + strandat 382.285 kb on + strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.286 kb on - strandat 382.348 kb on + strandat 382.349 kb on - strandat 382.388 kb on - strandat 382.388 kb on - strandat 382.437 kb on - strandat 382.437 kb on - strandat 382.465 kb on + strandat 382.465 kb on + strandat 382.465 kb on + strandat 382.465 kb on + strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.466 kb on - strandat 382.469 kb on + strandat 382.469 kb on + strandat 382.469 kb on + strandat 382.470 kb on - strandat 382.470 kb on - strandat 382.470 kb on - strandat 382.470 kb on - strandat 382.470 kb on - strandat 382.470 kb on - strandat 382.470 kb on - strandat 382.481 kb on - strandat 382.481 kb on - strandat 382.481 kb on - strandat 382.481 kb on - strandat 382.507 kb on + strandat 382.512 kb on + strandat 382.512 kb on + strandat 382.512 kb on + strandat 382.512 kb on + strandat 382.512 kb on + strandat 382.512 kb on + strandat 382.512 kb on + strandat 382.513 kb on - strandat 382.513 kb on - strandat 382.513 kb on - strandat 382.513 kb on - strandat 382.524 kb on + strandat 382.524 kb on + strandat 382.525 kb on - strandat 382.550 kb on + strandat 382.550 kb on + strandat 382.566 kb on + strandat 382.567 kb on - strandat 382.683 kb on + strand, within EX31_RS18970at 382.684 kb on - strand, within EX31_RS18970at 382.684 kb on - strand, within EX31_RS18970at 382.737 kb on - strand, within EX31_RS18970at 382.737 kb on - strand, within EX31_RS18970at 382.741 kb on + strand, within EX31_RS18970at 382.742 kb on - strand, within EX31_RS18970at 382.795 kb on + strand, within EX31_RS18970at 382.796 kb on - strand, within EX31_RS18970at 382.796 kb on - strand, within EX31_RS18970at 382.796 kb on - strand, within EX31_RS18970at 382.796 kb on - strand, within EX31_RS18970at 382.832 kb on - strandat 382.839 kb on + strandat 382.839 kb on + strandat 382.839 kb on + strandat 382.840 kb on - strandat 382.840 kb on - strandat 382.844 kb on + strandat 382.845 kb on - strandat 382.845 kb on - strandat 382.845 kb on - strandat 382.845 kb on - strandat 382.845 kb on - strandat 382.846 kb on + strandat 382.846 kb on + strandat 382.846 kb on + strandat 382.846 kb on + strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.847 kb on - strandat 382.862 kb on + strandat 382.862 kb on + strandat 382.894 kb on + strandat 382.895 kb on - strandat 382.895 kb on - strandat 382.950 kb on + strandat 382.951 kb on - strandat 382.951 kb on - strandat 382.951 kb on - strandat 382.956 kb on + strandat 382.956 kb on + strandat 382.957 kb on - strandat 382.957 kb on - strandat 382.995 kb on + strandat 382.995 kb on + strandat 382.999 kb on + strandat 382.999 kb on + strandat 383.000 kb on - strandat 383.010 kb on + strandat 383.011 kb on - strandat 383.015 kb on + strandat 383.015 kb on + strandat 383.016 kb on - strandat 383.016 kb on - strandat 383.016 kb on - strandat 383.022 kb on + strandat 383.022 kb on + strandat 383.022 kb on + strandat 383.023 kb on - strandat 383.023 kb on - strandat 383.023 kb on - strandat 383.023 kb on - strandat 