Strain Fitness in Rahnella sp. WP5 around EX31_RS15555

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS15545 and EX31_RS15550 are separated by 4 nucleotidesEX31_RS15550 and EX31_RS15555 are separated by 12 nucleotidesEX31_RS15555 and EX31_RS15560 are separated by 109 nucleotidesEX31_RS15560 and EX31_RS15565 are separated by 237 nucleotides EX31_RS15545: EX31_RS15545 - amino acid ABC transporter permease, at 5,244 to 5,939 _RS15545 EX31_RS15550: EX31_RS15550 - amino acid ABC transporter permease, at 5,944 to 6,693 _RS15550 EX31_RS15555: EX31_RS15555 - amino acid ABC transporter ATP-binding protein, at 6,706 to 7,443 _RS15555 EX31_RS15560: EX31_RS15560 - hypothetical protein, at 7,553 to 7,906 _RS15560 EX31_RS15565: EX31_RS15565 - NmrA/HSCARG family protein, at 8,144 to 9,013 _RS15565 Position (kb) 6 7 8Strain fitness (log2 ratio) -2 -1 0 1 2at 5.793 kb on + strand, within EX31_RS15545at 5.793 kb on + strand, within EX31_RS15545at 5.793 kb on + strand, within EX31_RS15545at 5.793 kb on + strand, within EX31_RS15545at 5.793 kb on + strand, within EX31_RS15545at 5.793 kb on + strand, within EX31_RS15545at 5.794 kb on - strand, within EX31_RS15545at 5.794 kb on - strand, within EX31_RS15545at 5.808 kb on - strand, within EX31_RS15545at 5.842 kb on - strand, within EX31_RS15545at 5.863 kb on - strand, within EX31_RS15545at 5.937 kb on + strandat 5.938 kb on - strandat 5.938 kb on - strandat 6.033 kb on + strand, within EX31_RS15550at 6.034 kb on - strand, within EX31_RS15550at 6.034 kb on - strand, within EX31_RS15550at 6.081 kb on + strand, within EX31_RS15550at 6.148 kb on + strand, within EX31_RS15550at 6.193 kb on + strand, within EX31_RS15550at 6.194 kb on - strand, within EX31_RS15550at 6.194 kb on - strand, within EX31_RS15550at 6.252 kb on + strand, within EX31_RS15550at 6.253 kb on - strand, within EX31_RS15550at 6.265 kb on + strand, within EX31_RS15550at 6.265 kb on + strand, within EX31_RS15550at 6.266 kb on - strand, within EX31_RS15550at 6.277 kb on + strand, within EX31_RS15550at 6.277 kb on + strand, within EX31_RS15550at 6.277 kb on + strand, within EX31_RS15550at 6.277 kb on + strand, within EX31_RS15550at 6.277 kb on + strand, within EX31_RS15550at 6.277 kb on + strand, within EX31_RS15550at 6.278 kb on - strand, within EX31_RS15550at 6.279 kb on + strand, within EX31_RS15550at 6.328 kb on + strand, within EX31_RS15550at 6.382 kb on - strand, within EX31_RS15550at 6.400 kb on + strand, within EX31_RS15550at 6.400 kb on + strand, within EX31_RS15550at 6.400 kb on + strand, within EX31_RS15550at 6.400 kb on + strand, within EX31_RS15550at 6.400 kb on + strand, within EX31_RS15550at 6.400 kb on + strand, within EX31_RS15550at 6.401 kb on - strand, within EX31_RS15550at 6.401 kb on - strand, within EX31_RS15550at 6.438 kb on + strand, within EX31_RS15550at 6.438 kb on + strand, within EX31_RS15550at 6.439 kb on - strand, within EX31_RS15550at 6.445 kb on - strand, within EX31_RS15550at 6.471 kb on + strand, within EX31_RS15550at 6.471 kb on + strand, within EX31_RS15550at 6.472 kb on - strand, within EX31_RS15550at 6.565 kb on + strand, within EX31_RS15550at 6.565 kb on + strand, within EX31_RS15550at 6.565 kb on + strand, within EX31_RS15550at 6.565 kb on + strand, within EX31_RS15550at 6.565 kb on + strand, within EX31_RS15550at 6.565 kb on + strand, within EX31_RS15550at 6.566 kb on - strand, within EX31_RS15550at 6.566 kb on - strand, within EX31_RS15550at 6.566 kb on - strand, within EX31_RS15550at 6.566 kb