Strain Fitness in Rahnella sp. WP5 around EX31_RS15475

Experiment: NL-CCM; high oxygen

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM; high oxygen
48,689	+				-1.3
48,740	+		EX31_RS15470	0.14	+0.3
48,740	+		EX31_RS15470	0.14	-0.2
48,772	+		EX31_RS15470	0.17	-1.2
48,825	+		EX31_RS15470	0.23	+0.2
48,826	-		EX31_RS15470	0.23	-0.7
48,887	+		EX31_RS15470	0.30	-1.6
48,887	+		EX31_RS15470	0.30	-0.4
48,887	+		EX31_RS15470	0.30	-0.1
48,887	+		EX31_RS15470	0.30	-0.9
48,887	+		EX31_RS15470	0.30	-3.4
48,887	+		EX31_RS15470	0.30	+0.1
48,887	+		EX31_RS15470	0.30	+1.2
48,887	+		EX31_RS15470	0.30	-0.1
48,887	+		EX31_RS15470	0.30	+0.2
48,888	-		EX31_RS15470	0.30	+0.4
49,022	+		EX31_RS15470	0.44	+1.0
49,023	-		EX31_RS15470	0.44	-0.8
49,027	+		EX31_RS15470	0.45	+0.4
49,028	-		EX31_RS15470	0.45	-2.2
49,028	-		EX31_RS15470	0.45	+2.2
49,028	-		EX31_RS15470	0.45	+1.5
49,127	+		EX31_RS15470	0.56	-0.1
49,128	-		EX31_RS15470	0.56	-0.2
49,146	+		EX31_RS15470	0.58	-0.2
49,146	+		EX31_RS15470	0.58	+0.2
49,146	+		EX31_RS15470	0.58	-0.1
49,146	+		EX31_RS15470	0.58	+1.1
49,146	+		EX31_RS15470	0.58	+1.2
49,146	+		EX31_RS15470	0.58	-1.0
49,147	-		EX31_RS15470	0.58	-0.3
49,147	-		EX31_RS15470	0.58	-1.7
49,148	+		EX31_RS15470	0.58	-0.3
49,148	+		EX31_RS15470	0.58	-0.3
49,148	+		EX31_RS15470	0.58	-0.2
49,148	+		EX31_RS15470	0.58	-0.2
49,148	+		EX31_RS15470	0.58	-0.3
49,148	+		EX31_RS15470	0.58	-0.1
49,148	+		EX31_RS15470	0.58	+0.1
49,148	+		EX31_RS15470	0.58	-0.2
49,148	+		EX31_RS15470	0.58	-0.2
49,148	+		EX31_RS15470	0.58	-0.8
49,148	+		EX31_RS15470	0.58	-0.6
49,148	+		EX31_RS15470	0.58	-0.3
49,148	+		EX31_RS15470	0.58	-0.2
49,149	-		EX31_RS15470	0.58	+0.1
49,149	-		EX31_RS15470	0.58	+1.6
49,149	-		EX31_RS15470	0.58	-0.2
49,149	-		EX31_RS15470	0.58	-0.4
49,149	-		EX31_RS15470	0.58	-0.3
49,149	-		EX31_RS15470	0.58	-0.5
49,149	-		EX31_RS15470	0.58	-0.7
49,149	-		EX31_RS15470	0.58	-0.2
49,149	-		EX31_RS15470	0.58	-0.8
49,149	-		EX31_RS15470	0.58	+0.2
49,149	-		EX31_RS15470	0.58	-0.1
49,149	-		EX31_RS15470	0.58	+0.5
49,149	-		EX31_RS15470	0.58	+0.1
49,149	-		EX31_RS15470	0.58	-0.4
49,149	-		EX31_RS15470	0.58	-0.2
49,149	-		EX31_RS15470	0.58	-0.0
49,151	+		EX31_RS15470	0.58	-0.8
