Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS17975 and EX31_RS17980 are separated by 106 nucleotides EX31_RS17980 and EX31_RS17985 are separated by 6 nucleotides EX31_RS17985 and EX31_RS17990 are separated by 98 nucleotides
EX31_RS17975: EX31_RS17975 - FtsH protease modulator YccA, at 154,513 to 155,178
_RS17975
EX31_RS17980: EX31_RS17980 - sulfurtransferase TusE, at 155,285 to 155,614
_RS17980
EX31_RS17985: EX31_RS17985 - acylphosphatase, at 155,621 to 155,899
_RS17985
EX31_RS17990: EX31_RS17990 - 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI, at 155,998 to 157,191
_RS17990
Position (kb) 155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.629 kb on + strand, within EX31_RS17975 at 154.629 kb on + strand, within EX31_RS17975 at 154.644 kb on + strand, within EX31_RS17975 at 154.645 kb on - strand, within EX31_RS17975 at 154.645 kb on - strand, within EX31_RS17975 at 154.696 kb on + strand, within EX31_RS17975 at 154.696 kb on + strand, within EX31_RS17975 at 154.697 kb on - strand, within EX31_RS17975 at 154.718 kb on - strand, within EX31_RS17975 at 154.748 kb on + strand, within EX31_RS17975 at 154.748 kb on + strand, within EX31_RS17975 at 154.773 kb on + strand, within EX31_RS17975 at 154.782 kb on + strand, within EX31_RS17975 at 154.782 kb on + strand, within EX31_RS17975 at 154.782 kb on + strand, within EX31_RS17975 at 154.782 kb on + strand, within EX31_RS17975 at 154.782 kb on + strand, within EX31_RS17975 at 154.783 kb on - strand, within EX31_RS17975 at 154.783 kb on - strand, within EX31_RS17975 at 154.783 kb on - strand, within EX31_RS17975 at 154.833 kb on + strand, within EX31_RS17975 at 154.833 kb on + strand, within EX31_RS17975 at 154.833 kb on + strand, within EX31_RS17975 at 154.834 kb on - strand, within EX31_RS17975 at 154.836 kb on + strand, within EX31_RS17975 at 154.836 kb on + strand, within EX31_RS17975 at 154.836 kb on + strand, within EX31_RS17975 at 154.837 kb on - strand, within EX31_RS17975 at 154.885 kb on + strand, within EX31_RS17975 at 154.886 kb on - strand, within EX31_RS17975 at 154.886 kb on - strand, within EX31_RS17975 at 154.886 kb on - strand, within EX31_RS17975 at 154.908 kb on + strand, within EX31_RS17975 at 154.908 kb on + strand, within EX31_RS17975 at 154.909 kb on - strand, within EX31_RS17975 at 154.909 kb on - strand, within EX31_RS17975 at 155.023 kb on - strand, within EX31_RS17975 at 155.064 kb on + strand, within EX31_RS17975 at 155.064 kb on + strand, within EX31_RS17975 at 155.064 kb on + strand, within EX31_RS17975 at 155.064 kb on + strand, within EX31_RS17975 at 155.065 kb on - strand, within EX31_RS17975 at 155.065 kb on - strand, within EX31_RS17975 at 155.065 kb on - strand, within EX31_RS17975 at 155.067 kb on + strand, within EX31_RS17975 at 155.068 kb on - strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.089 