Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS12545 and EX31_RS12550 are separated by 61 nucleotides EX31_RS12550 and EX31_RS12555 are separated by 459 nucleotides
EX31_RS12545: EX31_RS12545 - penicillin-binding protein activator, at 179,308 to 181,344
_RS12545
EX31_RS12550: EX31_RS12550 - 16S rRNA (cytidine(1402)-2'-O)-methyltransferase, at 181,406 to 182,275
_RS12550
EX31_RS12555: EX31_RS12555 - M23 family metallopeptidase, at 182,735 to 183,544
_RS12555
Position (kb) 181
182
183 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 180.505 kb on - strand, within EX31_RS12545 at 180.505 kb on - strand, within EX31_RS12545 at 180.505 kb on - strand, within EX31_RS12545 at 180.505 kb on - strand, within EX31_RS12545 at 180.606 kb on + strand, within EX31_RS12545 at 180.606 kb on + strand, within EX31_RS12545 at 180.724 kb on + strand, within EX31_RS12545 at 180.724 kb on + strand, within EX31_RS12545 at 180.724 kb on + strand, within EX31_RS12545 at 180.747 kb on + strand, within EX31_RS12545 at 180.747 kb on + strand, within EX31_RS12545 at 180.748 kb on - strand, within EX31_RS12545 at 180.748 kb on - strand, within EX31_RS12545 at 180.748 kb on - strand, within EX31_RS12545 at 180.850 kb on + strand, within EX31_RS12545 at 180.850 kb on + strand, within EX31_RS12545 at 180.851 kb on - strand, within EX31_RS12545 at 180.851 kb on - strand, within EX31_RS12545 at 180.872 kb on + strand, within EX31_RS12545 at 180.872 kb on + strand, within EX31_RS12545 at 180.872 kb on + strand, within EX31_RS12545 at 180.873 kb on - strand, within EX31_RS12545 at 180.873 kb on - strand, within EX31_RS12545 at 180.873 kb on - strand, within EX31_RS12545 at 180.873 kb on - strand, within EX31_RS12545 at 180.929 kb on + strand, within EX31_RS12545 at 180.930 kb on - strand, within EX31_RS12545 at 180.930 kb on - strand, within EX31_RS12545 at 180.933 kb on - strand, within EX31_RS12545 at 181.084 kb on - strand, within EX31_RS12545 at 181.165 kb on - strand at 181.165 kb on - strand at 181.196 kb on + strand at 181.196 kb on + strand at 181.196 kb on + strand at 181.196 kb on + strand at 181.197 kb on - strand at 181.197 kb on - strand at 181.199 kb on + strand at 181.199 kb on + strand at 181.200 kb on - strand at 181.367 kb on + strand at 181.367 kb on + strand at 181.379 kb on + strand at 181.382 kb on + strand at 181.382 kb on + strand at 181.429 kb on + strand at 181.430 kb on - strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.448 kb on + strand at 181.449 kb on - strand at 181.449 kb on - strand at 181.449 kb on - strand at 181.449 kb on - strand at 181.451 kb on - strand at 181.476 kb on + strand at 181.476 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.483 kb on + strand at 181.484 kb on - strand at 181.484 kb on - strand at 181.484 kb on - strand at 181.484 kb on - strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.485 kb on + strand at 181.486 kb on - strand at 181.486 kb on - strand at 181.486 kb on - strand at 181.486 kb on - strand at 181.486 kb on - strand at 181.486 kb on - strand at 181.486 kb on - strand at 181.518 kb on + strand, within EX31_RS12550 at 181.518 kb on + strand, within EX31_RS12550 at 181.519 kb on - strand, within EX31_RS12550 at 181.540 kb on + strand, within EX31_RS12550 at 181.592 kb on + strand, within EX31_RS12550 at 181.609 kb on + strand, within