49,152	-		EX31_RS15470	0.58	+0.0
49,152	-		EX31_RS15470	0.58	+0.7
49,152	-		EX31_RS15470	0.58	+0.4
49,152	-		EX31_RS15470	0.58	+0.8
49,159	-		EX31_RS15470	0.59	+0.5
49,232	+		EX31_RS15470	0.67	+1.0
49,233	-		EX31_RS15470	0.67	-0.7
49,274	+		EX31_RS15470	0.72	-0.0
49,328	+		EX31_RS15470	0.77	-1.4
49,367	-		EX31_RS15470	0.82	+0.3
49,367	-		EX31_RS15470	0.82	+0.2
49,381	+		EX31_RS15470	0.83	+0.1
49,381	+		EX31_RS15470	0.83	+0.8
49,381	+		EX31_RS15470	0.83	-0.3
49,382	-		EX31_RS15470	0.83	-0.6
49,382	-		EX31_RS15470	0.83	+1.1
49,382	-		EX31_RS15470	0.83	-0.3
49,382	-		EX31_RS15470	0.83	+0.1
49,382	-		EX31_RS15470	0.83	-0.3
49,382	-		EX31_RS15470	0.83	+0.3
49,382	-		EX31_RS15470	0.83	+0.8
49,382	-		EX31_RS15470	0.83	-0.1
49,392	-		EX31_RS15470	0.84	-1.5
49,396	+		EX31_RS15470	0.85	-0.2
49,396	+		EX31_RS15470	0.85	+0.1
49,396	+		EX31_RS15470	0.85	+0.4
49,397	-		EX31_RS15470	0.85	+0.2
49,397	-		EX31_RS15470	0.85	-0.7
49,397	-		EX31_RS15470	0.85	+0.0
49,409	+		EX31_RS15470	0.86	+0.2
49,409	+		EX31_RS15470	0.86	-1.3
49,409	+		EX31_RS15470	0.86	+0.6
49,410	-		EX31_RS15470	0.86	+0.1
49,487	+				-0.8
49,491	-				-2.0
49,501	+				+1.3
49,502	-				-2.7
49,502	-				-1.0
49,511	-				-0.2
49,552	+				+0.3
49,553	-				+0.7
49,553	-				-0.5
49,586	+				-1.0
49,586	+				-2.8
49,586	+				-0.1
49,586	+				+0.3
49,586	+				+0.1
49,586	+				-0.6
49,586	+				+0.2
49,586	+				-0.1
49,586	+				-0.8
49,586	+				+0.3
49,586	+				-0.1
49,586	+				-1.5
49,586	+				-0.3
49,586	+				-0.7
49,586	+				-0.5
49,586	+				-1.1
49,587	-				-1.1
49,587	-				-0.3
49,587	-				+0.0
49,587	-				-0.9
49,587	-				-1.5
49,587	-				+0.4
49,587	-				-0.2
49,587	-				+0.2
49,591	+				-0.1
49,592	-				+0.2
49,599	+				+0.2
49,599	+				+0.1
49,633	+				-0.8
49,633	+				+0.1
49,633	+				-0.5
49,633	+				-0.3
49,633	+				+0.3
49,634	-				+0.4
49,639	+				-0.6
49,665	+				-1.4
49,673	-				+0.8
49,735	+		EX31_RS15475	0.39	-1.4
49,766	+		EX31_RS15475	0.55	+1.3
49,766	+		EX31_RS15475	0.55	+0.4
49,766	+		EX31_RS15475	0.55	-0.6
49,766	+		EX31_RS15475	0.55	+0.2
49,766	+		EX31_RS15475	0.55	-0.2
49,766	+		EX31_RS15475	0.55	-0.0
49,766	+		EX31_RS15475	0.55	+1.3
49,766	+		EX31_RS15475	0.55	+0.1
49,766	+		EX31_RS15475	0.55	+0.2