kb on + strand, within EX31_RS17975 at 155.090 kb on - strand, within EX31_RS17975 at 155.090 kb on - strand, within EX31_RS17975 at 155.090 kb on - strand, within EX31_RS17975 at 155.090 kb on - strand, within EX31_RS17975 at 155.091 kb on + strand, within EX31_RS17975 at 155.091 kb on + strand, within EX31_RS17975 at 155.091 kb on + strand, within EX31_RS17975 at 155.113 kb on + strand at 155.113 kb on + strand at 155.113 kb on + strand at 155.113 kb on + strand at 155.113 kb on + strand at 155.114 kb on - strand at 155.114 kb on - strand at 155.114 kb on - strand at 155.114 kb on - strand at 155.125 kb on + strand at 155.172 kb on + strand at 155.172 kb on + strand at 155.284 kb on + strand at 155.625 kb on + strand at 155.626 kb on - strand at 155.675 kb on + strand, within EX31_RS17985 at 155.735 kb on + strand, within EX31_RS17985 at 155.736 kb on - strand, within EX31_RS17985 at 155.736 kb on - strand, within EX31_RS17985 at 155.868 kb on + strand, within EX31_RS17985 at 155.868 kb on + strand, within EX31_RS17985 at 155.869 kb on - strand, within EX31_RS17985 at 155.869 kb on - strand, within EX31_RS17985 at 155.874 kb on + strand at 155.874 kb on + strand at 155.874 kb on + strand at 155.875 kb on - strand at 155.884 kb on + strand at 155.884 kb on + strand at 155.899 kb on + strand at 155.900 kb on - strand at 155.902 kb on + strand at 155.902 kb on + strand at 155.902 kb on + strand at 155.902 kb on + strand at 155.902 kb on + strand at 155.903 kb on - strand at 155.991 kb on + strand at 156.115 kb on - strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.116 kb on + strand at 156.117 kb on - strand at 156.117 kb on - strand at 156.117 kb on - strand at 156.117 kb on - strand at 156.117 kb on - strand at 156.117 kb on - strand at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.120 kb on + strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.121 kb on - strand, within EX31_RS17990 at 156.126 kb on - strand, within EX31_RS17990 at 156.160 kb on + strand, within EX31_RS17990 at 156.246 kb on - strand, within EX31_RS17990 at 156.246 kb on - strand, within EX31_RS17990 at 156.271 kb on + strand, within EX31_RS17990 at 156.272 kb on - strand, within EX31_RS17990 at 156.272 kb on - strand, within EX31_RS17990 at 156.274 kb on - strand, within EX31_RS17990 at 156.339 kb on + strand, within EX31_RS17990 at 156.339 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.518 kb on + strand, within EX31_RS17990 at 156.585 kb on + strand, within EX31_RS17990 at 156.585 kb on + strand, within EX31_RS17990 at 156.610 kb on + strand, within EX31_RS17990 at 156.610 kb on + strand, within EX31_RS17990 at 156.611 kb on - strand, within EX31_RS17990 at 156.611 kb on - strand, within EX31_RS17990 at 156.611 kb on - strand, within EX31_RS17990 at 156.645 kb on + strand, within EX31_RS17990 at 