on - strand, within EX31_RS15550at 6.600 kb on + strand, within EX31_RS15550at 6.691 kb on + strandat 6.691 kb on + strandat 6.694 kb on + strandat 6.695 kb on - strandat 6.722 kb on + strandat 6.723 kb on - strandat 6.723 kb on - strandat 6.723 kb on - strandat 6.738 kb on + strandat 6.906 kb on + strand, within EX31_RS15555at 7.092 kb on - strand, within EX31_RS15555at 7.272 kb on + strand, within EX31_RS15555at 7.273 kb on - strand, within EX31_RS15555at 7.338 kb on + strand, within EX31_RS15555at 7.422 kb on - strandat 7.442 kb on - strandat 7.446 kb on - strandat 7.458 kb on + strandat 7.458 kb on + strandat 7.508 kb on + strandat 7.508 kb on + strandat 7.508 kb on + strandat 7.526 kb on + strandat 7.526 kb on + strandat 7.526 kb on + strandat 7.527 kb on - strandat 7.530 kb on + strandat 7.530 kb on + strandat 7.531 kb on - strandat 7.531 kb on - strandat 7.531 kb on - strandat 7.531 kb on - strandat 7.546 kb on + strandat 7.546 kb on + strandat 7.547 kb on - strandat 7.548 kb on + strandat 7.548 kb on + strandat 7.548 kb on + strandat 7.551 kb on + strandat 7.552 kb on - strandat 7.552 kb on - strandat 7.646 kb on - strand, within EX31_RS15560at 7.646 kb on - strand, within EX31_RS15560at 7.651 kb on + strand, within EX31_RS15560at 7.656 kb on + strand, within EX31_RS15560at 7.656 kb on + strand, within EX31_RS15560at 7.656 kb on + strand, within EX31_RS15560at 7.657 kb on - strand, within EX31_RS15560at 7.657 kb on - strand, within EX31_RS15560at 7.685 kb on + strand, within EX31_RS15560at 7.686 kb on - strand, within EX31_RS15560at 7.724 kb on + strand, within EX31_RS15560at 7.725 kb on - strand, within EX31_RS15560at 7.725 kb on - strand, within EX31_RS15560at 7.725 kb on - strand, within EX31_RS15560at 7.725 kb on - strand, within EX31_RS15560at 7.795 kb on + strand, within EX31_RS15560at 7.838 kb on - strand, within EX31_RS15560at 7.865 kb on - strand, within EX31_RS15560at 7.865 kb on - strand, within EX31_RS15560at 7.865 kb on - strand, within EX31_RS15560at 7.866 kb on + strand, within EX31_RS15560at 7.866 kb on + strand, within EX31_RS15560at 7.866 kb on + strand, within EX31_RS15560at 7.867 kb on - strand, within EX31_RS15560at 7.867 kb on - strand, within EX31_RS15560at 7.906 kb on + strandat 7.907 kb on - strandat 7.930 kb on - strandat 7.931 kb on + strandat 7.931 kb on + strandat 7.932 kb on - strandat 8.027 kb on - strandat 8.030 kb on + strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.062 kb on + strandat 8.063 kb on - strandat 8.063 kb on - strandat 8.120 kb on + strandat 8.181 kb on + strandat 8.182 kb on - strandat 8.182 kb on - strandat 8.182 kb on - strandat 8.213 kb on + strandat 8.261 kb on - strand, within EX31_RS15565at 8.286 kb on + strand, within EX31_RS15565at 8.287 kb on - strand, within EX31_RS15565at 8.308 kb on - strand, within EX31_RS15565at 8.308 kb on - strand, within EX31_RS15565at 8.308 kb on - strand, within EX31_RS15565at 8.352 kb on + strand, within EX31_RS15565at 8.357 kb on - strand, within EX31_RS15565

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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5,793 + EX31_RS15545 0.79 -0.1
5,793 + EX31_RS15545 0.79 -0.4
5,793 + EX31_RS15545 0.79 -0.8
5,793 + EX31_RS15545 0.79 -1.3
5,793 + EX31_RS15545 0.79 +0.3
5,793 + EX31_RS15545 0.79 +0.4
5,794 - EX31_RS15545 0.79 +0.5
5,794 - EX31_RS15545 0.79 -0.7
5,808 - EX31_RS15545 0.81 +0.1
5,842 - EX31_RS15545 0.86 -0.0
5,863 - EX31_RS15545 0.89 +0.7
5,937 + +0.6
5,938 - +0.1
