Strain Fitness in Rahnella sp. WP5 around EX31_RS10090

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS10085 and EX31_RS10090 are separated by 201 nucleotidesEX31_RS10090 and EX31_RS10095 are separated by 9 nucleotides EX31_RS10085: EX31_RS10085 - DNA-binding transcriptional regulator H-NS, at 227,199 to 227,606 _RS10085 EX31_RS10090: EX31_RS10090 - NAD-dependent epimerase, at 227,808 to 228,815 _RS10090 EX31_RS10095: EX31_RS10095 - UDP-glucose/GDP-mannose dehydrogenase family protein, at 228,825 to 230,168 _RS10095 Position (kb) 227 228 229Strain fitness (log2 ratio) -2 -1 0 1 2 3at 226.816 kb on + strandat 226.916 kb on + strandat 226.916 kb on + strandat 226.916 kb on + strandat 226.917 kb on - strandat 226.917 kb on - strandat 226.917 kb on - strandat 226.917 kb on - strandat 226.917 kb on - strandat 226.921 kb on + strandat 226.922 kb on - strandat 226.922 kb on - strandat 227.024 kb on - strandat 227.038 kb on - strandat 227.062 kb on - strandat 227.062 kb on - strandat 227.551 kb on + strand, within EX31_RS10085at 227.604 kb on + strandat 227.635 kb on + strandat 227.664 kb on + strandat 227.670 kb on + strandat 227.745 kb on - strandat 228.002 kb on - strand, within EX31_RS10090at 228.039 kb on - strand, within EX31_RS10090at 228.039 kb on - strand, within EX31_RS10090at 228.039 kb on - strand, within EX31_RS10090at 228.048 kb on - strand, within EX31_RS10090at 228.048 kb on - strand, within EX31_RS10090at 228.271 kb on - strand, within EX31_RS10090at 228.306 kb on - strand, within EX31_RS10090at 228.465 kb on - strand, within EX31_RS10090at 228.642 kb on - strand, within EX31_RS10090at 228.707 kb on - strand, within EX31_RS10090at 228.773 kb on - strandat 229.106 kb on - strand, within EX31_RS10095

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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226,816 + +0.3
226,916 + +0.7
226,916 + -0.4
226,916 + -2.5
226,917 - +0.9
226,917 - +0.8
226,917 - +0.4
226,917 - +0.5
226,917 - +1.0
226,921 + -0.3
226,922 - +0.4
226,922 - -0.0
227,024 - +0.8
227,038 - +0.4
227,062 - -2.7
227,062 - -0.7
227,551 + EX31_RS10085 0.86 +2.8
227,604 + -1.4
227,635 + -0.9
227,664 + +0.1
227,670 + +0.9
227,745 - +0.1
228,002 - EX31_RS10090 0.19 +1.1
228,039 - EX31_RS10090 0.23 -1.0
228,039 - EX31_RS10090 0.23 +0.4
228,039 - EX31_RS10090 0.23 +0.5
228,048 - EX31_RS10090 0.24 -0.7
228,048 - EX31_RS10090 0.24 +0.1
228,271 - EX31_RS10090 0.46 -1.6
228,306 - EX31_RS10090 0.49 -0.4
228,465 - EX31_RS10090 0.65 +0.5
228,642 - EX31_RS10090 0.83 +0.2
228,707 - EX31_RS10090 0.89 -0.8
228,773 - -1.2
229,106 - EX31_RS10095 0.21 +0.0

Or see this region's nucleotide sequence