156.645 kb on + strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.646 kb on - strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.649 kb on + strand, within EX31_RS17990 at 156.685 kb on + strand, within EX31_RS17990 at 156.726 kb on + strand, within EX31_RS17990 at 156.726 kb on + strand, within EX31_RS17990 at 156.726 kb on + strand, within EX31_RS17990 at 156.727 kb on - strand, within EX31_RS17990 at 156.853 kb on - strand, within EX31_RS17990 at 156.853 kb on - strand, within EX31_RS17990
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 154,629 + EX31_RS17975 0.17 +1.6 154,629 + EX31_RS17975 0.17 -0.6 154,644 + EX31_RS17975 0.20 -0.7 154,645 - EX31_RS17975 0.20 +0.1 154,645 - EX31_RS17975 0.20 +0.3 154,696 + EX31_RS17975 0.27 -0.3 154,696 + EX31_RS17975 0.27 +0.3 154,697 - EX31_RS17975 0.28 -0.1 154,718 - EX31_RS17975 0.31 -0.5 154,748 + EX31_RS17975 0.35 +0.3 154,748 + EX31_RS17975 0.35 -0.4 154,773 + EX31_RS17975 0.39 +0.4 154,782 + EX31_RS17975 0.40 +0.5 154,782 + EX31_RS17975 0.40 -0.4 154,782 + EX31_RS17975 0.40 +0.3 154,782 + EX31_RS17975 0.40 +0.1 154,782 + EX31_RS17975 0.40 +0.3 154,783 - EX31_RS17975 0.41 -0.2 154,783 - EX31_RS17975 0.41 -0.5 154,783 - EX31_RS17975 0.41 -0.0 154,833 + EX31_RS17975 0.48 +0.1 154,833 + EX31_RS17975 0.48 -0.5 154,833 + EX31_RS17975 0.48 +0.6 154,834 - EX31_RS17975 0.48 -1.6 154,836 + EX31_RS17975 0.48 +0.4 154,836 + EX31_RS17975 0.48 +0.7 154,836 + EX31_RS17975 0.48 +0.0 154,837 - EX31_RS17975 0.49 -0.2 154,885 + EX31_RS17975 0.56 +0.4 154,886 - EX31_RS17975 0.56 -0.1 154,886 - EX31_RS17975 0.56 -2.0 154,886 - EX31_RS17975 0.56 -0.0 154,908 + EX31_RS17975 0.59 -0.3 154,908 + EX31_RS17975 0.59 -1.1 154,909 - EX31_RS17975 0.59 +0.4 154,909 - EX31_RS17975 0.59 -0.1 155,023 - EX31_RS17975 0.77 +0.8 155,064 + EX31_RS17975 0.83 +0.8 155,064 + EX31_RS17975 0.83 -0.6 155,064 + EX31_RS17975 0.83 +0.5 155,064 + EX31_RS17975 0.83 +0.6 155,065 - EX31_RS17975 0.83 -0.0 155,065 - EX31_RS17975 0.83 -0.4 155,065 - EX31_RS17975 0.83 -1.9 155,067 + EX31_RS17975 0.83 +0.0 155,068 - EX31_RS17975 0.83 -1.7 155,089 + EX31_RS17975 0.86 -1.7 155,089 + EX31_RS17975 0.86 +0.9 155,089 + EX31_RS17975 0.86 +0.1 155,089 + EX31_RS17975 0.86 -1.0 155,089 + EX31_RS17975 0.86 +1.2 155,089 + EX31_RS17975 0.86 +0.6 155,089 + EX31_RS17975 0.86 -0.0 155,089 + EX31_RS17975 0.86 +0.2 155,089 + EX31_RS17975 0.86 +0.0 155,090 - EX31_RS17975 0.87 +0.4 155,090 - EX31_RS17975 0.87 -2.0 155,090 - EX31_RS17975 0.87 -0.6 155,090 - EX31_RS17975 0.87 +0.1 155,091 + EX31_RS17975 0.87 -0.1 155,091 + EX31_RS17975 0.87 -0.2 155,091 + EX31_RS17975 0.87 -1.8 155,113 + -0.1 155,113 + +0.3 155,113 + -0.3 155,113 + +0.7 155,113 + -0.4 155,114 - -0.5 155,114 - +0.6 155,114 - -0.5 155,114 - +2.5 155,125 + +0.0 155,172 + +0.2 155,172 + -1.3 155,284 + -0.2 155,625 + -0.8 155,626 - -0.1 155,675 + EX31_RS17985 