49,766	+		EX31_RS15475	0.55	-0.2
49,766	+		EX31_RS15475	0.55	+0.2
49,766	+		EX31_RS15475	0.55	+0.2
49,767	-		EX31_RS15475	0.55	+1.0
49,767	-		EX31_RS15475	0.55	-0.4
49,767	-		EX31_RS15475	0.55	-0.3
49,767	-		EX31_RS15475	0.55	+1.4
49,767	-		EX31_RS15475	0.55	+0.7
49,767	-		EX31_RS15475	0.55	-0.8
49,767	-		EX31_RS15475	0.55	+0.0
49,767	-		EX31_RS15475	0.55	+1.3
49,767	-		EX31_RS15475	0.55	-0.7
49,772	+		EX31_RS15475	0.58	-0.4
49,772	+		EX31_RS15475	0.58	-0.0
49,772	+		EX31_RS15475	0.58	-0.9
49,772	+		EX31_RS15475	0.58	+0.4
49,772	+		EX31_RS15475	0.58	+0.4
49,772	+		EX31_RS15475	0.58	+0.1
49,772	+		EX31_RS15475	0.58	+0.3
49,772	+		EX31_RS15475	0.58	+0.3
49,772	+		EX31_RS15475	0.58	+0.5
49,772	+		EX31_RS15475	0.58	+0.2
49,772	+		EX31_RS15475	0.58	+1.0
49,772	+		EX31_RS15475	0.58	-0.5
49,773	-		EX31_RS15475	0.58	+1.5
49,773	-		EX31_RS15475	0.58	+0.5
49,773	-		EX31_RS15475	0.58	-1.4
49,773	-		EX31_RS15475	0.58	-1.2
49,773	-		EX31_RS15475	0.58	+1.0
49,773	-		EX31_RS15475	0.58	-1.0
49,773	-		EX31_RS15475	0.58	-0.1
49,773	-		EX31_RS15475	0.58	+0.5
49,773	-		EX31_RS15475	0.58	+0.4
49,773	-		EX31_RS15475	0.58	-2.8
49,773	-		EX31_RS15475	0.58	-0.4
49,773	-		EX31_RS15475	0.58	+1.2
49,773	-		EX31_RS15475	0.58	-0.1
49,773	-		EX31_RS15475	0.58	+1.6
49,773	-		EX31_RS15475	0.58	+0.1
49,773	-		EX31_RS15475	0.58	-0.0
49,791	+		EX31_RS15475	0.67	-2.0
49,791	+		EX31_RS15475	0.67	+0.8
49,791	+		EX31_RS15475	0.67	-1.0
49,791	+		EX31_RS15475	0.67	+0.8
49,791	+		EX31_RS15475	0.67	+0.2
49,963	+				-0.1
49,963	+				-0.2
49,964	-				+0.9
49,964	-				+0.7
49,964	-				-0.5
49,964	-				-0.7
49,964	-				-1.2
49,964	-				+0.7
49,977	-				+0.0
49,977	-				+1.0
50,002	+				-0.7
50,002	+				-0.4
50,003	-				-0.6
50,003	-				+0.8
50,003	-				-0.9
50,003	-				-0.4
50,003	-				+0.2
50,003	-				-0.5
50,003	-				-0.0
50,006	+				-0.1
50,007	-				+0.5
50,007	-				+0.6
50,050	+		EX31_RS15480	0.20	-0.2
50,051	-		EX31_RS15480	0.20	-1.4
50,051	-		EX31_RS15480	0.20	+1.0
50,100	+		EX31_RS15480	0.34	+1.0
50,100	+		EX31_RS15480	0.34	+1.8
50,100	+		EX31_RS15480	0.34	-1.4
50,100	+		EX31_RS15480	0.34	-1.1
50,100	+		EX31_RS15480	0.34	-0.4
50,100	+		EX31_RS15480	0.34	-0.3
50,100	+		EX31_RS15480	0.34	-1.9
50,100	+		EX31_RS15480	0.34	+0.1
