Strain Fitness in Rahnella sp. WP5 around EX31_RS16600

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS16595 and EX31_RS16600 are separated by 3 nucleotidesEX31_RS16600 and EX31_RS16605 are separated by 14 nucleotides EX31_RS16595: EX31_RS16595 - deferrochelatase/peroxidase EfeB, at 478 to 1,749 _RS16595 EX31_RS16600: EX31_RS16600 - EfeM/EfeO family lipoprotein, at 1,753 to 2,976 _RS16600 EX31_RS16605: EX31_RS16605 - iron permease, at 2,991 to 4,619 _RS16605 Position (kb) 1 2 3Strain fitness (log2 ratio) -2 -1 0 1 2at 0.753 kb on + strand, within EX31_RS16595at 0.753 kb on + strand, within EX31_RS16595at 0.754 kb on - strand, within EX31_RS16595at 0.772 kb on - strand, within EX31_RS16595at 0.775 kb on + strand, within EX31_RS16595at 0.775 kb on + strand, within EX31_RS16595at 0.775 kb on + strand, within EX31_RS16595at 0.776 kb on - strand, within EX31_RS16595at 0.776 kb on - strand, within EX31_RS16595at 0.932 kb on - strand, within EX31_RS16595at 0.941 kb on + strand, within EX31_RS16595at 0.941 kb on + strand, within EX31_RS16595at 0.942 kb on - strand, within EX31_RS16595at 0.989 kb on + strand, within EX31_RS16595at 0.989 kb on + strand, within EX31_RS16595at 0.989 kb on + strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 0.990 kb on - strand, within EX31_RS16595at 1.035 kb on + strand, within EX31_RS16595at 1.231 kb on + strand, within EX31_RS16595at 1.231 kb on + strand, within EX31_RS16595at 1.232 kb on - strand, within EX31_RS16595at 1.361 kb on - strand, within EX31_RS16595at 1.381 kb on - strand, within EX31_RS16595at 1.517 kb on + strand, within EX31_RS16595at 1.517 kb on + strand, within EX31_RS16595at 1.517 kb on + strand, within EX31_RS16595at 1.517 kb on + strand, within EX31_RS16595at 1.517 kb on + strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.518 kb on - strand, within EX31_RS16595at 1.792 kb on - strandat 1.818 kb on + strandat 1.819 kb on - strandat 1.915 kb on - strand, within EX31_RS16600at 2.017 kb on + strand, within EX31_RS16600at 2.018 kb on - strand, within EX31_RS16600at 2.018 kb on - strand, within EX31_RS16600at 2.018 kb on - strand, within EX31_RS16600at 2.139 kb on - strand, within EX31_RS16600at 2.383 kb on - strand, within EX31_RS16600at 2.390 kb on + strand, within EX31_RS16600at 2.428 kb on - strand, within EX31_RS16600at 2.504 kb on + strand, within EX31_RS16600at 2.505 kb on - strand, within EX31_RS16600at 2.505 kb on - strand, within EX31_RS16600at 2.505 kb on - strand, within EX31_RS16600at 2.622 kb on - strand, within EX31_RS16600at 2.622 kb on - strand, within EX31_RS16600at 2.706 kb on + strand, within EX31_RS16600at 2.707 kb on - strand, within EX31_RS16600at 2.707 kb on - strand, within EX31_RS16600at 2.728 kb on + strand, within EX31_RS16600at 2.796 kb on + strand, within EX31_RS16600at 2.797 kb on - strand, within EX31_RS16600at 2.797 kb on - strand, within EX31_RS16600at 2.842 kb on - strand, within EX31_RS16600at 2.842 kb on - strand, within EX31_RS16600at 2.971 kb on - strandat 2.993 kb on - strandat 2.993 kb on - strandat 3.018 kb on + strandat 3.019 kb on - strandat 3.019 kb on - strandat 3.019 kb on - strandat 3.043 kb on + strandat 3.044 kb on - strandat 3.071 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.146 kb on + strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.147 kb on - strandat 3.148 kb on + strandat 3.149 kb on - strandat 3.149 kb on - strandat 3.149 kb on - strandat 3.167 kb on + strand, within EX31_RS16605at 3.447 kb on - strand, within EX31_RS16605at 3.447 kb on - strand, within EX31_RS16605at 3.510 kb on - strand, within EX31_RS16605at 3.658 kb on - strand, within EX31_RS16605at 3.692 kb on + strand, within EX31_RS16605at 3.692 kb on + strand, within EX31_RS16605at 3.730 kb on + strand, within EX31_RS16605at 3.731 kb on - strand, within EX31_RS16605at 3.731 kb on - strand, within EX31_RS16605at 3.731 kb on - strand, within EX31_RS16605