0.19 -1.0 155,735 + EX31_RS17985 0.41 -0.7 155,736 - EX31_RS17985 0.41 +0.7 155,736 - EX31_RS17985 0.41 -0.6 155,868 + EX31_RS17985 0.89 -0.8 155,868 + EX31_RS17985 0.89 -0.0 155,869 - EX31_RS17985 0.89 -1.8 155,869 - EX31_RS17985 0.89 -0.4 155,874 + -0.3 155,874 + -0.4 155,874 + -0.9 155,875 - +0.2 155,884 + -0.6 155,884 + +0.2 155,899 + +0.3 155,900 - +0.8 155,902 + +0.4 155,902 + +0.6 155,902 + -1.5 155,902 + -0.7 155,902 + +1.2 155,903 - -0.4 155,991 + -0.1 156,115 - +0.4 156,116 + +0.1 156,116 + +0.3 156,116 + +0.8 156,116 + -0.6 156,116 + +0.1 156,116 + +0.5 156,116 + +1.0 156,116 + +0.7 156,116 + -1.4 156,116 + -1.5 156,116 + -0.4 156,116 + -0.1 156,116 + +0.4 156,117 - -1.2 156,117 - -0.2 156,117 - -0.4 156,117 - +0.4 156,117 - -0.4 156,117 - +0.7 156,120 + EX31_RS17990 0.10 -0.3 156,120 + EX31_RS17990 0.10 -0.3 156,120 + EX31_RS17990 0.10 +0.4 156,120 + EX31_RS17990 0.10 +0.5 156,120 + EX31_RS17990 0.10 -0.3 156,120 + EX31_RS17990 0.10 -0.1 156,120 + EX31_RS17990 0.10 +0.5 156,120 + EX31_RS17990 0.10 +0.9 156,120 + EX31_RS17990 0.10 -0.6 156,120 + EX31_RS17990 0.10 +0.6 156,121 - EX31_RS17990 0.10 +0.8 156,121 - EX31_RS17990 0.10 -0.6 156,121 - EX31_RS17990 0.10 -0.1 156,121 - EX31_RS17990 0.10 +1.1 156,121 - EX31_RS17990 0.10 +0.4 156,121 - EX31_RS17990 0.10 -0.2 156,121 - EX31_RS17990 0.10 -0.6 156,121 - EX31_RS17990 0.10 -0.2 156,121 - EX31_RS17990 0.10 +1.3 156,121 - EX31_RS17990 0.10 -0.2 156,121 - EX31_RS17990 0.10 -0.1 156,126 - EX31_RS17990 0.11 -0.7 156,160 + EX31_RS17990 0.14 -0.7 156,246 - EX31_RS17990 0.21 +0.4 156,246 - EX31_RS17990 0.21 +0.2 156,271 + EX31_RS17990 0.23 +0.1 156,272 - EX31_RS17990 0.23 -0.4 156,272 - EX31_RS17990 0.23 -0.5 156,274 - EX31_RS17990 0.23 +0.1 156,339 + EX31_RS17990 0.29 +0.0 156,339 + EX31_RS17990 0.29 +0.3 156,518 + EX31_RS17990 0.44 +0.8 156,518 + EX31_RS17990 0.44 -0.5 156,518 + EX31_RS17990 0.44 -0.0 156,518 + EX31_RS17990 0.44 -0.8 156,518 + EX31_RS17990 0.44 -0.6 156,518 + EX31_RS17990 0.44 +0.1 156,518 + EX31_RS17990 0.44 -0.2 156,585 + EX31_RS17990 0.49 +0.2 156,585 + EX31_RS17990 0.49 +0.3 156,610 + EX31_RS17990 0.51 +0.2 156,610 + EX31_RS17990 0.51 +0.9 156,611 - EX31_RS17990 0.51 +0.5 156,611 - EX31_RS17990 0.51 +0.2 156,611 - EX31_RS17990 0.51 +0.8 156,645 + EX31_RS17990 0.54 +0.2 156,645 + EX31_RS17990 0.54 -0.3 156,646 - EX31_RS17990 0.54 -1.2 156,646 - EX31_RS17990 0.54 -0.2 156,646 - EX31_RS17990 0.54 -0.4 156,646 - EX31_RS17990 0.54 -1.3 156,649 + EX31_RS17990 0.55 +0.6 156,649 + EX31_RS17990 0.55 -0.3 156,649 + EX31_RS17990 0.55 -1.2 156,649 + EX31_RS17990 0.55 +0.5 156,685 + EX31_RS17990 0.58 +0.3 156,726 + EX31_RS17990 0.61 -0.6 156,726 + EX31_RS17990 0.61 +0.5 156,726 + EX31_RS17990 0.61 +0.2 156,727 - EX31_RS17990 0.61 +0.2 156,853 - EX31_RS17990 0.72 -3.2 156,853 - EX31_RS17990 0.72 -0.7
Or see this region's nucleotide sequence