Strain Fitness in Rahnella sp. WP5 around EX31_RS11650

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS11645 and EX31_RS11650 are separated by 304 nucleotidesEX31_RS11650 and EX31_RS11655 are separated by 118 nucleotides EX31_RS11645: EX31_RS11645 - PTS beta-glucoside transporter subunit IIABC, at 270,001 to 271,875 _RS11645 EX31_RS11650: EX31_RS11650 - glucose 1-dehydrogenase, at 272,180 to 272,952 _RS11650 EX31_RS11655: EX31_RS11655 - LysR family transcriptional regulator, at 273,071 to 273,970 _RS11655 Position (kb) 272 273Strain fitness (log2 ratio) -2 -1 0 1at 271.239 kb on + strand, within EX31_RS11645at 271.239 kb on + strand, within EX31_RS11645at 271.239 kb on + strand, within EX31_RS11645at 271.239 kb on + strand, within EX31_RS11645at 271.239 kb on + strand, within EX31_RS11645at 271.240 kb on - strand, within EX31_RS11645at 271.240 kb on - strand, within EX31_RS11645at 271.240 kb on - strand, within EX31_RS11645at 271.241 kb on + strand, within EX31_RS11645at 271.241 kb on + strand, within EX31_RS11645at 271.242 kb on - strand, within EX31_RS11645at 271.242 kb on - strand, within EX31_RS11645at 271.242 kb on - strand, within EX31_RS11645at 271.242 kb on - strand, within EX31_RS11645at 271.268 kb on - strand, within EX31_RS11645at 271.300 kb on + strand, within EX31_RS11645at 271.300 kb on + strand, within EX31_RS11645at 271.301 kb on - strand, within EX31_RS11645at 271.301 kb on - strand, within EX31_RS11645at 271.392 kb on + strand, within EX31_RS11645at 271.393 kb on - strand, within EX31_RS11645at 271.418 kb on + strand, within EX31_RS11645at 271.452 kb on + strand, within EX31_RS11645at 271.453 kb on - strand, within EX31_RS11645at 271.454 kb on + strand, within EX31_RS11645at 271.454 kb on + strand, within EX31_RS11645at 271.454 kb on + strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.455 kb on - strand, within EX31_RS11645at 271.555 kb on + strand, within EX31_RS11645at 271.556 kb on - strand, within EX31_RS11645at 271.659 kb on - strand, within EX31_RS11645at 271.774 kb on + strandat 271.859 kb on - strandat 271.868 kb on + strandat 271.875 kb on + strandat 271.894 kb on + strandat 271.894 kb on + strandat 271.895 kb on - strandat 271.895 kb on - strandat 271.993 kb on - strandat 272.014 kb on - strandat 272.092 kb on - strandat 272.379 kb on + strand, within EX31_RS11650at 272.434 kb on + strand, within EX31_RS11650at 272.437 kb on - strand, within EX31_RS11650at 272.477 kb on + strand, within EX31_RS11650at 272.477 kb on + strand, within EX31_RS11650at 272.478 kb on - strand, within EX31_RS11650at 272.524 kb on - strand, within EX31_RS11650at 272.524 kb on - strand, within EX31_RS11650at 272.524 kb on - strand, within EX31_RS11650at 272.724 kb on + strand, within EX31_RS11650at 272.724 kb on + strand, within EX31_RS11650at 272.724 kb on + strand, within EX31_RS11650at 272.725 kb on - strand, within EX31_RS11650at 272.725 kb on - strand, within EX31_RS11650at 272.932 kb on + strandat 272.932 kb on + strandat 272.952 kb on + strandat 272.953 kb on - strandat 272.953 kb on - strandat 272.953 kb on - strandat 272.993 kb on + strandat 272.994 kb on - strandat 272.995 kb on + strandat 272.995 kb on + strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 272.996 kb on - strandat 273.027 kb on + strandat 273.027 kb on + strandat 273.028 kb on - strandat 273.028 kb on - strandat 273.028 kb on - strandat 273.029 kb on + strandat 273.029 kb on + strandat 273.051 kb on + strandat 273.062 kb on - strandat 273.186 kb on + strand, within EX31_RS11655at 273.186 kb on + strand, within EX31_RS11655at 273.186 kb on + strand, within EX31_RS11655at 273.186 kb on + strand, within EX31_RS11655at 273.187 kb on - strand, within EX31_RS11655at 273.187 kb on - strand, within EX31_RS11655at 273.187 kb on - strand, within EX31_RS11655at 273.187 kb on - strand, within EX31_RS11655at 273.244 kb on - strand, within EX31_RS11655at 273.361 kb on + strand, within EX31_RS11655at 273.364 kb on + strand, within EX31_RS11655at 273.364 kb on + strand, within EX31_RS11655at 273.365 kb on - strand, within EX31_RS11655at 273.367 kb on + strand, within EX31_RS11655at 273.368 kb on - strand, within EX31_RS11655at 273.575 kb on + strand, within EX31_RS11655at 273.797 kb on + strand, within EX31_RS11655at 273.798 kb on - strand, within EX31_RS11655at 273.798 kb on - strand, within EX31_RS11655at 273.798 kb on - strand, within EX31_RS11655at 273.841 kb on + strand, within EX31_RS11655at 273.842 kb on - strand, within EX31_RS11655at 273.842 kb on - strand, within EX31_RS11655at 273.896 kb on + strandat 273.897 kb on - strandat 273.930 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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271,239 + EX31_RS11645 0.66 +1.0
271,239 + EX31_RS11645 0.66 -1.0
271,239 + EX31_RS11645 0.66 -1.2
271,239 + EX31_RS11645 0.66 +0.0
271,239 + EX31_RS11645 0.66 -1.4
271,240 - EX31_RS11645 0.66 -0.5
271,240 - EX31_RS11645 0.66 -1.0
271,240 - EX31_RS11645 0.66 -0.5
271,241 + EX31_RS11645 0.66 -0.2
271,241 + EX31_RS11645 0.66 -1.4
271,242 - EX31_RS11645 0.66 -0.8
271,242 - EX31_RS11645 0.66 +0.5
271,242 - EX31_RS11645 0.66 +0.1
271,242 - EX31_RS11645 0.66 +0.1
271,268 - EX31_RS11645 0.68 +0.2
271,300 + EX31_RS11645 0.69 -0.0
271,300 + EX31_RS11645 0.69 +0.5
271,301 - EX31_RS11645 0.69 -0.8
271,301 - EX31_RS11645 0.69 -0.9
271,392 + EX31_RS11645 0.74 -0.3
271,393 - EX31_RS11645 0.74 -0.7
271,418 + EX31_RS11645 0.76 +0.3
271,452 + EX31_RS11645 0.77 -0.7
271,453 - EX31_RS11645 0.77 +1.1
271,454 + EX31_RS11645 0.77 +0.2
271,454 + EX31_RS11645 0.77 +1.6
271,454 + EX31_RS11645 0.77 +0.5
271,455 - EX31_RS11645 0.78 +0.6
271,455 - EX31_RS11645 0.78 -0.2
271,455 - EX31_RS11645 0.78 -0.1
271,455 - EX31_RS11645 0.78 -0.9
271,455 - EX31_RS11645 0.78 -0.7
271,455 - EX31_RS11645 0.78 +0.0
271,455 - EX31_RS11645 0.78 +0.1
271,555 + EX31_RS11645 0.83 -1.3
271,556 - EX31_RS11645 0.83 +0.1
271,659 - EX31_RS11645 0.88 -1.5
271,774 + -0.1
271,859 - +0.0
271,868 + -1.4
271,875 + -0.2
271,894 + +0.3
271,894 + +0.6
271,895 - -0.1
271,895 - -0.1
271,993 - -0.7
272,014 - +0.7
272,092 - +1.2
272,379 + EX31_RS11650 0.26 +0.1
272,434 + EX31_RS11650 0.33 -0.8
272,437 - EX31_RS11650 0.33 -1.3
272,477 + EX31_RS11650 0.38 +0.7
272,477 + EX31_RS11650 0.38 -0.9
272,478 - EX31_RS11650 0.39 -0.4
272,524 - EX31_RS11650 0.45 -0.2
272,524 - EX31_RS11650 0.45 -1.3
272,524 - EX31_RS11650 0.45 +0.0
272,724 + EX31_RS11650 0.70 -1.3
272,724 + EX31_RS11650 0.70 -0.7
272,724 + EX31_RS11650 0.70 -1.1
272,725 - EX31_RS11650 0.71 -0.1
272,725 - EX31_RS11650 0.71 -0.3
272,932 + +0.7
272,932 + -0.4
272,952 + -2.4
272,953 - +0.7
272,953 - +0.0
272,953 - +0.5
272,993 + -0.5
272,994 - +0.2
272,995 + +0.2
272,995 + +1.0
272,996 - -0.2
272,996 - +0.6
272,996 - -0.0
272,996 - -0.5
272,996 - -0.4
272,996 - +0.5
272,996 - -0.1
272,996 - -0.3
272,996 - +1.1
272,996 - +0.3
273,027 + -1.0
273,027 + -0.4
273,028 - +0.2
273,028 - +0.0
273,028 - +0.1
273,029 + +0.9
273,029 + -0.5
273,051 + +0.0
273,062 - -1.4
273,186 + EX31_RS11655 0.13 +0.3
273,186 + EX31_RS11655 0.13 +1.0
273,186 + EX31_RS11655 0.13 +0.1
273,186 + EX31_RS11655 0.13 -1.4
273,187 - EX31_RS11655 0.13 +1.1
273,187 - EX31_RS11655 0.13 -0.4
273,187 - EX31_RS11655 0.13 +1.5
273,187 - EX31_RS11655 0.13 +1.0
273,244 - EX31_RS11655 0.19 +0.6
273,361 + EX31_RS11655 0.32 +1.1
273,364 + EX31_RS11655 0.33 +0.9
273,364 + EX31_RS11655 0.33 -0.4
273,365 - EX31_RS11655 0.33 -0.1
273,367 + EX31_RS11655 0.33 -0.4
273,368 - EX31_RS11655 0.33 +0.0
273,575 + EX31_RS11655 0.56 -1.1
273,797 + EX31_RS11655 0.81 +0.7
273,798 - EX31_RS11655 0.81 +0.8
273,798 - EX31_RS11655 0.81 -0.1
273,798 - EX31_RS11655 0.81 -2.1
273,841 + EX31_RS11655 0.86 +0.2
273,842 - EX31_RS11655 0.86 -0.2
273,842 - EX31_RS11655 0.86 -0.1
273,896 + -0.4
273,897 - +0.1
273,930 + +0.8

Or see this region's nucleotide sequence