50,100	+		EX31_RS15480	0.34	+0.3
50,100	+		EX31_RS15480	0.34	-0.3
50,101	-		EX31_RS15480	0.34	-0.5
50,101	-		EX31_RS15480	0.34	+0.7
50,101	-		EX31_RS15480	0.34	-0.4
50,106	+		EX31_RS15480	0.36	+0.4
50,106	+		EX31_RS15480	0.36	+0.4
50,221	+		EX31_RS15480	0.68	+0.6
50,222	-		EX31_RS15480	0.68	-0.5
50,222	-		EX31_RS15480	0.68	-1.1
50,248	-		EX31_RS15480	0.76	+0.1
50,281	+		EX31_RS15480	0.85	+0.2
50,281	+		EX31_RS15480	0.85	+0.1
50,282	-		EX31_RS15480	0.85	-0.3
50,301	+				-1.3
50,301	+				-0.3
50,301	+				+1.5
50,301	+				-0.8
50,301	+				+0.5
50,301	+				-0.9
50,301	+				+1.1
50,301	+				+0.2
50,302	-				-0.7
50,302	-				-0.4
50,302	-				+0.1
50,302	-				+2.1
50,302	-				-0.1
50,302	-				+0.4
50,302	-				-1.0
50,302	-				-0.9
50,302	-				+0.0
50,302	-				+0.5
50,345	+				+0.6
50,346	-				+0.1
50,366	+				-0.1
50,366	+				+0.7
50,367	-				+0.2
50,367	-				+0.5
50,377	-				-0.1
50,377	-				+0.4
50,377	-				+0.4
50,377	-				-0.4
50,404	+				+0.2
50,404	+				-0.1
50,404	+				+0.3
50,405	-				+1.3
50,453	+		EX31_RS15485	0.13	+0.3
50,453	+		EX31_RS15485	0.13	+1.2
50,453	+		EX31_RS15485	0.13	-0.5
50,568	+		EX31_RS15485	0.31	-0.5
50,568	+		EX31_RS15485	0.31	+0.7
50,568	+		EX31_RS15485	0.31	-0.6
50,568	+		EX31_RS15485	0.31	+0.7
50,568	+		EX31_RS15485	0.31	+0.4
50,568	+		EX31_RS15485	0.31	-1.0
50,569	-		EX31_RS15485	0.31	-0.5
50,569	-		EX31_RS15485	0.31	-0.2
50,569	-		EX31_RS15485	0.31	-0.1
50,569	-		EX31_RS15485	0.31	-0.8
50,569	-		EX31_RS15485	0.31	-0.3
50,583	+		EX31_RS15485	0.33	-0.5
50,584	-		EX31_RS15485	0.33	-0.3
50,584	-		EX31_RS15485	0.33	-0.1
50,656	+		EX31_RS15485	0.45	+1.5
50,656	+		EX31_RS15485	0.45	+0.9
50,656	+		EX31_RS15485	0.45	-2.6
50,656	+		EX31_RS15485	0.45	-0.9
50,657	-		EX31_RS15485	0.45	-0.3
50,657	-		EX31_RS15485	0.45	+0.3
50,658	+		EX31_RS15485	0.45	-0.0
50,658	+		EX31_RS15485	0.45	+0.6
50,658	+		EX31_RS15485	0.45	+0.5
50,658	+		EX31_RS15485	0.45	+0.7
50,658	+		EX31_RS15485	0.45	+0.2
50,659	-		EX31_RS15485	0.45	-0.6
50,727	+		EX31_RS15485	0.56	+1.4
50,728	-		EX31_RS15485	0.56	-0.7
50,806	+		EX31_RS15485	0.68	+0.4
50,807	-		EX31_RS15485	0.68	-0.5
50,807	-		EX31_RS15485	0.68	+1.0
50,807	-		EX31_RS15485	0.68	+0.7
50,807	-		EX31_RS15485	0.68	+0.4