Experiment: NL-CCM; high oxygen
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX31_RS11005 and EX31_RS11010 are separated by 247 nucleotides EX31_RS11010 and EX31_RS11015 are separated by 143 nucleotides EX31_RS11015 and EX31_RS11020 are separated by 331 nucleotides
EX31_RS11005: EX31_RS11005 - EAL domain-containing protein, at 129,846 to 131,369
_RS11005
EX31_RS11010: EX31_RS11010 - DgsA anti-repressor MtfA, at 131,617 to 132,393
_RS11010
EX31_RS11015: EX31_RS11015 - tRNA-Asn, at 132,537 to 132,612
_RS11015
EX31_RS11020: EX31_RS11020 - SDR family oxidoreductase, at 132,944 to 133,684
_RS11020
Position (kb) 131
132
133 Strain fitness (log2 ratio) -2
-1
0
1
2 at 130.669 kb on - strand, within EX31_RS11005 at 130.672 kb on + strand, within EX31_RS11005 at 130.673 kb on - strand, within EX31_RS11005 at 130.834 kb on + strand, within EX31_RS11005 at 130.835 kb on - strand, within EX31_RS11005 at 131.009 kb on - strand, within EX31_RS11005 at 131.162 kb on - strand, within EX31_RS11005 at 131.209 kb on + strand, within EX31_RS11005 at 131.209 kb on + strand, within EX31_RS11005 at 131.210 kb on - strand, within EX31_RS11005 at 131.276 kb on - strand at 131.280 kb on + strand at 131.316 kb on + strand at 131.395 kb on + strand at 131.434 kb on + strand at 131.443 kb on - strand at 131.460 kb on - strand at 131.461 kb on + strand at 131.461 kb on + strand at 131.461 kb on + strand at 131.462 kb on - strand at 131.462 kb on - strand at 131.501 kb on - strand at 131.529 kb on + strand at 131.535 kb on - strand at 131.622 kb on + strand at 131.622 kb on + strand at 131.622 kb on + strand at 131.623 kb on - strand at 131.623 kb on - strand at 131.894 kb on - strand, within EX31_RS11010 at 132.118 kb on - strand, within EX31_RS11010 at 132.317 kb on + strand at 132.640 kb on + strand at 132.640 kb on + strand at 132.660 kb on + strand at 132.660 kb on + strand at 132.661 kb on - strand at 132.682 kb on + strand at 132.682 kb on + strand at 132.839 kb on + strand at 132.847 kb on + strand at 132.862 kb on + strand at 132.885 kb on + strand at 132.886 kb on - strand at 132.921 kb on + strand at 132.922 kb on - strand at 132.994 kb on - strand at 133.048 kb on + strand, within EX31_RS11020 at 133.077 kb on - strand, within EX31_RS11020 at 133.206 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.240 kb on - strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.241 kb on + strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.242 kb on - strand, within EX31_RS11020 at 133.266 kb on + strand, within EX31_RS11020 at 133.342 kb on + strand, within EX31_RS11020 at 133.343 kb on - strand, within EX31_RS11020 at 133.343 kb on - strand, within EX31_RS11020 at 133.343 kb on - strand, within EX31_RS11020
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM; high oxygen remove 130,669 - EX31_RS11005 0.54 +0.4 130,672 + EX31_RS11005 0.54 -0.1 130,673 - EX31_RS11005 0.54 -0.1 130,834 + EX31_RS11005 0.65 -0.1 130,835 - EX31_RS11005 0.65 +0.7 131,009 - EX31_RS11005 0.76 -1.1 131,162 - EX31_RS11005 0.86 -0.4 131,209 + EX31_RS11005 0.89 -0.7 131,209 + EX31_RS11005 0.89 -0.2 131,210 - EX31_RS11005 0.90 -0.0 131,276 - -0.0 131,280 + +0.9 131,316 + -0.8 131,395 + -0.3 131,434 + +1.5 131,443 - +1.3 131,460 - -0.1 131,461 + +0.2 131,461 + -0.2 131,461 + +0.1 131,462 - +0.9 131,462 - +0.5 131,501 - +0.4 131,529 + +0.1 131,535 - -2.2 131,622 + +1.1 131,622 + +0.0 131,622 + -0.5 131,623 - -0.4 131,623 - +0.3 131,894 - EX31_RS11010 0.36 -1.8 132,118 - EX31_RS11010 0.64 -0.3 132,317 + +1.0 132,640 + +0.6 132,640 + +0.5 132,660 + -0.1 132,660 + +1.0 132,661 - +0.1 132,682 + -1.1 132,682 + -0.2 132,839 + -1.3 132,847 + -2.7 132,862 + +0.0 132,885 + +1.0 132,886 - +1.2 132,921 + -0.6 132,922 - -0.1 132,994 - +0.2 133,048 + EX31_RS11020 0.14 +1.1 133,077 - EX31_RS11020 0.18 -0.2 133,206 - EX31_RS11020 0.35 -0.6 133,240 - EX31_RS11020 0.40 -0.1 133,240 - EX31_RS11020 0.40 +0.1 133,240 - EX31_RS11020 0.40 +0.6 133,240 - EX31_RS11020 0.40 -0.5 133,240 - EX31_RS11020 0.40 -1.3 133,241 + EX31_RS11020 0.40 -0.4 133,241 + EX31_RS11020 0.40 +1.9 133,241 + EX31_RS11020 0.40 -1.2 133,241 + EX31_RS11020 0.40 +1.0 133,241 + EX31_RS11020 0.40 +1.6 133,242 - EX31_RS11020 0.40 -1.2 133,242 - EX31_RS11020 0.40 +0.9 133,242 - EX31_RS11020 0.40 -1.6 133,242 - EX31_RS11020 0.40 +0.1 133,266 + EX31_RS11020 0.43 +0.1 133,342 + EX31_RS11020 0.54 -0.2 133,343 - EX31_RS11020 0.54 -0.4 133,343 - EX31_RS11020 0.54 -0.8 133,343 - EX31_RS11020 0.54 +2.4
Or see this region's nucleotide sequence