EX31_RS12550 at 181.609 kb on + strand, within EX31_RS12550 at 181.610 kb on - strand, within EX31_RS12550 at 181.636 kb on - strand, within EX31_RS12550 at 181.827 kb on - strand, within EX31_RS12550 at 181.867 kb on + strand, within EX31_RS12550 at 181.867 kb on + strand, within EX31_RS12550 at 181.867 kb on + strand, within EX31_RS12550 at 181.867 kb on + strand, within EX31_RS12550 at 181.867 kb on + strand, within EX31_RS12550 at 181.867 kb on + strand, within EX31_RS12550 at 181.868 kb on - strand, within EX31_RS12550 at 181.868 kb on - strand, within EX31_RS12550 at 181.948 kb on + strand, within EX31_RS12550 at 181.948 kb on + strand, within EX31_RS12550 at 181.976 kb on + strand, within EX31_RS12550 at 181.976 kb on + strand, within EX31_RS12550 at 181.976 kb on + strand, within EX31_RS12550 at 181.977 kb on - strand, within EX31_RS12550 at 181.977 kb on - strand, within EX31_RS12550 at 181.983 kb on + strand, within EX31_RS12550 at 181.983 kb on + strand, within EX31_RS12550 at 181.983 kb on + strand, within EX31_RS12550 at 181.983 kb on + strand, within EX31_RS12550 at 182.017 kb on + strand, within EX31_RS12550 at 182.110 kb on + strand, within EX31_RS12550 at 182.237 kb on + strand at 182.237 kb on + strand at 182.237 kb on + strand at 182.238 kb on - strand at 182.239 kb on + strand at 182.239 kb on + strand at 182.240 kb on - strand at 182.240 kb on - strand at 182.680 kb on + strand at 182.680 kb on + strand at 182.680 kb on + strand at 182.683 kb on - strand at 182.684 kb on + strand at 182.684 kb on + strand at 182.684 kb on + strand at 182.684 kb on + strand at 182.685 kb on - strand at 182.702 kb on + strand at 182.703 kb on - strand at 182.703 kb on - strand at 182.750 kb on + strand at 182.757 kb on + strand at 182.782 kb on + strand at 182.782 kb on + strand at 182.782 kb on + strand at 182.782 kb on + strand at 182.782 kb on + strand at 182.782 kb on + strand at 182.783 kb on - strand at 182.783 kb on - strand at 182.783 kb on - strand at 182.783 kb on - strand at 182.783 kb on - strand at 182.784 kb on + strand at 182.784 kb on + strand at 182.785 kb on - strand at 182.785 kb on - strand at 182.785 kb on - strand at 182.817 kb on + strand, within EX31_RS12555 at 182.823 kb on - strand, within EX31_RS12555 at 182.823 kb on - strand, within EX31_RS12555 at 182.836 kb on - strand, within EX31_RS12555 at 182.836 kb on - strand, within EX31_RS12555 at 182.932 kb on - strand, within EX31_RS12555 at 182.932 kb on - strand, within EX31_RS12555 at 182.932 kb on - strand, within EX31_RS12555 at 183.106 kb on - strand, within EX31_RS12555 at 183.134 kb on + strand, within EX31_RS12555 at 183.135 kb on - strand, within EX31_RS12555 at 183.135 kb on - strand, within EX31_RS12555 at 183.135 kb on - strand, within EX31_RS12555 at 183.137 kb on + strand, within EX31_RS12555 at 183.137 kb on + strand, within EX31_RS12555 at 183.137 kb on + strand, within EX31_RS12555 at 183.138 kb on - strand, within EX31_RS12555 at 183.138 kb on - strand, within EX31_RS12555 at 183.138 kb on - strand, within EX31_RS12555 at 183.138 kb on - strand, within EX31_RS12555 at 183.144 kb on + strand, within EX31_RS12555 at 183.144 kb on + strand, within EX31_RS12555 at 183.144 kb on + strand, within EX31_RS12555 at 183.144 kb on + strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.145 kb on - strand, within EX31_RS12555 at 183.165 kb on + strand, within EX31_RS12555 at 183.165 kb on + strand, within EX31_RS12555 at 183.166 kb on - strand, within EX31_RS12555 at 183.166 kb on - strand, within EX31_RS12555 at 183.166 kb on - strand, within EX31_RS12555 at 183.166 kb on - strand, within EX31_RS12555 at 183.167 kb on - strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.169 kb on + strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.170 kb on - strand, within EX31_RS12555 at 183.211 kb on + strand, within EX31_RS12555 at 183.212 kb on - strand, within EX31_RS12555
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 180,505 - EX31_RS12545 0.59 -0.3 180,505 - EX31_RS12545 0.59 -1.1 180,505 - EX31_RS12545 0.59 -0.1 180,505 - EX31_RS12545 0.59 +0.3 180,606 + EX31_RS12545 0.64 +0.2 180,606 + EX31_RS12545 0.64 +0.3 180,724 + EX31_RS12545 0.70 +0.1 180,724 + EX31_RS12545 0.70 -0.9 180,724 + EX31_RS12545 0.70 +0.4 180,747 + EX31_RS12545 0.71 -1.3 180,747 + EX31_RS12545 0.71 +0.2 180,748 - EX31_RS12545 0.71 -0.1 180,748 - EX31_RS12545 0.71 +0.6 180,748 - EX31_RS12545 0.71 +0.6 180,850 + EX31_RS12545 0.76 -0.8 180,850 + EX31_RS12545 0.76 +0.0 180,851 - EX31_RS12545 0.76 -0.3 180,851 - EX31_RS12545 0.76 -0.2 180,872 + EX31_RS12545 0.77 +0.0 180,872 + EX31_RS12545 0.77 -0.1 180,872 + EX31_RS12545 0.77 -2.3 180,873 - EX31_RS12545 0.77 -0.5 180,873 - EX31_RS12545 0.77 +0.0 180,873 - EX31_RS12545 0.77 +0.8 180,873 - EX31_RS12545 0.77 +0.4 180,929 + EX31_RS12545 0.80 -0.6 180,930 - EX31_RS12545 0.80 +0.3 180,930 - EX31_RS12545 0.80 +0.7 180,933 - EX31_RS12545 0.80 +0.3 181,084 - EX31_RS12545 0.87 +0.1 181,165 - -0.2 181,165 - +0.2 181,196 + +0.3 181,196 + -0.9 181,196 + +0.5 181,196 + -1.0 181,197 - +1.2 181,197 - +0.2 181,199 + -0.5 181,199 + +0.4 181,200 - -0.1 181,367 + -0.9 181,367 + -0.8 181,379 + -0.3 181,382 + +0.2 181,382 + +0.1 181,429 + -0.0 181,430 - -0.9 181,448 + -1.2 181,448 + -2.0 181,448 + -1.7 181,448 + -1.7 181,448 + -0.8 181,448 + -0.7 181,448 + -0.6 181,448 + -0.7 181,449 - -2.4 181,449 - -1.4 181,449 - -1.0 181,449 - -1.5 181,451 - -3.0 181,476 + -1.0 181,476 + -0.2 181,483 + -0.6 181,483 + -1.5 181,483 + -0.9 181,483 + -0.7 181,483 + -0.9 181,483 + -1.7 181,483 + -1.1 181,483 + -0.9 181,483 + -1.5 181,483 + -0.5 181,483 + +0.3 181,484 - -1.4 181,484 - -0.9 181,484 - -1.4 181,484 - -1.3 181,485 + -1.4 181,485 + -0.9 181,485 + -1.5 181,485 + +0.8 181,485 + -0.9 181,485 + -0.7 181,485 + -1.4 181,485 + +0.6 181,485 + -0.7 181,485 + -1.2 181,485 + -0.7 181,485 + -0.4 181,486 - -0.9 181,486 - -1.4 181,486 - -1.5 181,486 - -0.1 181,486 - -1.1 181,486 - -1.2 181,486 - -2.2 181,518 + EX31_RS12550 0.13 -0.9 181,518 + EX31_RS12550 0.13 -1.7 181,519 - EX31_RS12550 0.13 -3.1 181,540 + EX31_RS12550 0.15 -1.5 181,592 + EX31_RS12550 0.21 -1.2 181,609 + EX31_RS12550 0.23 -0.4 181,609 + EX31_RS12550 0.23 -0.8 181,610 - EX31_RS12550 0.23 -1.3 181,636 - EX31_RS12550 0.26 -0.2 181,827 - EX31_RS12550 0.48 -0.2 181,867 + EX31_RS12550 0.53 -1.6 181,867 + EX31_RS12550 0.53 -1.6 181,867 + EX31_RS12550 0.53 -1.0 181,867 + EX31_RS12550 0.53 -1.5 181,867 + EX31_RS12550 0.53 -0.6 181,867 + EX31_RS12550 0.53 -0.2 181,868 - EX31_RS12550 0.53 -2.9 181,868 - EX31_RS12550 0.53 -0.8 181,948 + EX31_RS12550 0.62 -0.3 181,948 + EX31_RS12550 0.62 -1.2 181,976 + EX31_RS12550 0.66 -0.8 181,976 + EX31_RS12550 0.66 +0.2 181,976 + EX31_RS12550 0.66 -0.9 181,977 - EX31_RS12550 0.66 -0.1 181,977 - EX31_RS12550 0.66 -0.7 181,983 + EX31_RS12550 0.66 -0.3 181,983 + EX31_RS12550 0.66 -1.4 181,983 + EX31_RS12550 0.66 -1.1 181,983 + EX31_RS12550 0.66 +0.0 182,017 + EX31_RS12550 0.70 -1.2 182,110 + EX31_RS12550 0.81 -1.2 182,237 + -1.0 182,237 + -2.6 182,237 + -1.1 182,238 - -0.3 182,239 + +0.1 182,239 + -0.7 182,240 - -1.0 182,240 - -0.0 182,680 + +0.6 182,680 + +0.4 182,680 + -0.5 182,683 - -0.5 182,684 + +0.7 182,684 + +0.3 182,684 + +0.2 182,684 + -0.1 182,685 - -0.7 182,702 + +0.3 182,703 - -0.4 182,703 - +0.8 182,750 + +0.0 182,757 + -1.1 182,782 + +0.8 182,782 + -1.1 182,782 + +0.2 182,782 + +0.9 182,782 + +0.5 182,782 + -0.5 182,783 - +0.1 182,783 - -0.5 182,783 - -0.2 182,783 - +0.6 182,783 - +2.1 182,784 + +0.3 182,784 + +0.1 182,785 - +0.4 182,785 - -1.7 182,785 - -0.3 182,817 + EX31_RS12555 0.10 -1.1 182,823 - EX31_RS12555 0.11 +0.5 182,823 - EX31_RS12555 0.11 -0.2 182,836 - EX31_RS12555 0.12 -0.3 182,836 - EX31_RS12555 0.12 +0.1 182,932 - EX31_RS12555 0.24 +1.2 182,932 - EX31_RS12555 0.24 +0.7 182,932 - EX31_RS12555 0.24 -0.3 183,106 - EX31_RS12555 0.46 +0.2 183,134 + EX31_RS12555 0.49 -0.4 183,135 - EX31_RS12555 0.49 +1.6 183,135 - EX31_RS12555 0.49 -0.4 183,135 - EX31_RS12555 0.49 -0.1 183,137 + EX31_RS12555 0.50 -0.7 183,137 + EX31_RS12555 0.50 +0.7 183,137 + EX31_RS12555 0.50 -0.5 183,138 - EX31_RS12555 0.50 -0.3 183,138 - EX31_RS12555 0.50 +0.1 183,138 - EX31_RS12555 0.50 +0.1 183,138 - EX31_RS12555 0.50 +0.8 183,144 + EX31_RS12555 0.50 +0.0 183,144 + EX31_RS12555 0.50 -0.5 183,144 + EX31_RS12555 0.50 +0.2 183,144 + EX31_RS12555 0.50 +0.8 183,145 - EX31_RS12555 0.51 -0.3 183,145 - EX31_RS12555 0.51 -0.2 183,145 - EX31_RS12555 0.51 -0.5 183,145 - EX31_RS12555 0.51 +0.2 183,145 - EX31_RS12555 0.51 -0.1 183,145 - EX31_RS12555 0.51 -0.3 183,145 - EX31_RS12555 0.51 -0.1 183,165 + EX31_RS12555 0.53 +0.0 183,165 + EX31_RS12555 0.53 -0.1 183,166 - EX31_RS12555 0.53 +0.0 183,166 - EX31_RS12555 0.53 -0.2 183,166 - EX31_RS12555 0.53 -0.0 183,166 - EX31_RS12555 0.53 +0.2 183,167 - EX31_RS12555 0.53 -0.5 183,169 + EX31_RS12555 0.54 -1.3 183,169 + EX31_RS12555 0.54 -1.8 183,169 + EX31_RS12555 0.54 +0.5 183,169 + EX31_RS12555 0.54 +0.0 183,169 + EX31_RS12555 0.54 -0.3 183,169 + EX31_RS12555 0.54 -0.1 183,169 + EX31_RS12555 0.54 -0.3 183,169 + EX31_RS12555 0.54 +0.4 183,169 + EX31_RS12555 0.54 +0.2 183,169 + EX31_RS12555 0.54 +0.5 183,169 + EX31_RS12555 0.54 +0.4 183,169 + EX31_RS12555 0.54 -0.2 183,169 + EX31_RS12555 0.54 +0.1 183,169 + EX31_RS12555 0.54 +0.8 183,169 + EX31_RS12555 0.54 +1.1 183,169 + EX31_RS12555 0.54 -0.0 183,169 + EX31_RS12555 0.54 -0.2 183,169 + EX31_RS12555 0.54 -0.1 183,169 + EX31_RS12555 0.54 -0.4 183,170 - EX31_RS12555 0.54 +0.7 183,170 - EX31_RS12555 0.54 +0.6 183,170 - EX31_RS12555 0.54 +0.2 183,170 - EX31_RS12555 0.54 +0.7 183,170 - EX31_RS12555 0.54 +1.0 183,170 - EX31_RS12555 0.54 -0.9 183,170 - EX31_RS12555 0.54 +0.2 183,170 - EX31_RS12555 0.54 +1.2 183,170 - EX31_RS12555 0.54 +0.6 183,170 - EX31_RS12555 0.54 +0.5 183,170 - EX31_RS12555 0.54 +0.8 183,170 - EX31_RS12555 0.54 +0.0 183,170 - EX31_RS12555 0.54 -0.1 183,170 - EX31_RS12555 0.54 +0.3 183,170 - EX31_RS12555 0.54 -0.1 183,211 + EX31_RS12555 0.59 -0.2 183,212 - EX31_RS12555 0.59 -0.2
Or see this region's nucleotide sequence