383.023 kb on - strandat 383.023 kb on - strandat 383.023 kb on - strandat 383.102 kb on + strandat 383.154 kb on - strandat 383.191 kb on + strandat 383.195 kb on - strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.213 kb on + strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.214 kb on - strandat 383.217 kb on + strandat 383.217 kb on + strandat 383.218 kb on - strandat 383.248 kb on + strandat 383.270 kb on - strandat 383.306 kb on + strandat 383.321 kb on - strand, within EX31_RS18975at 383.321 kb on - strand, within EX31_RS18975at 383.324 kb on + strand, within EX31_RS18975at 383.325 kb on - strand, within EX31_RS18975at 383.341 kb on + strand, within EX31_RS18975at 383.366 kb on + strand, within EX31_RS18975at 383.366 kb on + strand, within EX31_RS18975at 383.367 kb on - strand, within EX31_RS18975at 383.370 kb on + strand, within EX31_RS18975at 383.370 kb on + strand, within EX31_RS18975at 383.370 kb on + strand, within EX31_RS18975at 383.370 kb on + strand, within EX31_RS18975at 383.370 kb on + strand, within EX31_RS18975at 383.371 kb on - strand, within EX31_RS18975at 383.371 kb on - strand, within EX31_RS18975at 383.371 kb on - strand, within EX31_RS18975at 383.371 kb on - strand, within EX31_RS18975at 383.427 kb on + strand, within EX31_RS18975at 383.427 kb on + strand, within EX31_RS18975at 383.427 kb on + strand, within EX31_RS18975at 383.428 kb on - strand, within EX31_RS18975at 383.556 kb on + strand, within EX31_RS18975at 383.556 kb on + strand, within EX31_RS18975at 383.582 kb on + strand, within EX31_RS18975at 383.582 kb on + strand, within EX31_RS18975at 383.582 kb on + strand, within EX31_RS18975at 383.628 kb on - strand, within EX31_RS18975at 383.667 kb on + strand, within EX31_RS18975at 383.668 kb on - strand, within EX31_RS18975at 383.668 kb on - strand, within EX31_RS18975at 383.668 kb on - strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.727 kb on + strand, within EX31_RS18975at 383.728 kb on - strand, within EX31_RS18975at 383.728 kb on - strand, within EX31_RS18975at 383.728 kb on - strand, within EX31_RS18975at 383.728 kb on - strand, within EX31_RS18975at 383.787 kb on + strand, within EX31_RS18975at 383.787 kb on + strand, within EX31_RS18975at 383.787 kb on + strand, within EX31_RS18975at 383.788 kb on - strand, within EX31_RS18975at 383.788 kb on - strand, within EX31_RS18975at 383.788 kb on - strand, within EX31_RS18975at 383.788 kb on - strand, within EX31_RS18975

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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381,575 - EX31_RS18965 0.52 +1.0
381,593 - EX31_RS18965 0.53 +0.2
381,593 - EX31_RS18965 0.53 -0.0
381,626 - EX31_RS18965 0.56 -2.0
381,693 + EX31_RS18965 0.62 -1.0
381,693 + EX31_RS18965 0.62 +0.1
381,693 + EX31_RS18965 0.62 -0.3
381,694 - EX31_RS18965 0.62 -0.1
381,694 - EX31_RS18965 0.62 -0.2
381,694 - EX31_RS18965 0.62 -0.8
381,694 - EX31_RS18965 0.62 +0.1
381,706 + EX31_RS18965 0.63 -0.4
381,707 - EX31_RS18965 0.63 -0.1
381,726 - EX31_RS18965 0.65 +0.5
381,773 + EX31_RS18965 0.69 +0.2