5,938 - -0.6
6,033 + EX31_RS15550 0.12 +0.2
6,034 - EX31_RS15550 0.12 -0.4
6,034 - EX31_RS15550 0.12 +0.6
6,081 + EX31_RS15550 0.18 +0.3
6,148 + EX31_RS15550 0.27 +1.3
6,193 + EX31_RS15550 0.33 +0.8
6,194 - EX31_RS15550 0.33 +0.7
6,194 - EX31_RS15550 0.33 -1.5
6,252 + EX31_RS15550 0.41 -0.1
6,253 - EX31_RS15550 0.41 +0.6
6,265 + EX31_RS15550 0.43 -0.6
6,265 + EX31_RS15550 0.43 -1.2
6,266 - EX31_RS15550 0.43 -1.7
6,277 + EX31_RS15550 0.44 -0.3
6,277 + EX31_RS15550 0.44 -1.5
6,277 + EX31_RS15550 0.44 -1.2
6,277 + EX31_RS15550 0.44 +0.2
6,277 + EX31_RS15550 0.44 +0.8
6,277 + EX31_RS15550 0.44 -0.0
6,278 - EX31_RS15550 0.45 +0.3
6,279 + EX31_RS15550 0.45 -0.0
6,328 + EX31_RS15550 0.51 +0.9
6,382 - EX31_RS15550 0.58 +0.1
6,400 + EX31_RS15550 0.61 +0.8
6,400 + EX31_RS15550 0.61 +0.5
6,400 + EX31_RS15550 0.61 -0.1
6,400 + EX31_RS15550 0.61 +1.9
6,400 + EX31_RS15550 0.61 +1.2
6,400 + EX31_RS15550 0.61 -0.5
6,401 - EX31_RS15550 0.61 +0.7
6,401 - EX31_RS15550 0.61 -2.3
6,438 + EX31_RS15550 0.66 +0.2
6,438 + EX31_RS15550 0.66 -0.3
6,439 - EX31_RS15550 0.66 +0.4
6,445 - EX31_RS15550 0.67 +0.0
6,471 + EX31_RS15550 0.70 +0.7
6,471 + EX31_RS15550 0.70 +0.2
6,472 - EX31_RS15550 0.70 -0.5
6,565 + EX31_RS15550 0.83 -0.6
6,565 + EX31_RS15550 0.83 +0.3
6,565 + EX31_RS15550 0.83 +1.5
6,565 + EX31_RS15550 0.83 -0.2
6,565 + EX31_RS15550 0.83 -1.2
6,565 + EX31_RS15550 0.83 +0.3
6,566 - EX31_RS15550 0.83 +0.3
6,566 - EX31_RS15550 0.83 -1.5
6,566 - EX31_RS15550 0.83 -0.9
6,566 - EX31_RS15550 0.83 +0.7
6,600 + EX31_RS15550 0.87 -0.5
6,691 + +0.2
6,691 + +1.0
6,694 + -1.6
6,695 - -0.3
6,722 + +1.0
6,723 - +0.6
6,723 - -0.3
6,723 - +0.1
6,738 + -0.6
6,906 + EX31_RS15555 0.27 -0.8
7,092 - EX31_RS15555 0.52 +0.0
7,272 + EX31_RS15555 0.77 -1.3
7,273 - EX31_RS15555 0.77 +0.0
7,338 + EX31_RS15555 0.86 -1.5
7,422 - +0.0
7,442 - +0.6
7,446 - -0.3
7,458 + -2.2
7,458 + +1.0
7,508 + -1.0
7,508 + -0.9
7,508 + -0.2
7,526 + +0.1
7,526 + +0.1
7,526 + -2.2
7,527 - -0.3
7,530 + -0.5
7,530 + +0.5
7,531 - -0.9
7,531 - -1.2
7,531 - -0.1
7,531 - +1.1
7,546 + -1.2
7,546 + +0.0
7,547 - -1.0
7,548 + -1.3
7,548 + -0.4
7,548 + -1.2
7,551 + +0.9
7,552 - -0.6
7,552 - -1.1
7,646 - EX31_RS15560 0.26 -0.9
7,646 - EX31_RS15560 0.26 -1.3
7,651 + EX31_RS15560 0.28 +0.4
7,656 + EX31_RS15560 0.29 -1.3
7,656 + EX31_RS15560 0.29 -1.2
7,656 + EX31_RS15560 0.29 +0.6
7,657 - EX31_RS15560 0.29 -0.5
7,657 - EX31_RS15560 0.29 -0.7
7,685 + EX31_RS15560 0.37 -0.5
7,686 - EX31_RS15560 0.38 +0.1
7,724 + EX31_RS15560 0.48 -1.4
7,725 - EX31_RS15560 0.49 +0.4
7,725 - EX31_RS15560 0.49 +0.4
7,725 - EX31_RS15560 0.49 -0.4
7,725 - EX31_RS15560 0.49 -0.9
7,795 + EX31_RS15560 0.68 -0.1
7,838 - EX31_RS15560 0.81 -0.7
7,865 - EX31_RS15560 0.88 -0.2
7,865 - EX31_RS15560 0.88 +0.6
7,865 - EX31_RS15560 0.88 +1.5
7,866 + EX31_RS15560 0.88 -1.7
7,866 + EX31_RS15560 0.88 +0.6
7,866 + EX31_RS15560 0.88 +0.1
7,867 - EX31_RS15560 0.89 +1.6
7,867 - EX31_RS15560 0.89 +0.5
7,906 + +0.8
7,907 - -0.7
7,930 - +0.1
7,931 + -2.5
7,931 + +0.4
7,932 - +0.7
8,027 - -0.0
8,030 + -0.5
8,031 - +0.1
8,031 - -0.7
8,031 - +0.8
8,031 - -0.5
8,062 + -0.1
8,063 - -2.0
8,063 - +0.3
8,120 + -0.2
8,181 + -1.0
8,182 - +0.9
8,182 - +0.2
8,182 - -0.6
8,213 + -0.3
8,261 - EX31_RS15565 0.13 +0.6
8,286 + EX31_RS15565 0.16 -0.8
8,287 - EX31_RS15565 0.16 +1.3
8,308 - EX31_RS15565 0.19 -0.1
8,308 - EX31_RS15565 0.19 +1.0
8,308 - EX31_RS15565 0.19 -0.5
8,352 + EX31_RS15565 0.24 -0.9
8,357 - EX31_RS15565 0.24 -1.4

Or see this region's nucleotide sequence