Strain Fitness in Rahnella sp. WP5 around EX31_RS09920

Experiment: NL-CCM; high oxygen

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX31_RS09910 and EX31_RS09915 are separated by 18 nucleotidesEX31_RS09915 and EX31_RS09920 are separated by 16 nucleotidesEX31_RS09920 and EX31_RS09925 are separated by 25 nucleotidesEX31_RS09925 and EX31_RS09930 are separated by 16 nucleotides EX31_RS09910: EX31_RS09910 - YciK family oxidoreductase, at 191,847 to 192,608 _RS09910 EX31_RS09915: EX31_RS09915 - cob(I)yrinic acid a,c-diamide adenosyltransferase, at 192,627 to 193,217 _RS09915 EX31_RS09920: EX31_RS09920 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 193,234 to 194,277 _RS09920 EX31_RS09925: EX31_RS09925 - alpha-ribazole phosphatase, at 194,303 to 194,899 _RS09925 EX31_RS09930: EX31_RS09930 - adenosylcobinamide-GDP ribazoletransferase, at 194,916 to 195,668 _RS09930 Position (kb) 193 194 195Strain fitness (log2 ratio) -2 -1 0 1at 192.369 kb on - strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.395 kb on + strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.396 kb on - strand, within EX31_RS09910at 192.485 kb on + strand, within EX31_RS09910at 192.485 kb on + strand, within EX31_RS09910at 192.506 kb on + strand, within EX31_RS09910at 192.507 kb on - strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.509 kb on + strand, within EX31_RS09910at 192.510 kb on - strand, within EX31_RS09910at 192.510 kb on - strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.519 kb on + strand, within EX31_RS09910at 192.525 kb on + strand, within EX31_RS09910at 192.525 kb on + strand, within EX31_RS09910at 192.606 kb on + strandat 192.607 kb on - strandat 192.644 kb on + strandat 192.715 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.724 kb on + strand, within EX31_RS09915at 192.821 kb on + strand, within EX31_RS09915at 192.917 kb on + strand, within EX31_RS09915at 192.917 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.988 kb on + strand, within EX31_RS09915at 192.989 kb on - strand, within EX31_RS09915at 192.989 kb on - strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.017 kb on + strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.018 kb on - strand, within EX31_RS09915at 193.019 kb on + strand, within EX31_RS09915at 193.019 kb on + strand, within EX31_RS09915at 193.019 kb on + strand, within EX31_RS09915at 193.020 kb on - strand, within EX31_RS09915at 193.191 kb on - strandat 193.236 kb on - strandat 193.358 kb on + strand, within EX31_RS09920at 193.414 kb on - strand, within EX31_RS09920at 193.414 kb on - strand, within EX31_RS09920at 193.425 kb on + strand, within EX31_RS09920at 193.430 kb on + strand, within EX31_RS09920at 193.431 kb on - strand, within EX31_RS09920at 193.431 kb on - strand, within EX31_RS09920at 193.612 kb on + strand, within EX31_RS09920at 193.644 kb on + strand, within EX31_RS09920at 193.740 kb on + strand, within EX31_RS09920at 193.740 kb on + strand, within EX31_RS09920at 193.872 kb on + strand, within EX31_RS09920at 193.873 kb on - strand, within EX31_RS09920at 194.309 kb on - strandat 194.321 kb on - strandat 194.381 kb on - strand, within EX31_RS09925at 194.381 kb on - strand, within EX31_RS09925at 194.462 kb on + strand, within EX31_RS09925at 194.536 kb on + strand, within EX31_RS09925at 194.738 kb on - strand, within EX31_RS09925at 194.926 kb on - strandat 195.051 kb on + strand, within EX31_RS09930at 195.069 kb on + strand, within EX31_RS09930at 195.108 kb on + strand, within EX31_RS09930at 195.109 kb on - strand, within EX31_RS09930at 195.109 kb on - strand, within EX31_RS09930at 195.116 kb on + strand, within EX31_RS09930at 195.116 kb on + strand, within EX31_RS09930at 195.140 kb on + strand, within EX31_RS09930at 195.190 kb on + strand, within EX31_RS09930at 195.190 kb on + strand, within EX31_RS09930at 195.190 kb on + strand, within EX31_RS09930at 195.191 kb on - strand, within EX31_RS09930at 195.237 kb on - strand, within EX31_RS09930

