Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS16720 and EX31_RS16725 are separated by 161 nucleotides EX31_RS16725 and EX31_RS16730 are separated by 147 nucleotides
EX31_RS16720: EX31_RS16720 - helix-turn-helix domain-containing protein, at 26,792 to 27,640
_RS16720
EX31_RS16725: EX31_RS16725 - phytanoyl-CoA dioxygenase, at 27,802 to 28,569
_RS16725
EX31_RS16730: EX31_RS16730 - LysR family transcriptional regulator, at 28,717 to 29,613
_RS16730
Position (kb) 27
28
29 Strain fitness (log2 ratio) -1
0
1 at 26.884 kb on - strand, within EX31_RS16720 at 26.956 kb on + strand, within EX31_RS16720 at 27.103 kb on + strand, within EX31_RS16720 at 27.104 kb on - strand, within EX31_RS16720 at 27.104 kb on - strand, within EX31_RS16720 at 27.106 kb on - strand, within EX31_RS16720 at 27.186 kb on - strand, within EX31_RS16720 at 27.186 kb on - strand, within EX31_RS16720 at 27.273 kb on - strand, within EX31_RS16720 at 27.433 kb on + strand, within EX31_RS16720 at 27.434 kb on - strand, within EX31_RS16720 at 27.435 kb on + strand, within EX31_RS16720 at 27.435 kb on + strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.436 kb on - strand, within EX31_RS16720 at 27.677 kb on - strand at 27.677 kb on - strand at 27.738 kb on - strand at 27.870 kb on + strand at 27.870 kb on + strand at 27.871 kb on - strand at 27.871 kb on - strand at 27.908 kb on + strand, within EX31_RS16725 at 27.909 kb on - strand, within EX31_RS16725 at 28.273 kb on - strand, within EX31_RS16725 at 28.471 kb on - strand, within EX31_RS16725 at 28.517 kb on - strand at 28.548 kb on - strand at 28.602 kb on + strand at 28.660 kb on + strand at 28.713 kb on + strand at 28.809 kb on - strand, within EX31_RS16730 at 28.853 kb on - strand, within EX31_RS16730 at 28.906 kb on + strand, within EX31_RS16730 at 29.226 kb on - strand, within EX31_RS16730 at 29.242 kb on + strand, within EX31_RS16730 at 29.242 kb on + strand, within EX31_RS16730 at 29.243 kb on - strand, within EX31_RS16730 at 29.243 kb on - strand, within EX31_RS16730 at 29.243 kb on - strand, within EX31_RS16730 at 29.337 kb on - strand, within EX31_RS16730 at 29.485 kb on + strand, within EX31_RS16730 at 29.486 kb on - strand, within EX31_RS16730 at 29.486 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.523 kb on - strand, within EX31_RS16730 at 29.559 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 26,884 - EX31_RS16720 0.11 +0.3 26,956 + EX31_RS16720 0.19 -0.4 27,103 + EX31_RS16720 0.37 -0.1 27,104 - EX31_RS16720 0.37 -0.7 27,104 - EX31_RS16720 0.37 +0.4 27,106 - EX31_RS16720 0.37 -0.6 27,186 - EX31_RS16720 0.46 +1.0 27,186 - EX31_RS16720 0.46 +0.4 27,273 - EX31_RS16720 0.57 +0.2 27,433 + EX31_RS16720 0.76 -0.2 27,434 - EX31_RS16720 0.76 +0.4 27,435 + EX31_RS16720 0.76 -0.2 27,435 + EX31_RS16720 0.76 -0.5 27,436 - EX31_RS16720 0.76 -1.2 27,436 - EX31_RS16720 0.76 +0.1 27,436 - EX31_RS16720 0.76 +0.1 27,677 - +0.0 27,677 - -1.7 27,738 - +0.2 27,870 + +1.5 27,870 + -0.5 27,871 - +0.3 27,871 - +0.7 27,908 + EX31_RS16725 0.14 +0.9 27,909 - EX31_RS16725 0.14 -1.1 28,273 - EX31_RS16725 0.61 -1.1 28,471 - EX31_RS16725 0.87 -0.5 28,517 - +0.0 28,548 - -0.8 28,602 + +0.5 28,660 + -0.3 28,713 + -0.9 28,809 - EX31_RS16730 0.10 -0.1 28,853 - EX31_RS16730 0.15 +1.5 28,906 + EX31_RS16730 0.21 +0.8 29,226 - EX31_RS16730 0.57 -0.5 29,242 + EX31_RS16730 0.59 +0.7 29,242 + EX31_RS16730 0.59 +0.5 29,243 - EX31_RS16730 0.59 +0.8 29,243 - EX31_RS16730 0.59 +0.3 29,243 - EX31_RS16730 0.59 -0.1 29,337 - EX31_RS16730 0.69 +0.1 29,485 + EX31_RS16730 0.86 -0.6 29,486 - EX31_RS16730 0.86 -0.0 29,486 - EX31_RS16730 0.86 -0.1 29,523 - EX31_RS16730 0.90 +1.7 29,523 - EX31_RS16730 0.90 -0.3 29,523 - EX31_RS16730 0.90 +0.9 29,523 - EX31_RS16730 0.90 -0.4 29,559 + -0.3
Or see this region's nucleotide sequence