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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753 + EX31_RS16595 0.22 -0.1
753 + EX31_RS16595 0.22 -1.1
754 - EX31_RS16595 0.22 +0.3
772 - EX31_RS16595 0.23 -0.1
775 + EX31_RS16595 0.23 -0.0
775 + EX31_RS16595 0.23 +0.2
775 + EX31_RS16595 0.23 +0.5
776 - EX31_RS16595 0.23 +0.1
776 - EX31_RS16595 0.23 +0.7
932 - EX31_RS16595 0.36 +1.0
941 + EX31_RS16595 0.36 -0.2
941 + EX31_RS16595 0.36 +0.6
942 - EX31_RS16595 0.36 +0.0
989 + EX31_RS16595 0.40 +0.3
989 + EX31_RS16595 0.40 +0.3
989 + EX31_RS16595 0.40 +0.2
990 - EX31_RS16595 0.40 +1.0
990 - EX31_RS16595 0.40 +1.3
990 - EX31_RS16595 0.40 -0.3
990 - EX31_RS16595 0.40 +0.4
990 - EX31_RS16595 0.40 +0.3
990 - EX31_RS16595 0.40 +0.0
990 - EX31_RS16595 0.40 -0.4
990 - EX31_RS16595 0.40 +0.4
990 - EX31_RS16595 0.40 -0.1
1,035 + EX31_RS16595 0.44 +0.2
1,231 + EX31_RS16595 0.59 +0.3
1,231 + EX31_RS16595 0.59 +0.3
1,232 - EX31_RS16595 0.59 -0.2
1,361 - EX31_RS16595 0.69 -1.1
1,381 - EX31_RS16595 0.71 -0.0
1,517 + EX31_RS16595 0.82 -0.0
1,517 + EX31_RS16595 0.82 +0.4
1,517 + EX31_RS16595 0.82 -0.6
1,517 + EX31_RS16595 0.82 -1.3
1,517 + EX31_RS16595 0.82 -0.9
1,518 - EX31_RS16595 0.82 -0.1
1,518 - EX31_RS16595 0.82 +0.1
1,518 - EX31_RS16595 0.82 +0.1
1,518 - EX31_RS16595 0.82 +0.4
1,518 - EX31_RS16595 0.82 -0.2
1,518 - EX31_RS16595 0.82 +0.4
1,518 - EX31_RS16595 0.82 -0.0
1,518 - EX31_RS16595 0.82 -1.3
1,518 - EX31_RS16595 0.82 +0.3
1,792 - +0.8
1,818 + -2.6
1,819 - -1.0
1,915 - EX31_RS16600 0.13 -1.6
2,017 + EX31_RS16600 0.22 +0.6
2,018 - EX31_RS16600 0.22 -0.3
2,018 - EX31_RS16600 0.22 +0.4
2,018 - EX31_RS16600 0.22 +0.3
2,139 - EX31_RS16600 0.32 +0.6
2,383 - EX31_RS16600 0.51 +0.6
2,390 + EX31_RS16600 0.52 -0.3
2,428 - EX31_RS16600 0.55 +0.9
2,504 + EX31_RS16600 0.61 +1.8
2,505 - EX31_RS16600 0.61 -0.7
2,505 - EX31_RS16600 0.61 +0.1
2,505 - EX31_RS16600 0.61 -0.3
2,622 - EX31_RS16600 0.71 +0.9
2,622 - EX31_RS16600 0.71 +0.5
2,706 + EX31_RS16600 0.78 -0.0
2,707 - EX31_RS16600 0.78 +0.7
2,707 - EX31_RS16600 0.78 +1.1
2,728 + EX31_RS16600 0.80 +0.5
2,796 + EX31_RS16600 0.85 -0.1
2,797 - EX31_RS16600 0.85 +1.8
2,797 - EX31_RS16600 0.85 -0.4
2,842 - EX31_RS16600 0.89 +0.6
2,842 - EX31_RS16600 0.89 -0.1
2,971 - -2.5
2,993 - +0.4
2,993 - -0.3
3,018 + -0.5
3,019 - -0.7
3,019 - -0.3
3,019 - +0.2
3,043 + +0.2
3,044 - +1.2
3,071 + +0.7
3,146 + +0.6
3,146 + +0.6
3,146 + -0.1
3,146 + +0.0
3,146 + +0.4
3,146 + -1.7
3,146 + +0.3
3,146 + -0.6
3,146 + -0.2
3,146 + +1.2
3,146 + +0.7
3,146 + -0.1
3,146 + -0.4
3,146 + +0.1
3,146 + -0.5
3,146 + +0.5
3,146 + -1.3
3,146 + +0.5
3,147 - +0.6
3,147 - -2.3
3,147 - -1.4
3,147 - +0.4
3,147 - +1.2
3,147 - +0.8
3,147 - +1.2
3,147 - -0.2
3,147 - +1.0
3,147 - -1.4
3,147 - -0.3
3,147 - +0.2
3,147 - -0.4
3,147 - -0.8
3,147 - +0.6
3,147 - -0.6
3,147 - -0.2
3,147 - +0.7
3,147 - +1.1
3,147 - -0.1
3,147 - -0.6
3,147 - +0.5
3,147 - +0.8
3,147 - +0.0
3,147 - +0.5
3,147 - -0.1
3,147 - +0.3
3,147 - +0.9
3,147 - -0.6
3,147 - -0.3
3,148 + +0.9
3,149 - +1.0
3,149 - +0.3
3,149 - +0.4
3,167 + EX31_RS16605 0.11 +0.7
3,447 - EX31_RS16605 0.28 -0.2
3,447 - EX31_RS16605 0.28 +0.2
3,510 - EX31_RS16605 0.32 -0.6
3,658 - EX31_RS16605 0.41 -0.5
3,692 + EX31_RS16605 0.43 +1.1
3,692 + EX31_RS16605 0.43 +0.1
3,730 + EX31_RS16605 0.45 -0.4
3,731 - EX31_RS16605 0.45 +0.5
3,731 - EX31_RS16605 0.45 -0.9
3,731 - EX31_RS16605 0.45 -1.1

Or see this region's nucleotide sequence