Strain Fitness in Rahnella sp. WP5 around EX31_RS13745

Experiment: NL-CCM; high oxygen

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX31_RS13735 and EX31_RS13740 are separated by 173 nucleotidesEX31_RS13740 and EX31_RS13745 are separated by 92 nucleotidesEX31_RS13745 and EX31_RS13750 are separated by 103 nucleotides EX31_RS13735: EX31_RS13735 - 4-hydroxy-tetrahydrodipicolinate synthase, at 7,080 to 7,946 _RS13735 EX31_RS13740: EX31_RS13740 - glutathione transferase GstA, at 8,120 to 8,725 _RS13740 EX31_RS13745: EX31_RS13745 - pyridoxal kinase PdxY, at 8,818 to 9,678 _RS13745 EX31_RS13750: EX31_RS13750 - tyrosine--tRNA ligase, at 9,782 to 11,056 _RS13750 Position (kb) 8 9 10Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 7.880 kb on + strandat 7.881 kb on - strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.952 kb on + strandat 7.953 kb on - strandat 7.996 kb on - strandat 8.025 kb on + strandat 8.030 kb on + strandat 8.030 kb on + strandat 8.031 kb on - strandat 8.031 kb on - strandat 8.043 kb on + strandat 8.045 kb on + strandat 8.045 kb on + strandat 8.046 kb on - strandat 8.048 kb on - strandat 8.048 kb on - strandat 8.129 kb on + strandat 8.129 kb on + strandat 8.129 kb on + strandat 8.130 kb on - strandat 8.130 kb on - strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.132 kb on + strandat 8.164 kb on + strandat 8.164 kb on + strandat 8.164 kb on + strandat 8.417 kb on + strand, within EX31_RS13740at 8.418 kb on - strand, within EX31_RS13740at 8.418 kb on - strand, within EX31_RS13740at 8.588 kb on + strand, within EX31_RS13740at 8.589 kb on - strand, within EX31_RS13740at 8.589 kb on - strand, within EX31_RS13740at 8.660 kb on + strand, within EX31_RS13740at 8.724 kb on - strandat 8.768 kb on + strandat 8.927 kb on + strand, within EX31_RS13745at 8.927 kb on + strand, within EX31_RS13745at 8.927 kb on + strand, within EX31_RS13745at 8.928 kb on - strand, within EX31_RS13745at 9.315 kb on + strand, within EX31_RS13745at 9.434 kb on + strand, within EX31_RS13745at 9.570 kb on + strand, within EX31_RS13745at 9.571 kb on - strand, within EX31_RS13745at 9.571 kb on - strand, within EX31_RS13745at 9.571 kb on - strand, within EX31_RS13745at 9.727 kb on + strandat 9.776 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
remove
7,880 + +0.0
7,881 - -1.1
7,952 + -1.5
7,952 + -0.3
7,952 + -0.6
7,953 - +1.1
7,996 - -0.5
8,025 + +0.8
8,030 + +1.0
8,030 + +0.3
8,031 - -0.7
8,031 - +0.1
8,043 + -0.2
8,045 + +0.2
8,045 + +0.8
8,046 - -0.8
8,048 - -0.8
8,048 - +0.1
8,129 + -0.4
8,129 + +0.9
8,129 + -0.1
8,130 - +0.0
8,130 - -0.4
8,132 + -0.3
8,132 + +0.2
8,132 + -0.6
8,132 + +0.0
8,132 + -0.0
8,164 + -0.1
8,164 + +0.4
8,164 + +0.3
8,417 + EX31_RS13740 0.49 -0.5
8,418 - EX31_RS13740 0.49 -0.8
8,418 - EX31_RS13740 0.49 -0.6
8,588 + EX31_RS13740 0.77 +0.2
8,589 - EX31_RS13740 0.77 +0.7
8,589 - EX31_RS13740 0.77 +0.0
8,660 + EX31_RS13740 0.89 -0.3
8,724 - +0.0
8,768 + +1.9
8,927 + EX31_RS13745 0.13 -0.5
8,927 + EX31_RS13745 0.13 -3.2
8,927 + EX31_RS13745 0.13 -2.3
8,928 - EX31_RS13745 0.13 -0.9
9,315 + EX31_RS13745 0.58 +1.3
9,434 + EX31_RS13745 0.72 -1.8
9,570 + EX31_RS13745 0.87 -0.2
9,571 - EX31_RS13745 0.87 -1.8
9,571 - EX31_RS13745 0.87 -0.6
9,571 - EX31_RS13745 0.87 -0.5
9,727 + +0.5
9,776 + -1.0

Or see this region's nucleotide sequence