381,774 - EX31_RS18965 0.69 -0.8
381,774 - EX31_RS18965 0.69 -0.3
381,849 + EX31_RS18965 0.76 +0.1
381,849 + EX31_RS18965 0.76 -1.5
381,849 + EX31_RS18965 0.76 +0.4
381,850 - EX31_RS18965 0.76 -1.0
381,850 - EX31_RS18965 0.76 -0.3
381,857 + EX31_RS18965 0.76 -0.4
381,858 - EX31_RS18965 0.76 +0.3
381,858 - EX31_RS18965 0.76 +0.9
381,861 + EX31_RS18965 0.77 -1.5
381,861 + EX31_RS18965 0.77 -0.1
381,862 - EX31_RS18965 0.77 +0.4
381,862 - EX31_RS18965 0.77 +0.7
381,906 - EX31_RS18965 0.81 +0.8
381,940 + EX31_RS18965 0.83 -0.6
381,975 + EX31_RS18965 0.87 -0.3
382,002 + EX31_RS18965 0.89 +0.6
382,002 + EX31_RS18965 0.89 -1.1
382,002 + EX31_RS18965 0.89 +0.2
382,002 + EX31_RS18965 0.89 +0.6
382,002 + EX31_RS18965 0.89 -1.1
382,002 + EX31_RS18965 0.89 +0.5
382,003 - EX31_RS18965 0.89 +0.2
382,003 - EX31_RS18965 0.89 +0.8
382,003 - EX31_RS18965 0.89 -0.5
382,003 - EX31_RS18965 0.89 +0.3
382,003 - EX31_RS18965 0.89 +0.3
382,003 - EX31_RS18965 0.89 -0.3
382,069 + -1.0
382,072 + -0.6
382,072 + -0.5
382,073 - +0.4
382,073 - -1.9
382,103 - -0.3
382,146 + +0.2
382,146 + +0.3
382,146 + -0.6
382,147 - -0.4
382,147 - +0.8
382,147 - +0.8
382,147 - +0.3
382,149 + -0.3
382,149 + -2.2
382,176 - +0.2
382,192 - +0.0
382,192 - -0.5
382,192 - -1.0
382,216 + +0.3
382,265 + +0.1
382,266 - +0.4
382,266 - +0.4
382,266 - +0.4
382,271 + -2.3
382,271 + +0.0
382,272 - +0.9
382,272 - -0.5
382,272 - -0.3
382,272 - +0.7
382,272 - -0.7
382,272 - +0.2
382,272 - +0.5
382,272 - +0.2
382,272 - +0.6
382,272 - -0.9
382,272 - +0.1
382,272 - +0.6
382,272 - +0.6
382,285 + +0.4
382,285 + -1.3
382,285 + +0.4
382,285 + +1.0
382,285 + +0.4
382,285 + +0.0
382,285 + -0.2
382,286 - -0.3
382,286 - -0.1
382,286 - -0.2
382,286 - -0.1
382,286 - -0.0
382,286 - +1.0
382,286 - +0.9
382,286 - +0.3
382,286 - +0.4
382,286 - -0.1
382,286 - -0.7
382,286 - +0.5
382,286 - -0.8
382,286 - -0.0
382,348 + -0.8
382,349 - +0.1
382,388 - -0.1
382,388 - +0.3
382,437 - +0.4
382,437 - +0.7
382,465 + -0.4
382,465 + +1.9
382,465 + +0.4
382,465 + -0.9
382,466 - -0.0
382,466 - +0.0
382,466 - +0.4
382,466 - +0.0
382,466 - -0.0
382,466 - +1.0
382,466 - +0.3
382,466 - +0.3
382,466 - +0.1
382,466 - +0.8
382,466 - +0.4
382,466 - +1.3
382,466 - -0.2
382,469 + +1.0
382,469 + -1.4
382,469 + -1.4
382,470 - +1.1
382,470 - +0.4
382,470 - +0.8
382,470 - +0.6
382,470 - +0.2
382,470 - +0.1
382,470 - +0.5
382,481 - +0.1
382,481 - +0.1
382,481 - +0.3
382,481 - +0.7
382,507 + +0.0
382,512 + +1.2
382,512 + +0.5
382,512 + -1.3
382,512 + -0.5
382,512 + +0.4
382,512 + -0.7
382,512 + +0.6
382,513 - -0.3
382,513 - -1.7
382,513 - -1.0
382,513 - -0.3
382,524 + -0.4
382,524 + +0.5
382,525 - +0.7
382,550 + +0.0
382,550 + +0.6
382,566 + -0.4
382,567 - +0.2
382,683 + EX31_RS18970 0.43 -0.2
382,684 - EX31_RS18970 0.44 -1.2
382,684 - EX31_RS18970 0.44 -0.2
382,737 - EX31_RS18970 0.64 -1.1
382,737 - EX31_RS18970 0.64 -1.1
382,741 + EX31_RS18970 0.65 -0.6
382,742 - EX31_RS18970 0.66 -1.5
382,795 + EX31_RS18970 0.85 -1.1
382,796 - EX31_RS18970 0.86 +0.4
382,796 - EX31_RS18970 0.86 -1.5
382,796 - EX31_RS18970 0.86 +0.7
382,796 - EX31_RS18970 0.86 -0.6