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM; high oxygen
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192,369 - EX31_RS09910 0.69 -1.8
192,395 + EX31_RS09910 0.72 -0.6
192,395 + EX31_RS09910 0.72 +0.6
192,395 + EX31_RS09910 0.72 -0.4
192,395 + EX31_RS09910 0.72 +0.6
192,395 + EX31_RS09910 0.72 +0.4
192,395 + EX31_RS09910 0.72 -0.3
192,395 + EX31_RS09910 0.72 -0.9
192,395 + EX31_RS09910 0.72 -0.0
192,395 + EX31_RS09910 0.72 +0.3
192,395 + EX31_RS09910 0.72 +0.3
192,395 + EX31_RS09910 0.72 +0.6
192,395 + EX31_RS09910 0.72 -0.4
192,395 + EX31_RS09910 0.72 +0.0
192,396 - EX31_RS09910 0.72 -0.0
192,396 - EX31_RS09910 0.72 +0.0
192,396 - EX31_RS09910 0.72 -0.1
192,396 - EX31_RS09910 0.72 -0.1
192,396 - EX31_RS09910 0.72 -0.2
192,396 - EX31_RS09910 0.72 +0.0
192,485 + EX31_RS09910 0.84 +1.3
192,485 + EX31_RS09910 0.84 -0.2
192,506 + EX31_RS09910 0.86 +0.1
192,507 - EX31_RS09910 0.87 -0.9
192,509 + EX31_RS09910 0.87 -0.4
192,509 + EX31_RS09910 0.87 +0.1
192,509 + EX31_RS09910 0.87 +0.0
192,509 + EX31_RS09910 0.87 -2.0
192,509 + EX31_RS09910 0.87 +0.6
192,509 + EX31_RS09910 0.87 +0.8
192,509 + EX31_RS09910 0.87 +0.4
192,510 - EX31_RS09910 0.87 -0.3
192,510 - EX31_RS09910 0.87 +0.0
192,519 + EX31_RS09910 0.88 +0.6
192,519 + EX31_RS09910 0.88 -0.3
192,519 + EX31_RS09910 0.88 +0.9
192,519 + EX31_RS09910 0.88 -0.7
192,519 + EX31_RS09910 0.88 -0.3
192,519 + EX31_RS09910 0.88 -0.5
192,525 + EX31_RS09910 0.89 +0.6
192,525 + EX31_RS09910 0.89 -0.7
192,606 + -0.7
192,607 - +1.7
192,644 + +1.0
192,715 + EX31_RS09915 0.15 +0.0
192,724 + EX31_RS09915 0.16 -1.0
192,724 + EX31_RS09915 0.16 +0.3
192,724 + EX31_RS09915 0.16 +0.1
192,724 + EX31_RS09915 0.16 +0.2
192,724 + EX31_RS09915 0.16 +0.2
192,724 + EX31_RS09915 0.16 +0.3
192,821 + EX31_RS09915 0.33 -1.6
192,917 + EX31_RS09915 0.49 -0.3
192,917 + EX31_RS09915 0.49 +0.8
192,988 + EX31_RS09915 0.61 +0.4
192,988 + EX31_RS09915 0.61 -0.3
192,988 + EX31_RS09915 0.61 +0.2
192,988 + EX31_RS09915 0.61 +0.1
192,988 + EX31_RS09915 0.61 +0.3
192,988 + EX31_RS09915 0.61 +0.2
192,988 + EX31_RS09915 0.61 -0.8
192,989 - EX31_RS09915 0.61 -0.4
192,989 - EX31_RS09915 0.61 -0.7
193,017 + EX31_RS09915 0.66 +0.8
193,017 + EX31_RS09915 0.66 +0.7
193,017 + EX31_RS09915 0.66 -0.4
193,017 + EX31_RS09915 0.66 +0.7
193,017 + EX31_RS09915 0.66 +0.7
193,017 + EX31_RS09915 0.66 +0.8
193,017 + EX31_RS09915 0.66 +0.2
193,017 + EX31_RS09915 0.66 +1.0
193,017 + EX31_RS09915 0.66 -0.4
193,017 + EX31_RS09915 0.66 +0.2
193,017 + EX31_RS09915 0.66 -0.3
193,017 + EX31_RS09915 0.66 -0.3
193,017 + EX31_RS09915 0.66 -0.4
193,017 + EX31_RS09915 0.66 +0.1
193,017 + EX31_RS09915 0.66 -0.3
193,017 + EX31_RS09915 0.66 +1.1
193,017 + EX31_RS09915 0.66 -1.2
193,017 + EX31_RS09915 0.66 -1.7
193,018 - EX31_RS09915 0.66 -0.2
193,018 - EX31_RS09915 0.66 +0.6
193,018 - EX31_RS09915 0.66 +0.1
193,018 - EX31_RS09915 0.66 -1.0
193,018 - EX31_RS09915 0.66 -0.0
193,018 - EX31_RS09915 0.66 -2.7
193,018 - EX31_RS09915 0.66 +0.6
193,019 + EX31_RS09915 0.66 -1.1
193,019 + EX31_RS09915 0.66 +0.0
193,019 + EX31_RS09915 0.66 +0.7
193,020 - EX31_RS09915 0.66 +1.7
193,191 - -0.5
193,236 - +0.2
193,358 + EX31_RS09920 0.12 -0.0
193,414 - EX31_RS09920 0.17 -0.2
193,414 - EX31_RS09920 0.17 -0.8
193,425 + EX31_RS09920 0.18 -0.1
193,430 + EX31_RS09920 0.19 +0.2
193,431 - EX31_RS09920 0.19 -0.3
193,431 - EX31_RS09920 0.19 -0.4
193,612 + EX31_RS09920 0.36 -1.3
193,644 + EX31_RS09920 0.39 -0.3
193,740 + EX31_RS09920 0.48 -1.5
193,740 + EX31_RS09920 0.48 -0.2
193,872 + EX31_RS09920 0.61 -0.7
193,873 - EX31_RS09920 0.61 -0.5
194,309 - +0.0
194,321 - -0.3
194,381 - EX31_RS09925 0.13 +1.1
194,381 - EX31_RS09925 0.13 -0.7
194,462 + EX31_RS09925 0.27 +0.5
194,536 + EX31_RS09925 0.39 -0.5
194,738 - EX31_RS09925 0.73 +0.1
194,926 - +0.1
195,051 + EX31_RS09930 0.18 -1.0
195,069 + EX31_RS09930 0.20 -0.5
195,108 + EX31_RS09930 0.25 -0.7
195,109 - EX31_RS09930 0.26 -0.4
195,109 - EX31_RS09930 0.26 -0.8
195,116 + EX31_RS09930 0.27 -1.6
195,116 + EX31_RS09930 0.27 -1.8
195,140 + EX31_RS09930 0.30 -1.4
195,190 + EX31_RS09930 0.36 +0.2
195,190 + EX31_RS09930 0.36 +1.3
195,190 + EX31_RS09930 0.36 -0.3
195,191 - EX31_RS09930 0.37 +0.4
195,237 - EX31_RS09930 0.43 +0.4

Or see this region's nucleotide sequence