382,832 - +1.1
382,839 + -1.8
382,839 + -0.4
382,839 + -0.3
382,840 - -0.7
382,840 - +0.9
382,844 + -0.6
382,845 - +1.1
382,845 - +0.6
382,845 - -0.6
382,845 - -1.4
382,845 - -3.3
382,846 + +0.2
382,846 + -0.0
382,846 + -0.7
382,846 + +0.6
382,847 - -0.2
382,847 - -0.6
382,847 - +0.1
382,847 - +0.2
382,847 - +0.5
382,847 - +0.4
382,847 - +0.7
382,847 - -0.3
382,862 + +0.1
382,862 + +0.3
382,894 + +0.5
382,895 - +0.0
382,895 - +0.2
382,950 + -0.1
382,951 - +0.9
382,951 - -1.2
382,951 - +0.4
382,956 + -1.0
382,956 + -1.6
382,957 - +0.1
382,957 - -0.1
382,995 + +0.1
382,995 + -1.0
382,999 + -0.3
382,999 + -0.3
383,000 - +0.2
383,010 + -0.2
383,011 - -2.7
383,015 + -0.5
383,015 + +0.0
383,016 - -0.6
383,016 - +0.6
383,016 - -0.2
383,022 + +0.2
383,022 + -0.3
383,022 + -2.6
383,023 - +0.1
383,023 - +0.4
383,023 - +0.6
383,023 - -0.9
383,023 - +0.8
383,023 - +1.8
383,023 - -2.9
383,102 + -0.4
383,154 - -0.7
383,191 + -0.2
383,195 - +0.4
383,213 + +0.8
383,213 + +0.1
383,213 + +0.9
383,213 + +0.6
383,213 + +0.3
383,213 + -0.2
383,213 + +0.4
383,213 + -1.0
383,213 + -1.3
383,214 - -0.4
383,214 - +1.0
383,214 - -0.5
383,214 - +0.1
383,214 - +0.8
383,214 - +0.7
383,214 - +0.4
383,214 - -0.3
383,214 - -1.2
383,214 - +0.5
383,214 - +0.6
383,214 - -0.2
383,214 - +0.5
383,214 - +0.6
383,214 - +0.2
383,214 - +0.6
383,217 + -0.2
383,217 + -0.1
383,218 - -1.0
383,248 + +0.8
383,270 - +0.3
383,306 + +0.0
383,321 - EX31_RS18975 0.12 +0.2
383,321 - EX31_RS18975 0.12 -0.1
383,324 + EX31_RS18975 0.12 +0.5
383,325 - EX31_RS18975 0.12 -0.4
383,341 + EX31_RS18975 0.14 +0.3
383,366 + EX31_RS18975 0.18 -0.4
383,366 + EX31_RS18975 0.18 +0.3
383,367 - EX31_RS18975 0.18 -0.0
383,370 + EX31_RS18975 0.18 +0.6
383,370 + EX31_RS18975 0.18 +1.0
383,370 + EX31_RS18975 0.18 +0.6
383,370 + EX31_RS18975 0.18 +1.1
383,370 + EX31_RS18975 0.18 +0.6
383,371 - EX31_RS18975 0.18 +0.2
383,371 - EX31_RS18975 0.18 +0.2
383,371 - EX31_RS18975 0.18 +0.1
383,371 - EX31_RS18975 0.18 +0.2
383,427 + EX31_RS18975 0.26 -0.2
383,427 + EX31_RS18975 0.26 +1.0
383,427 + EX31_RS18975 0.26 +0.1
383,428 - EX31_RS18975 0.26 +1.0
383,556 + EX31_RS18975 0.43 -0.5
383,556 + EX31_RS18975 0.43 +0.3
383,582 + EX31_RS18975 0.47 +0.0
383,582 + EX31_RS18975 0.47 +1.0
383,582 + EX31_RS18975 0.47 +0.1
383,628 - EX31_RS18975 0.53 -0.5
383,667 + EX31_RS18975 0.58 +0.3
383,668 - EX31_RS18975 0.58 +1.0
383,668 - EX31_RS18975 0.58 -0.8
383,668 - EX31_RS18975 0.58 -2.7
383,727 + EX31_RS18975 0.66 +0.2
383,727 + EX31_RS18975 0.66 +0.6
383,727 + EX31_RS18975 0.66 +0.6
383,727 + EX31_RS18975 0.66 +0.1
383,727 + EX31_RS18975 0.66 +0.5
383,727 + EX31_RS18975 0.66 +0.1
383,727 + EX31_RS18975 0.66 +0.3
383,728 - EX31_RS18975 0.66 -0.4
383,728 - EX31_RS18975 0.66 +0.5
383,728 - EX31_RS18975 0.66 +1.0
383,728 - EX31_RS18975 0.66 +0.0
383,787 + EX31_RS18975 0.74 +0.9
383,787 + EX31_RS18975 0.74 +0.3
383,787 + EX31_RS18975 0.74 +0.3
383,788 - EX31_RS18975 0.74 +0.4
383,788 - EX31_RS18975 0.74 -0.2
383,788 - EX31_RS18975 0.74 -0.4
383,788 - EX31_RS18975 0.74 -0.8

Or see this region's nucleotide sequence